Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47471 * 2 1 4 4 C 1.52999 * 109.47635 * 119.99945 * 2 1 3 5 5 C 1.52999 * 109.46932 * 64.99765 * 4 2 1 6 6 H 1.09004 * 109.29786 * 302.10784 * 5 4 2 7 7 C 1.50259 * 109.38725 * 182.37220 * 5 4 2 8 8 O 1.21281 * 118.62157 * 42.63967 * 7 5 4 9 9 N 1.33717 * 122.74873 * 222.64312 * 7 5 4 10 10 C 1.46007 * 122.92894 * 1.68349 * 9 7 5 11 11 C 1.52987 * 110.04156 * 341.84086 * 10 9 7 12 12 N 1.46902 * 109.38924 * 61.84992 * 5 4 2 13 13 C 1.46904 * 110.99368 * 47.08886 * 12 5 4 14 14 C 1.53004 * 109.46670 * 186.88614 * 13 12 5 15 15 H 1.09004 * 109.47090 * 304.99596 * 14 13 12 16 16 C 1.52996 * 109.47113 * 65.00111 * 14 13 12 17 17 C 1.52997 * 109.47041 * 185.00273 * 14 13 12 18 18 C 1.50698 * 109.47290 * 174.99880 * 17 14 13 19 19 H 1.07996 * 119.99749 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99975 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99836 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47053 * 89.99798 * 22 20 18 24 24 H 1.48503 * 109.46906 * 210.00022 * 22 20 18 25 25 H 1.48497 * 109.46977 * 329.99946 * 22 20 18 26 26 H 1.09002 * 109.46542 * 300.00545 * 1 2 3 27 27 H 1.08999 * 109.47208 * 59.99590 * 1 2 3 28 28 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47007 * 240.00061 * 2 1 3 30 30 H 1.08997 * 109.47290 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46649 * 300.00111 * 3 2 1 32 32 H 1.08991 * 109.47012 * 60.00116 * 3 2 1 33 33 H 1.09002 * 109.46983 * 304.99955 * 4 2 1 34 34 H 1.08996 * 109.47658 * 184.99525 * 4 2 1 35 35 H 0.97000 * 118.53213 * 181.71084 * 9 7 5 36 36 H 1.09003 * 109.37397 * 221.66447 * 10 9 7 37 37 H 1.08998 * 109.37401 * 102.01407 * 10 9 7 38 38 H 1.09003 * 109.59179 * 290.51400 * 11 10 9 39 39 H 1.08996 * 109.59010 * 170.06398 * 11 10 9 40 40 H 1.08993 * 109.47337 * 66.88934 * 13 12 5 41 41 H 1.08993 * 109.47009 * 306.88318 * 13 12 5 42 42 H 1.09000 * 109.47071 * 299.99819 * 16 14 13 43 43 H 1.08996 * 109.47237 * 59.99708 * 16 14 13 44 44 H 1.09005 * 109.47103 * 180.02562 * 16 14 13 45 45 H 1.09009 * 109.46890 * 295.00120 * 17 14 13 46 46 H 1.08998 * 109.47254 * 54.99635 * 17 14 13 47 47 H 0.96997 * 120.00528 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5509 -2.2681 1.1045 7 6 2.0865 -2.8891 2.4422 8 8 1.9343 -2.3249 3.5049 9 7 2.6487 -4.1023 2.4355 10 6 2.9090 -4.8497 1.2086 11 6 2.0704 -4.2829 0.0615 12 7 2.2579 -2.8238 0.0151 13 6 3.6831 -2.4786 -0.0725 14 6 4.2553 -3.0053 -1.3902 15 1 4.0616 -4.0751 -1.4686 16 6 3.5902 -2.2793 -2.5613 17 6 5.7644 -2.7564 -1.4265 18 6 6.3472 -3.3832 -2.6668 19 1 5.7053 -3.9064 -3.3601 20 6 7.6997 -3.2878 -2.9171 21 7 8.4812 -2.6494 -2.0737 22 14 8.4220 -4.0643 -4.4550 23 1 8.3994 -3.0780 -5.5648 24 1 9.8232 -4.4783 -4.1891 25 1 7.6177 -5.2538 -4.8334 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6055 -0.2617 2.1370 34 1 3.1264 -0.6444 1.2951 35 1 2.8943 -4.5037 3.2837 36 1 2.6507 -5.8976 1.3619 37 1 3.9664 -4.7729 0.9558 38 1 1.0180 -4.5111 0.2306 39 1 2.3953 -4.7233 -0.8811 40 1 4.2184 -2.9306 0.7624 41 1 3.7976 -1.3954 -0.0338 42 1 2.5151 -2.4567 -2.5353 43 1 3.7840 -1.2095 -2.4828 44 1 3.9975 -2.6548 -3.5000 45 1 5.9555 -1.6832 -1.4376 46 1 6.2270 -3.1986 -0.5442 47 1 9.4327 -2.5826 -2.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -52.481165 kcal Electronic energy + Delta-G solvation = -24183.727290 eV Core-core repulsion = 20979.617421 eV Total energy + Delta-G solvation = -3204.109869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98589 -37.78679 -36.45431 -35.08971 -33.48506 -32.03152 -30.27827 -27.86254 -27.09243 -26.76981 -26.25237 -23.92821 -23.00796 -22.18034 -19.93252 -19.36761 -18.32442 -17.29422 -16.64710 -16.28968 -15.64640 -15.61199 -14.96843 -14.48575 -14.36135 -14.15917 -13.70531 -13.49984 -13.18788 -12.92281 -12.55080 -12.39396 -12.26138 -12.04314 -11.80269 -11.68235 -11.45734 -11.26391 -11.19276 -10.91041 -10.84221 -10.76314 -10.49203 -10.42308 -10.33015 -10.23425 -10.05210 -9.61446 -9.19312 -9.10718 -8.99334 -8.35776 -8.09669 -6.00371 -4.01900 2.60945 3.16938 3.30702 3.37539 3.39727 3.97931 4.45425 4.47385 4.73401 4.89123 4.98939 5.05550 5.11199 5.23205 5.31586 5.35801 5.44823 5.57110 5.67569 5.71789 5.80173 5.86410 5.87650 5.92737 5.97547 6.03213 6.05430 6.12493 6.28307 6.34811 6.43925 6.46151 6.58374 6.63514 6.68251 6.93651 6.98760 7.10848 7.19411 7.25631 7.29901 7.65475 7.80635 7.99318 8.17585 8.42597 9.04625 9.61893 11.11024 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004918 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.562379 B = 5692.109822 C = 6452.073718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.102 4.102 5 C 0.071 3.929 6 H 0.113 0.887 7 C 0.491 3.509 8 O -0.557 6.557 9 N -0.721 5.721 10 C 0.068 3.932 11 C 0.036 3.964 12 N -0.512 5.512 13 C 0.042 3.958 14 C -0.078 4.078 15 H 0.056 0.944 16 C -0.124 4.124 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.016 0.984 46 H 0.010 0.990 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -0.216 4.975 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.140 4.140 5 C -0.040 4.040 6 H 0.130 0.870 7 C 0.276 3.724 8 O -0.434 6.434 9 N -0.373 5.373 10 C -0.058 4.058 11 C -0.093 4.093 12 N -0.236 5.236 13 C -0.085 4.085 14 C -0.097 4.097 15 H 0.074 0.926 16 C -0.181 4.181 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.544 0.425 4.908 16.306 hybrid contribution 1.196 -1.100 0.292 1.651 sum -14.348 -0.674 5.200 15.276 Atomic orbital electron populations 1.21839 0.95665 1.01493 1.01102 1.21080 0.95508 0.95680 0.98888 1.21841 1.01281 0.96130 1.01259 1.21693 1.01934 0.91319 0.99091 1.22000 1.01201 0.95553 0.85284 0.86956 1.21406 0.76920 0.81288 0.92756 1.90708 1.56054 1.64032 1.32622 1.45631 1.62806 1.18557 1.10300 1.22177 1.02223 0.96147 0.85247 1.22581 0.99718 0.88623 0.98357 1.62709 1.16439 1.07715 1.36706 1.22666 0.85019 1.01783 0.99040 1.21209 0.98205 0.98553 0.91725 0.92608 1.21601 0.98450 0.99458 0.98581 1.19112 0.87926 0.97095 0.96824 1.21202 0.92564 1.34384 1.06912 0.92570 1.25013 0.97402 0.95530 0.96517 1.69960 1.04785 1.42620 1.36207 0.86653 0.78390 0.79653 0.83652 1.20712 1.21363 1.19922 0.93306 0.92971 0.92601 0.89014 0.92559 0.92764 0.93168 0.90588 0.91005 0.76899 0.90333 0.90190 0.90394 0.87644 0.94731 0.89980 0.93827 0.94084 0.92746 0.96608 0.97121 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.95 37.15 0.33 -1.13 16 2 C -0.09 -1.09 2.57 -90.62 -0.23 -1.32 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.31 16 4 C -0.10 -1.33 3.39 -26.73 -0.09 -1.42 16 5 C 0.07 0.91 2.25 -69.08 -0.16 0.75 16 6 H 0.11 1.31 6.46 -51.93 -0.34 0.97 16 7 C 0.49 7.11 6.82 -11.67 -0.08 7.03 16 8 O -0.56 -9.86 17.02 5.56 0.09 -9.77 16 9 N -0.72 -8.88 5.34 -61.06 -0.33 -9.20 16 10 C 0.07 0.74 6.43 -4.31 -0.03 0.71 16 11 C 0.04 0.39 5.61 -3.68 -0.02 0.37 16 12 N -0.51 -6.57 3.68 -228.06 -0.84 -7.41 16 13 C 0.04 0.66 2.92 -3.82 -0.01 0.65 16 14 C -0.08 -1.44 2.22 -90.62 -0.20 -1.64 16 15 H 0.06 1.01 6.38 -51.93 -0.33 0.68 16 16 C -0.12 -2.18 8.89 37.16 0.33 -1.85 16 17 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 18 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 19 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.55 6.52 -51.93 -0.34 0.22 16 29 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.02 7.74 -51.93 -0.40 0.61 16 34 H 0.07 1.04 6.05 -51.93 -0.31 0.73 16 35 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.03 6.79 -51.93 -0.35 0.68 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.11 1.18 6.59 -51.93 -0.34 0.84 16 40 H 0.03 0.59 5.73 -51.93 -0.30 0.29 16 41 H 0.08 1.36 5.26 -51.93 -0.27 1.09 16 42 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 45 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -30.50 352.56 -8.57 -39.07 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.21 Total: 2.69 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.33 Total: -11.16 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.43 Total: -42.30 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.50 -8.57 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds