Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.53002 * 109.46825 * 119.99666 * 2 1 3 5 5 C 1.53002 * 109.46975 * 65.42744 * 4 2 1 6 6 H 1.08998 * 109.38955 * 308.24888 * 5 4 2 7 7 C 1.50265 * 109.30041 * 67.99074 * 5 4 2 8 8 O 1.21280 * 118.62439 * 317.30370 * 7 5 4 9 9 N 1.33714 * 122.75143 * 137.32432 * 7 5 4 10 10 C 1.46074 * 122.98193 * 358.43574 * 9 7 5 11 11 C 1.52992 * 110.00150 * 17.90167 * 10 9 7 12 12 N 1.46905 * 109.38523 * 188.45420 * 5 4 2 13 13 C 1.46902 * 110.99866 * 313.01562 * 12 5 4 14 14 C 1.53004 * 109.46557 * 171.30576 * 13 12 5 15 15 H 1.08998 * 109.47208 * 54.36514 * 14 13 12 16 16 C 1.53000 * 109.47015 * 294.35596 * 14 13 12 17 17 C 1.53007 * 109.46584 * 174.36054 * 14 13 12 18 18 C 1.50694 * 109.46680 * 184.99889 * 17 14 13 19 19 H 1.08004 * 120.00564 * 0.02562 * 18 17 14 20 20 C 1.37881 * 120.00125 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99808 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00332 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46905 * 60.00413 * 22 20 18 24 24 H 1.48507 * 109.46912 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47270 * 300.00157 * 22 20 18 26 26 H 1.09002 * 109.47025 * 62.82705 * 1 2 3 27 27 H 1.09002 * 109.47079 * 182.82451 * 1 2 3 28 28 H 1.08997 * 109.47484 * 302.82607 * 1 2 3 29 29 H 1.09001 * 109.46941 * 239.99824 * 2 1 3 30 30 H 1.08998 * 109.46552 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46929 * 299.99807 * 3 2 1 32 32 H 1.09002 * 109.47134 * 59.99764 * 3 2 1 33 33 H 1.08994 * 109.47037 * 305.43203 * 4 2 1 34 34 H 1.08998 * 109.47162 * 185.42664 * 4 2 1 35 35 H 0.96997 * 118.54051 * 178.31050 * 9 7 5 36 36 H 1.08994 * 109.27963 * 257.81403 * 10 9 7 37 37 H 1.09000 * 109.51223 * 138.13316 * 10 9 7 38 38 H 1.09005 * 109.58959 * 190.07600 * 11 10 9 39 39 H 1.08998 * 109.59346 * 69.77820 * 11 10 9 40 40 H 1.09001 * 109.47180 * 291.30578 * 13 12 5 41 41 H 1.09001 * 109.47039 * 51.31098 * 13 12 5 42 42 H 1.08994 * 109.47766 * 304.56766 * 16 14 13 43 43 H 1.08998 * 109.46787 * 64.57419 * 16 14 13 44 44 H 1.09005 * 109.46807 * 184.56673 * 16 14 13 45 45 H 1.09001 * 109.47344 * 304.99914 * 17 14 13 46 46 H 1.08997 * 109.47276 * 65.00192 * 17 14 13 47 47 H 0.96991 * 120.00392 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6444 -2.1977 1.1830 6 1 0.5753 -2.2774 0.9861 7 6 2.4069 -2.8669 0.0745 8 8 2.5254 -2.2849 -0.9829 9 7 2.9599 -4.0773 0.2050 10 6 2.9039 -4.8476 1.4449 11 6 1.7976 -4.3024 2.3502 12 7 1.9534 -2.8434 2.4658 13 6 3.3060 -2.4927 2.9193 14 6 3.5124 -3.0004 4.3478 15 1 3.2936 -4.0674 4.3894 16 6 2.5752 -2.2500 5.2962 17 6 4.9636 -2.7607 4.7695 18 6 5.1992 -3.3699 6.1275 19 1 4.3946 -3.8777 6.6386 20 6 6.4423 -3.2800 6.7171 21 7 7.4223 -2.6621 6.0946 22 14 6.7342 -4.0345 8.4009 23 1 6.4702 -5.4947 8.3414 24 1 8.1431 -3.8030 8.8095 25 1 5.8218 -3.4063 9.3898 26 1 -0.3633 0.4693 -0.9143 27 1 -0.3633 -1.0264 0.0506 28 1 -0.3634 0.5571 0.8635 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.5994 -0.2666 2.1365 34 1 3.1256 -0.6378 1.2993 35 1 3.4177 -4.4624 -0.5585 36 1 3.8620 -4.7721 1.9591 37 1 2.7002 -5.8934 1.2148 38 1 1.8757 -4.7578 3.3375 39 1 0.8242 -4.5330 1.9173 40 1 4.0413 -2.9538 2.2600 41 1 3.4270 -1.4096 2.8976 42 1 2.7385 -1.1771 5.1949 43 1 1.5407 -2.4854 5.0462 44 1 2.7787 -2.5531 6.3233 45 1 5.6337 -3.2210 4.0434 46 1 5.1568 -1.6889 4.8136 47 1 8.2969 -2.5991 6.5092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -49.614814 kcal Electronic energy + Delta-G solvation = -23938.037921 eV Core-core repulsion = 20734.052346 eV Total energy + Delta-G solvation = -3203.985575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.01679 -37.71117 -36.51215 -35.08475 -33.52960 -32.01341 -30.34590 -27.82438 -27.09853 -26.78401 -26.24585 -23.82605 -23.03303 -22.17743 -20.13347 -19.50444 -18.19018 -17.33347 -16.58419 -16.27966 -15.73507 -15.61786 -15.01634 -14.45137 -14.28735 -14.15614 -13.70172 -13.53396 -13.24298 -12.83191 -12.61502 -12.29745 -12.23248 -12.09064 -11.91928 -11.69848 -11.50385 -11.33107 -11.29115 -11.09385 -10.86573 -10.74415 -10.53389 -10.46001 -10.31356 -10.25061 -9.64201 -9.60518 -9.18679 -9.11858 -9.00420 -8.35191 -8.09508 -5.99978 -4.01602 2.60169 3.15871 3.32165 3.37281 3.39081 3.94916 4.45578 4.48931 4.72478 4.87864 4.97574 5.05094 5.07119 5.20307 5.29692 5.35905 5.45768 5.56281 5.65414 5.68586 5.80328 5.82938 5.89424 5.91441 5.96271 6.00396 6.05852 6.11110 6.24272 6.34214 6.40259 6.46985 6.55286 6.63609 6.73501 6.92529 6.98843 7.10658 7.20277 7.26877 7.30027 7.65492 7.80858 7.99543 8.19329 8.42817 9.04600 9.62030 11.11396 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.004267 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.398554 B = 6560.519449 C = 7028.026960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.143 4.143 4 C -0.096 4.096 5 C 0.070 3.930 6 H 0.114 0.886 7 C 0.492 3.508 8 O -0.549 6.549 9 N -0.721 5.721 10 C 0.067 3.933 11 C 0.036 3.964 12 N -0.517 5.517 13 C 0.043 3.957 14 C -0.079 4.079 15 H 0.056 0.944 16 C -0.124 4.124 17 C 0.028 3.972 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.011 0.989 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 -0.340 -10.937 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.201 4.201 4 C -0.134 4.134 5 C -0.042 4.042 6 H 0.131 0.869 7 C 0.278 3.722 8 O -0.426 6.426 9 N -0.373 5.373 10 C -0.058 4.058 11 C -0.093 4.093 12 N -0.239 5.239 13 C -0.084 4.084 14 C -0.097 4.097 15 H 0.074 0.926 16 C -0.181 4.181 17 C -0.009 4.009 18 C -0.552 4.552 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.343 0.295 -10.897 17.230 hybrid contribution 1.182 -1.058 0.133 1.592 sum -12.161 -0.763 -10.764 16.259 Atomic orbital electron populations 1.21842 0.95853 1.01155 1.01157 1.21549 0.95491 0.96219 1.00372 1.21792 1.00947 0.96156 1.01159 1.21621 1.01520 0.91228 0.99073 1.22047 1.00476 0.95641 0.86030 0.86899 1.21399 0.79172 0.81106 0.90518 1.90587 1.60629 1.62023 1.29396 1.45673 1.57390 1.18627 1.15616 1.22185 1.02201 0.95853 0.85578 1.22575 0.97380 0.88728 1.00616 1.62749 1.29273 1.07204 1.24721 1.22655 0.86329 1.01575 0.97808 1.21212 0.98999 0.98599 0.90930 0.92584 1.21598 0.97535 0.99190 0.99775 1.19105 0.88710 0.97109 0.96007 1.21170 0.95876 1.35397 1.02750 0.92599 1.25014 0.96324 0.95508 0.97589 1.69952 1.02288 1.43053 1.38279 0.86706 0.77118 0.79704 0.84747 1.20336 1.21397 1.20243 0.93173 0.93078 0.93005 0.87328 0.92888 0.93058 0.93069 0.90066 0.91418 0.76893 0.90211 0.90243 0.87684 0.90382 0.94613 0.90259 0.94204 0.94007 0.92509 0.97097 0.96608 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.03 37.16 0.34 -1.17 16 2 C -0.12 -1.44 2.75 -90.61 -0.25 -1.69 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.10 -1.25 3.00 -26.73 -0.08 -1.33 16 5 C 0.07 0.89 2.44 -69.07 -0.17 0.72 16 6 H 0.11 1.33 6.18 -51.93 -0.32 1.01 16 7 C 0.49 6.90 6.83 -11.67 -0.08 6.82 16 8 O -0.55 -9.02 14.45 5.56 0.08 -8.94 16 9 N -0.72 -8.71 5.35 -61.01 -0.33 -9.04 16 10 C 0.07 0.74 6.44 -4.28 -0.03 0.71 16 11 C 0.04 0.40 5.65 -3.67 -0.02 0.38 16 12 N -0.52 -6.87 4.49 -228.04 -1.02 -7.90 16 13 C 0.04 0.70 3.28 -3.82 -0.01 0.68 16 14 C -0.08 -1.48 2.26 -90.61 -0.20 -1.69 16 15 H 0.06 1.04 6.42 -51.93 -0.33 0.70 16 16 C -0.12 -2.24 8.91 37.16 0.33 -1.91 16 17 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 18 C -0.51 -13.86 8.34 -34.44 -0.29 -14.14 16 19 H 0.06 1.46 7.08 -52.48 -0.37 1.09 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.53 6.30 -51.93 -0.33 0.20 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 1.57 5.11 -51.93 -0.27 1.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 35 H 0.40 4.34 8.84 -40.82 -0.36 3.98 16 36 H 0.08 1.03 6.76 -51.93 -0.35 0.68 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.20 6.62 -51.93 -0.34 0.86 16 39 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.04 0.61 5.69 -51.93 -0.30 0.32 16 41 H 0.08 1.34 5.82 -51.93 -0.30 1.04 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 44 H 0.06 1.12 6.83 -51.93 -0.35 0.77 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -30.12 350.50 -8.78 -38.90 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.17 Total: 3.08 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.34 Total: -11.83 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.61 Total: -42.69 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.12 -8.78 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.711 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds