Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46701 * 2 1 4 4 C 1.52999 * 109.47223 * 120.00689 * 2 1 3 5 5 C 1.50696 * 109.47043 * 183.71793 * 4 2 1 6 6 H 1.08000 * 119.99981 * 5.06698 * 5 4 2 7 7 C 1.37875 * 120.00154 * 185.07620 * 5 4 2 8 8 N 1.31518 * 119.99521 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00360 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46938 * 89.99722 * 9 7 5 11 11 H 1.48495 * 109.47308 * 209.99620 * 9 7 5 12 12 H 1.48499 * 109.47195 * 329.99982 * 9 7 5 13 13 N 1.46901 * 109.46493 * 240.00661 * 2 1 3 14 14 C 1.46951 * 111.00520 * 72.32887 * 13 2 1 15 15 C 1.53047 * 109.36556 * 176.80772 * 14 13 2 16 16 N 1.46956 * 109.36603 * 58.40006 * 15 14 13 17 17 C 1.46897 * 111.00426 * 176.80897 * 16 15 14 18 18 C 1.53004 * 109.46922 * 313.80488 * 17 16 15 19 19 H 1.09000 * 110.33344 * 307.24413 * 18 17 16 20 20 C 1.54481 * 110.37009 * 184.99876 * 18 17 16 21 21 C 1.54519 * 104.06144 * 217.18727 * 20 18 17 22 22 C 1.54477 * 104.06110 * 359.97438 * 21 20 18 23 23 O 1.44418 * 110.37844 * 69.61618 * 18 17 16 24 24 C 1.46951 * 110.88000 * 300.68154 * 16 15 14 25 25 C 1.46959 * 111.00020 * 308.52130 * 13 2 1 26 26 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46793 * 299.99619 * 1 2 3 28 28 H 1.09003 * 109.47277 * 59.99244 * 1 2 3 29 29 H 1.09002 * 109.46869 * 303.71192 * 4 2 1 30 30 H 1.08996 * 109.47074 * 63.71005 * 4 2 1 31 31 H 0.97007 * 119.99729 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.48701 * 296.77807 * 14 13 2 33 33 H 1.09001 * 109.48761 * 56.84024 * 14 13 2 34 34 H 1.08998 * 109.49266 * 298.42937 * 15 14 13 35 35 H 1.09002 * 109.50403 * 178.37953 * 15 14 13 36 36 H 1.09003 * 109.46981 * 73.79501 * 17 16 15 37 37 H 1.08991 * 109.47369 * 193.79989 * 17 16 15 38 38 H 1.09000 * 110.51243 * 335.82591 * 20 18 17 39 39 H 1.08994 * 110.51507 * 98.40779 * 20 18 17 40 40 H 1.08997 * 110.50607 * 118.64380 * 21 20 18 41 41 H 1.08993 * 110.50653 * 241.21881 * 21 20 18 42 42 H 1.08996 * 110.36928 * 142.80845 * 22 21 20 43 43 H 1.09003 * 110.37317 * 265.03808 * 22 21 20 44 44 H 1.08999 * 109.48701 * 299.34784 * 24 16 15 45 45 H 1.08999 * 109.51024 * 179.29438 * 24 16 15 46 46 H 1.08992 * 109.49212 * 303.16017 * 25 13 2 47 47 H 1.08997 * 109.48346 * 63.20749 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5442 -0.6421 1.2960 6 1 4.0775 -0.0599 0.5591 7 6 4.2396 -1.3129 2.2796 8 7 3.5901 -2.0215 3.1772 9 14 6.1041 -1.2152 2.3374 10 1 6.5135 -0.0633 3.1804 11 1 6.6479 -2.4700 2.9160 12 1 6.6332 -1.0345 0.9616 13 7 2.0195 -0.6924 -1.1996 14 6 1.8024 0.1221 -2.4033 15 6 2.3961 -0.5974 -3.6167 16 7 1.7659 -1.9176 -3.7569 17 6 2.2554 -2.6100 -4.9563 18 6 2.2439 -1.6443 -6.1431 19 1 1.2605 -1.1864 -6.2492 20 6 2.6357 -2.3836 -7.4417 21 6 3.4803 -1.3509 -8.2213 22 6 3.4982 -0.1098 -7.3017 23 8 3.2580 -0.6298 -5.9757 24 6 1.9830 -2.7320 -2.5531 25 6 1.3894 -2.0126 -1.3396 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.6234 -0.2475 2.1379 30 1 1.7320 -1.7664 1.2164 31 1 4.0793 -2.4932 3.8695 32 1 0.7331 0.2690 -2.5549 33 1 2.2890 1.0896 -2.2803 34 1 3.4701 -0.7201 -3.4773 35 1 2.2110 -0.0088 -4.5153 36 1 3.2729 -2.9609 -4.7835 37 1 1.6097 -3.4607 -5.1738 38 1 3.2299 -3.2683 -7.2131 39 1 1.7460 -2.6581 -8.0083 40 1 4.4919 -1.7252 -8.3781 41 1 3.0093 -1.1146 -9.1754 42 1 4.4704 0.3812 -7.3460 43 1 2.7092 0.5859 -7.5877 44 1 3.0524 -2.8790 -2.4015 45 1 1.4967 -3.6998 -2.6758 46 1 1.5748 -2.6013 -0.4413 47 1 0.3153 -1.8899 -1.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592996972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -33.895790 kcal Electronic energy + Delta-G solvation = -23676.750996 eV Core-core repulsion = 20473.447050 eV Total energy + Delta-G solvation = -3203.303947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98076 -38.68405 -35.97309 -32.86622 -32.39148 -31.36595 -30.52896 -29.30859 -27.23606 -26.26259 -23.91434 -23.32379 -22.71543 -21.82919 -20.97170 -19.82458 -18.47204 -16.95084 -16.11664 -15.95996 -15.73181 -15.41305 -14.75710 -14.43920 -14.36969 -14.09975 -13.83154 -13.72555 -13.39226 -12.87402 -12.38260 -12.22624 -12.03316 -11.93606 -11.72482 -11.63457 -11.56731 -11.26425 -11.08769 -10.99027 -10.92292 -10.71965 -10.49309 -10.46878 -10.28414 -10.08322 -9.83457 -9.73926 -9.07076 -8.89000 -8.20131 -8.06581 -7.30529 -5.83052 -3.79932 3.42589 3.48459 3.54560 3.71772 4.05137 4.36160 4.58164 4.61246 4.68276 4.73552 4.90280 5.03144 5.24506 5.29847 5.38957 5.45870 5.53438 5.54184 5.57374 5.63663 5.71368 5.74980 5.81480 5.86898 5.90533 5.93047 5.94569 6.01393 6.10702 6.14620 6.39657 6.45481 6.47738 6.61125 6.68656 6.71500 6.79243 7.09354 7.28242 7.35187 7.63569 7.78204 8.02598 8.13530 8.19990 8.65449 9.25431 9.81100 11.29048 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.004222 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.713445 B = 6629.616805 C = 7262.836922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.031 3.969 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.511 5.511 14 C 0.054 3.946 15 C 0.059 3.941 16 N -0.540 5.540 17 C 0.061 3.939 18 C 0.075 3.925 19 H 0.077 0.923 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.039 3.961 23 O -0.361 6.361 24 C 0.058 3.942 25 C 0.061 3.939 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.256 0.744 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 0.277 -21.892 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.075 4.075 15 C -0.069 4.069 16 N -0.265 5.265 17 C -0.067 4.067 18 C 0.017 3.983 19 H 0.095 0.905 20 C -0.187 4.187 21 C -0.192 4.192 22 C -0.038 4.038 23 O -0.280 6.280 24 C -0.069 4.069 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.442 0.230 -21.533 21.988 hybrid contribution 0.987 -0.117 -0.121 1.002 sum -3.454 0.114 -21.654 21.928 Atomic orbital electron populations 1.22503 0.99762 1.01343 1.00482 1.21894 0.90070 0.98135 0.92032 0.91547 1.19177 0.96254 0.95503 0.89702 1.21155 0.91669 1.28608 1.10942 0.92357 1.24983 0.97898 0.95921 0.96070 1.69969 1.35063 1.33081 1.16537 0.86656 0.86628 0.77056 0.78019 1.21038 1.21609 1.19979 1.62267 1.57503 1.02252 1.01413 1.22185 0.98138 0.96671 0.90471 1.22382 0.97028 0.89504 0.97938 1.62344 1.57883 1.04047 1.02269 1.22203 0.99256 0.95736 0.89541 1.23045 0.92476 0.88695 0.94079 0.90546 1.22935 1.00441 0.99215 0.96132 1.22915 1.01043 0.96043 0.99191 1.23398 1.01565 0.95676 0.83174 1.89367 1.58660 1.53803 1.26173 1.22173 0.99854 0.95690 0.89233 1.22108 0.95616 0.91675 0.97363 0.92777 0.92759 0.94175 0.96790 0.96003 0.93414 0.95293 0.91229 0.93973 0.89069 0.94039 0.89817 0.90593 0.90491 0.90816 0.90764 0.89309 0.92379 0.93813 0.91264 0.89356 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 8.39 37.16 0.31 -2.98 16 2 C 0.09 1.84 2.26 -67.71 -0.15 1.69 16 3 H 0.07 1.43 7.98 -51.93 -0.41 1.02 16 4 C 0.03 0.80 4.40 -27.89 -0.12 0.68 16 5 C -0.49 -13.92 8.80 -34.44 -0.30 -14.22 16 6 H 0.06 1.69 7.75 -52.49 -0.41 1.28 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.70 13.29 55.43 0.74 -26.96 16 9 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.51 -10.31 4.32 -226.50 -0.98 -11.29 16 14 C 0.05 0.94 5.36 -3.77 -0.02 0.92 16 15 C 0.06 0.95 4.30 -3.77 -0.02 0.93 16 16 N -0.54 -8.09 4.86 -234.48 -1.14 -9.23 16 17 C 0.06 0.74 5.02 -3.82 -0.02 0.72 16 18 C 0.07 0.79 2.74 -25.95 -0.07 0.72 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 21 C -0.15 -1.13 7.09 -25.16 -0.18 -1.31 16 22 C 0.04 0.34 7.63 37.93 0.29 0.63 16 23 O -0.36 -4.43 8.03 -35.23 -0.28 -4.72 16 24 C 0.06 0.96 5.58 -3.77 -0.02 0.94 16 25 C 0.06 1.14 4.70 -3.77 -0.02 1.12 16 26 H 0.05 0.98 6.38 -51.93 -0.33 0.64 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.66 6.85 -51.93 -0.36 0.30 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.60 6.42 -51.93 -0.33 0.27 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.03 0.49 6.85 -51.93 -0.36 0.14 16 33 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.09 1.36 5.32 -51.93 -0.28 1.08 16 36 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.86 6.37 -51.93 -0.33 1.53 16 47 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -31.21 349.96 -10.58 -41.79 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.59 Total: -2.26 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.59 Total: -10.16 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -1.38 Total: -47.47 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.28 Total: -4.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.21 -10.58 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592996972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.894 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds