Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47064 * 2 1 4 4 C 1.53001 * 109.47053 * 119.99511 * 2 1 3 5 5 C 1.53001 * 109.46928 * 175.97969 * 4 2 1 6 6 H 1.09000 * 109.38856 * 51.40652 * 5 4 2 7 7 C 1.50255 * 109.38672 * 291.61042 * 5 4 2 8 8 O 1.21285 * 118.62184 * 42.74884 * 7 5 4 9 9 N 1.33713 * 122.75324 * 222.72273 * 7 5 4 10 10 C 1.46009 * 122.92633 * 1.99049 * 9 7 5 11 11 C 1.53144 * 109.94639 * 341.37967 * 10 9 7 12 12 N 1.46896 * 109.30191 * 171.14734 * 5 4 2 13 13 C 1.46907 * 111.00140 * 293.76571 * 12 5 4 14 14 C 1.52993 * 109.47299 * 183.59775 * 13 12 5 15 15 H 1.09008 * 109.46897 * 58.26104 * 14 13 12 16 16 C 1.52996 * 109.47406 * 298.25889 * 14 13 12 17 17 C 1.52998 * 109.47173 * 178.25648 * 14 13 12 18 18 C 1.50700 * 109.47369 * 184.99992 * 17 14 13 19 19 H 1.08001 * 119.99800 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00105 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00197 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99924 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47248 * 90.00146 * 22 20 18 24 24 H 1.48501 * 109.47093 * 210.00224 * 22 20 18 25 25 H 1.48505 * 109.47101 * 329.99797 * 22 20 18 26 26 H 1.09004 * 109.47168 * 300.00173 * 1 2 3 27 27 H 1.09002 * 109.47301 * 59.99896 * 1 2 3 28 28 H 1.08995 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47202 * 240.00023 * 2 1 3 30 30 H 1.09001 * 109.47487 * 186.04594 * 3 2 1 31 31 H 1.09004 * 109.47237 * 306.04869 * 3 2 1 32 32 H 1.08997 * 109.47258 * 66.04738 * 3 2 1 33 33 H 1.09003 * 109.46557 * 55.98442 * 4 2 1 34 34 H 1.08995 * 109.47214 * 295.97819 * 4 2 1 35 35 H 0.96999 * 118.53844 * 181.70814 * 9 7 5 36 36 H 1.09001 * 109.37273 * 101.73380 * 10 9 7 37 37 H 1.08996 * 109.38032 * 221.38170 * 10 9 7 38 38 H 1.09002 * 109.78483 * 290.83898 * 11 10 9 39 39 H 1.08997 * 109.54134 * 170.30217 * 11 10 9 40 40 H 1.08999 * 109.46936 * 303.60178 * 13 12 5 41 41 H 1.09000 * 109.46494 * 63.60168 * 13 12 5 42 42 H 1.08991 * 109.47536 * 299.99990 * 16 14 13 43 43 H 1.09003 * 109.47171 * 60.00327 * 16 14 13 44 44 H 1.09003 * 109.47487 * 179.97438 * 16 14 13 45 45 H 1.09000 * 109.47576 * 305.00493 * 17 14 13 46 46 H 1.09000 * 109.46886 * 65.00226 * 17 14 13 47 47 H 0.96996 * 120.00260 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5666 -0.8093 1.1997 6 1 3.9803 0.1811 1.0097 7 6 3.9768 -1.7416 0.0950 8 8 3.4005 -1.6697 -0.9698 9 7 4.9508 -2.6467 0.2365 10 6 5.6767 -2.8423 1.4882 11 6 5.5019 -1.6173 2.3904 12 7 4.0663 -1.3074 2.4882 13 6 3.8087 -0.3392 3.5626 14 6 4.4208 -0.8511 4.8680 15 1 5.4914 -1.0046 4.7316 16 6 3.7610 -2.1759 5.2557 17 6 4.1904 0.1773 5.9771 18 6 4.8979 -0.2687 7.2307 19 1 5.4564 -1.1931 7.2357 20 6 4.8321 0.5032 8.3713 21 7 5.4499 0.1142 9.4651 22 14 3.8653 2.1016 8.3628 23 1 2.4608 1.8328 8.7630 24 1 4.4789 3.0563 9.3206 25 1 3.8879 2.6865 6.9979 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1246 1.4445 -0.1082 31 1 1.5909 1.9867 -0.8309 32 1 1.7677 1.9242 0.9391 33 1 1.6190 -1.7259 1.2860 34 1 1.7367 -0.1673 2.1378 35 1 5.1827 -3.2008 -0.5251 36 1 5.2916 -3.7271 1.9951 37 1 6.7361 -2.9829 1.2737 38 1 6.0313 -0.7657 1.9631 39 1 5.8970 -1.8358 3.3825 40 1 4.2569 0.6198 3.3027 41 1 2.7333 -0.2152 3.6897 42 1 2.6905 -2.0225 5.3921 43 1 3.9252 -2.9086 4.4656 44 1 4.1974 -2.5408 6.1855 45 1 4.5826 1.1445 5.6631 46 1 3.1220 0.2653 6.1746 47 1 5.4033 0.6571 10.2676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = -49.154063 kcal Electronic energy + Delta-G solvation = -23723.704367 eV Core-core repulsion = 20519.738772 eV Total energy + Delta-G solvation = -3203.965595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76536 -37.87363 -36.57254 -35.39608 -33.68856 -32.05910 -30.34219 -28.37211 -27.27986 -27.16709 -25.99712 -23.81561 -23.12626 -21.68725 -20.11310 -19.29273 -18.87772 -17.43218 -16.89453 -16.43799 -15.87787 -15.31146 -14.98661 -14.61711 -14.41880 -14.06141 -13.88229 -13.71733 -13.18661 -13.08172 -12.93200 -12.47293 -12.30390 -12.21690 -12.03222 -11.73044 -11.68777 -11.53618 -11.33681 -11.01710 -10.92618 -10.81569 -10.64275 -10.61960 -10.42614 -9.79891 -9.76118 -9.56840 -9.31901 -9.19817 -9.08693 -8.55017 -8.35028 -6.05541 -4.02864 2.53516 3.15668 3.29126 3.37030 3.39579 3.75136 4.42784 4.43740 4.68509 4.81075 4.94973 5.00094 5.07333 5.15621 5.17972 5.28129 5.39507 5.45064 5.62048 5.64695 5.68717 5.75890 5.79420 5.81962 5.85920 5.91280 5.97632 6.01732 6.17621 6.23704 6.28621 6.34994 6.46177 6.52499 6.66643 6.75605 6.90801 6.97746 7.08461 7.12004 7.19795 7.24913 7.41325 7.78368 8.13855 8.52641 8.99479 9.57396 11.07767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004551 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.728436 B = 6151.039639 C = 7208.365624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.145 4.145 4 C -0.090 4.090 5 C 0.065 3.935 6 H 0.076 0.924 7 C 0.531 3.469 8 O -0.549 6.549 9 N -0.719 5.719 10 C 0.115 3.885 11 C 0.023 3.977 12 N -0.523 5.523 13 C 0.054 3.946 14 C -0.077 4.077 15 H 0.065 0.935 16 C -0.126 4.126 17 C -0.009 4.009 18 C -0.513 4.513 19 H 0.074 0.926 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.113 0.887 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 -2.951 -18.656 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.046 4.046 6 H 0.093 0.907 7 C 0.318 3.682 8 O -0.427 6.427 9 N -0.371 5.371 10 C -0.009 4.009 11 C -0.105 4.105 12 N -0.248 5.248 13 C -0.073 4.073 14 C -0.095 4.095 15 H 0.083 0.917 16 C -0.183 4.183 17 C -0.047 4.047 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.131 0.869 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.616 -3.161 -18.710 19.316 hybrid contribution 0.183 1.427 -0.105 1.443 sum -3.433 -1.733 -18.815 19.204 Atomic orbital electron populations 1.21789 0.95573 1.01397 1.01236 1.21527 0.95392 0.96229 1.00377 1.21860 1.00598 0.96459 1.01354 1.21491 0.91009 1.01689 0.98612 1.21853 0.98307 0.96315 0.88121 0.90702 1.20159 0.78557 0.80548 0.88943 1.90615 1.53109 1.70685 1.28306 1.45610 1.37526 1.38880 1.15082 1.21584 0.96113 0.99156 0.84084 1.22706 0.89506 0.96435 1.01840 1.62578 1.14726 1.44267 1.03261 1.22464 1.01654 0.92114 0.91021 1.21153 0.98875 0.97086 0.92422 0.91730 1.21611 0.99811 0.96223 1.00638 1.19608 0.96641 0.94164 0.94258 1.21096 1.31679 1.08602 0.93762 0.90824 1.25015 0.95243 0.97689 0.95520 1.69905 1.43771 1.38836 1.01829 0.86826 0.80487 0.84135 0.78093 1.20327 1.21502 1.19137 0.93088 0.93020 0.92931 0.87406 0.93216 0.92971 0.92997 0.91203 0.90702 0.76785 0.90620 0.90354 0.93993 0.86944 0.95004 0.90338 0.93963 0.93752 0.92120 0.96925 0.96953 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.12 -1.37 2.75 -90.62 -0.25 -1.62 16 3 C -0.15 -1.60 8.78 37.16 0.33 -1.27 16 4 C -0.09 -1.11 4.17 -26.73 -0.11 -1.22 16 5 C 0.07 0.82 1.90 -69.08 -0.13 0.69 16 6 H 0.08 0.95 6.22 -51.93 -0.32 0.63 16 7 C 0.53 6.89 7.36 -11.67 -0.09 6.80 16 8 O -0.55 -8.37 14.50 5.55 0.08 -8.29 16 9 N -0.72 -7.45 5.52 -60.98 -0.34 -7.79 16 10 C 0.12 1.04 7.40 -4.23 -0.03 1.01 16 11 C 0.02 0.26 5.34 -3.59 -0.02 0.24 16 12 N -0.52 -6.77 3.87 -227.96 -0.88 -7.65 16 13 C 0.05 0.81 4.19 -3.82 -0.02 0.79 16 14 C -0.08 -1.37 1.90 -90.63 -0.17 -1.54 16 15 H 0.06 1.15 5.97 -51.92 -0.31 0.84 16 16 C -0.13 -2.19 8.86 37.16 0.33 -1.86 16 17 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 18 C -0.51 -13.91 8.96 -34.44 -0.31 -14.22 16 19 H 0.07 2.14 7.30 -52.49 -0.38 1.75 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 22 Si 0.88 21.32 27.47 -169.99 -4.67 16.66 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 1.48 5.19 -51.93 -0.27 1.21 16 30 H 0.05 0.56 6.66 -51.93 -0.35 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 35 H 0.40 3.48 8.84 -40.82 -0.36 3.12 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.11 1.35 5.52 -51.93 -0.29 1.06 16 40 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.08 1.18 6.46 -51.93 -0.34 0.84 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 44 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 46 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.45 351.39 -8.34 -38.79 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.27 Total: 1.37 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.32 Total: -11.86 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.45 Total: -41.97 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.45 -8.34 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.363 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds