Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46701 * 2 1 4 4 C 1.52999 * 109.47223 * 120.00689 * 2 1 3 5 5 C 1.50696 * 109.47043 * 183.71793 * 4 2 1 6 6 H 1.08000 * 119.99981 * 5.06698 * 5 4 2 7 7 C 1.37875 * 120.00154 * 185.07620 * 5 4 2 8 8 N 1.31518 * 119.99521 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00360 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46938 * 89.99722 * 9 7 5 11 11 H 1.48495 * 109.47308 * 209.99620 * 9 7 5 12 12 H 1.48499 * 109.47195 * 329.99982 * 9 7 5 13 13 N 1.46901 * 109.46493 * 240.00661 * 2 1 3 14 14 C 1.46951 * 111.00520 * 72.32887 * 13 2 1 15 15 C 1.53047 * 109.36556 * 176.80772 * 14 13 2 16 16 N 1.46956 * 109.36603 * 58.40006 * 15 14 13 17 17 C 1.46897 * 111.00426 * 176.80897 * 16 15 14 18 18 C 1.53004 * 109.46922 * 313.80488 * 17 16 15 19 19 H 1.09000 * 110.33344 * 307.24413 * 18 17 16 20 20 C 1.54481 * 110.37009 * 184.99876 * 18 17 16 21 21 C 1.54519 * 104.06144 * 217.18727 * 20 18 17 22 22 C 1.54477 * 104.06110 * 359.97438 * 21 20 18 23 23 O 1.44418 * 110.37844 * 69.61618 * 18 17 16 24 24 C 1.46951 * 110.88000 * 300.68154 * 16 15 14 25 25 C 1.46959 * 111.00020 * 308.52130 * 13 2 1 26 26 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46793 * 299.99619 * 1 2 3 28 28 H 1.09003 * 109.47277 * 59.99244 * 1 2 3 29 29 H 1.09002 * 109.46869 * 303.71192 * 4 2 1 30 30 H 1.08996 * 109.47074 * 63.71005 * 4 2 1 31 31 H 0.97007 * 119.99729 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.48701 * 296.77807 * 14 13 2 33 33 H 1.09001 * 109.48761 * 56.84024 * 14 13 2 34 34 H 1.08998 * 109.49266 * 298.42937 * 15 14 13 35 35 H 1.09002 * 109.50403 * 178.37953 * 15 14 13 36 36 H 1.09003 * 109.46981 * 73.79501 * 17 16 15 37 37 H 1.08991 * 109.47369 * 193.79989 * 17 16 15 38 38 H 1.09000 * 110.51243 * 335.82591 * 20 18 17 39 39 H 1.08994 * 110.51507 * 98.40779 * 20 18 17 40 40 H 1.08997 * 110.50607 * 118.64380 * 21 20 18 41 41 H 1.08993 * 110.50653 * 241.21881 * 21 20 18 42 42 H 1.08996 * 110.36928 * 142.80845 * 22 21 20 43 43 H 1.09003 * 110.37317 * 265.03808 * 22 21 20 44 44 H 1.08999 * 109.48701 * 299.34784 * 24 16 15 45 45 H 1.08999 * 109.51024 * 179.29438 * 24 16 15 46 46 H 1.08992 * 109.49212 * 303.16017 * 25 13 2 47 47 H 1.08997 * 109.48346 * 63.20749 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5442 -0.6421 1.2960 6 1 4.0775 -0.0599 0.5591 7 6 4.2396 -1.3129 2.2796 8 7 3.5901 -2.0215 3.1772 9 14 6.1041 -1.2152 2.3374 10 1 6.5135 -0.0633 3.1804 11 1 6.6479 -2.4700 2.9160 12 1 6.6332 -1.0345 0.9616 13 7 2.0195 -0.6924 -1.1996 14 6 1.8024 0.1221 -2.4033 15 6 2.3961 -0.5974 -3.6167 16 7 1.7659 -1.9176 -3.7569 17 6 2.2554 -2.6100 -4.9563 18 6 2.2439 -1.6443 -6.1431 19 1 1.2605 -1.1864 -6.2492 20 6 2.6357 -2.3836 -7.4417 21 6 3.4803 -1.3509 -8.2213 22 6 3.4982 -0.1098 -7.3017 23 8 3.2580 -0.6298 -5.9757 24 6 1.9830 -2.7320 -2.5531 25 6 1.3894 -2.0126 -1.3396 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.6234 -0.2475 2.1379 30 1 1.7320 -1.7664 1.2164 31 1 4.0793 -2.4932 3.8695 32 1 0.7331 0.2690 -2.5549 33 1 2.2890 1.0896 -2.2803 34 1 3.4701 -0.7201 -3.4773 35 1 2.2110 -0.0088 -4.5153 36 1 3.2729 -2.9609 -4.7835 37 1 1.6097 -3.4607 -5.1738 38 1 3.2299 -3.2683 -7.2131 39 1 1.7460 -2.6581 -8.0083 40 1 4.4919 -1.7252 -8.3781 41 1 3.0093 -1.1146 -9.1754 42 1 4.4704 0.3812 -7.3460 43 1 2.7092 0.5859 -7.5877 44 1 3.0524 -2.8790 -2.4015 45 1 1.4967 -3.6998 -2.6758 46 1 1.5748 -2.6013 -0.4413 47 1 0.3153 -1.8899 -1.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592996972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -55.080730 kcal Electronic energy + Delta-G solvation = -23677.669644 eV Core-core repulsion = 20473.447050 eV Total energy + Delta-G solvation = -3204.222595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97054 -39.94090 -37.37115 -34.89116 -33.24856 -32.74348 -31.90493 -30.50534 -29.16774 -27.41284 -25.31495 -24.84556 -24.29048 -22.62642 -21.90863 -21.25358 -20.01830 -18.35855 -17.86096 -17.02957 -16.70508 -16.45021 -16.42346 -16.07933 -15.74170 -15.30875 -15.16400 -14.82732 -14.55405 -14.48080 -13.89956 -13.69739 -13.27669 -13.26338 -13.08940 -12.95226 -12.78787 -12.61747 -12.47878 -12.42065 -12.20781 -12.14319 -11.96303 -11.87341 -11.65846 -11.43842 -11.36634 -11.09625 -10.92041 -10.59615 -10.47701 -9.33066 -8.85860 -8.10037 -6.14109 1.39333 1.40343 1.51992 2.46610 2.91053 2.97807 3.15169 3.28611 3.66816 3.86047 4.01556 4.06307 4.14161 4.15996 4.25104 4.33306 4.42955 4.44172 4.49656 4.50901 4.57402 4.62168 4.65990 4.68147 4.76911 4.87651 4.91063 4.94788 4.99870 5.02308 5.04531 5.13512 5.15153 5.21055 5.21901 5.24643 5.34436 5.49450 5.69853 5.89695 5.95610 6.06262 6.10965 6.34710 6.48255 6.56736 6.98639 7.50964 9.02021 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.004222 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.713445 B = 6629.616805 C = 7262.836922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 H 0.061 0.939 4 C 0.038 3.962 5 C -0.497 4.497 6 H 0.051 0.949 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.535 5.535 14 C 0.057 3.943 15 C 0.072 3.928 16 N -0.536 5.536 17 C 0.059 3.941 18 C 0.074 3.926 19 H 0.080 0.920 20 C -0.144 4.144 21 C -0.149 4.149 22 C 0.032 3.968 23 O -0.393 6.393 24 C 0.065 3.935 25 C 0.066 3.934 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.063 0.937 29 H -0.009 1.009 30 H -0.001 1.001 31 H 0.259 0.741 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.012 0.988 35 H 0.108 0.892 36 H 0.027 0.973 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 0.472 -24.380 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 H 0.080 0.920 4 C 0.001 3.999 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.259 5.259 14 C -0.071 4.071 15 C -0.056 4.056 16 N -0.261 5.261 17 C -0.068 4.068 18 C 0.017 3.983 19 H 0.098 0.902 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.045 4.045 23 O -0.313 6.313 24 C -0.063 4.063 25 C -0.062 4.062 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.009 0.991 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.126 0.874 36 H 0.045 0.955 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.767 0.434 -24.042 24.514 hybrid contribution 1.085 -0.172 0.634 1.269 sum -3.682 0.262 -23.408 23.697 Atomic orbital electron populations 1.22345 0.97043 1.01663 1.01818 1.21614 0.92200 0.96974 0.90641 0.92046 1.19021 0.95050 0.94473 0.91345 1.21434 0.93183 1.28305 1.10631 0.93053 1.25794 1.02700 0.95614 0.95746 1.70089 1.36913 1.33905 1.17202 0.85615 0.80895 0.77426 0.78077 1.19931 1.21021 1.19765 1.62154 1.58489 1.03168 1.02089 1.22216 0.98923 0.96373 0.89597 1.22261 0.95070 0.90367 0.97884 1.62382 1.57596 1.03615 1.02523 1.22345 0.98809 0.96736 0.88921 1.23088 0.92412 0.88464 0.94383 0.90196 1.22923 1.01367 0.98944 0.94973 1.22910 1.01236 0.94963 0.99591 1.23586 1.02147 0.96566 0.82158 1.89315 1.59169 1.54461 1.28350 1.22075 0.98244 0.96741 0.89220 1.22001 0.96352 0.90815 0.97050 0.92931 0.92344 0.91844 0.99097 0.98278 0.93256 0.94081 0.91264 0.96915 0.87426 0.95480 0.87582 0.90755 0.88494 0.90806 0.88729 0.89090 0.91301 0.96437 0.88825 0.92608 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.39 71.98 0.60 -5.39 16 2 C 0.09 4.03 2.26 44.92 0.10 4.14 16 3 H 0.06 2.67 7.98 -2.39 -0.02 2.65 16 4 C 0.04 2.06 4.40 29.85 0.13 2.19 16 5 C -0.50 -29.28 8.80 25.60 0.23 -29.05 16 6 H 0.05 3.03 7.75 -2.91 -0.02 3.01 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 9 Si 0.95 46.95 29.54 68.60 2.03 48.97 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.53 -21.76 4.32 -870.50 -3.76 -25.52 16 14 C 0.06 1.93 5.36 86.31 0.46 2.39 16 15 C 0.07 2.25 4.30 86.31 0.37 2.62 16 16 N -0.54 -15.36 4.86 -895.75 -4.35 -19.71 16 17 C 0.06 1.35 5.02 86.30 0.43 1.78 16 18 C 0.07 1.41 2.74 31.10 0.09 1.50 16 19 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.14 -1.91 6.63 31.61 0.21 -1.70 16 21 C -0.15 -1.79 7.09 31.61 0.22 -1.57 16 22 C 0.03 0.50 7.63 72.48 0.55 1.05 16 23 O -0.39 -9.14 8.03 -148.98 -1.20 -10.33 16 24 C 0.07 2.13 5.58 86.31 0.48 2.61 16 25 C 0.07 2.49 4.70 86.31 0.41 2.90 16 26 H 0.05 1.86 6.38 -2.39 -0.02 1.84 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.06 1.94 6.85 -2.39 -0.02 1.93 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.00 -0.06 6.42 -2.39 -0.02 -0.08 16 31 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 32 H 0.04 1.30 6.85 -2.39 -0.02 1.28 16 33 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 34 H 0.01 0.47 8.06 -2.39 -0.02 0.45 16 35 H 0.11 3.05 5.32 -2.39 -0.01 3.04 16 36 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.02 7.87 -2.39 -0.02 1.00 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.06 2.45 6.37 -2.39 -0.02 2.43 16 47 H 0.04 1.57 6.40 -2.39 -0.02 1.56 16 Total: -1.00 -68.29 349.96 -1.34 -69.63 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.91 Total: 11.61 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.75 Total: -16.21 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -7.83 Total: -103.67 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.20 Total: -10.33 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -68.29 -1.34 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592996972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.546 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds