Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.53004 * 109.47322 * 120.00458 * 2 1 3 5 5 C 1.50703 * 109.46828 * 296.65246 * 4 2 1 6 6 H 1.08005 * 119.99766 * 355.91756 * 5 4 2 7 7 C 1.37872 * 119.99549 * 175.91974 * 5 4 2 8 8 N 1.31524 * 119.99342 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00510 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47388 * 90.00254 * 9 7 5 11 11 H 1.48503 * 109.47208 * 210.00128 * 9 7 5 12 12 H 1.48497 * 109.47029 * 330.00045 * 9 7 5 13 13 N 1.46906 * 109.46972 * 240.00408 * 2 1 3 14 14 C 1.46958 * 110.99771 * 179.32037 * 13 2 1 15 15 C 1.53056 * 109.36359 * 176.81024 * 14 13 2 16 16 N 1.46953 * 109.36317 * 58.39854 * 15 14 13 17 17 C 1.46906 * 111.00042 * 176.81203 * 16 15 14 18 18 C 1.52995 * 109.47118 * 293.79899 * 17 16 15 19 19 H 1.09007 * 109.87131 * 59.29400 * 18 17 16 20 20 C 1.54104 * 109.88061 * 180.30281 * 18 17 16 21 21 C 1.54810 * 104.18608 * 121.45380 * 20 18 17 22 22 C 1.54998 * 102.09161 * 20.88378 * 21 20 18 23 23 O 1.43745 * 109.88104 * 298.29501 * 18 17 16 24 24 C 1.46958 * 110.88369 * 300.67956 * 16 15 14 25 25 C 1.46953 * 111.00042 * 55.51793 * 13 2 1 26 26 H 1.08993 * 109.47787 * 60.00127 * 1 2 3 27 27 H 1.09004 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47166 * 299.99231 * 1 2 3 29 29 H 1.08997 * 109.47154 * 56.65470 * 4 2 1 30 30 H 1.09001 * 109.47234 * 176.65493 * 4 2 1 31 31 H 0.97005 * 119.99356 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.48926 * 296.77398 * 14 13 2 33 33 H 1.08997 * 109.49545 * 56.84545 * 14 13 2 34 34 H 1.08999 * 109.48882 * 298.43039 * 15 14 13 35 35 H 1.08996 * 109.48678 * 178.36675 * 15 14 13 36 36 H 1.09000 * 109.46678 * 53.79603 * 17 16 15 37 37 H 1.08996 * 109.47094 * 173.79497 * 17 16 15 38 38 H 1.08998 * 110.48585 * 240.12902 * 20 18 17 39 39 H 1.08999 * 110.48226 * 2.78191 * 20 18 17 40 40 H 1.08998 * 110.90834 * 139.07688 * 21 20 18 41 41 H 1.08996 * 110.90778 * 262.68483 * 21 20 18 42 42 H 1.09002 * 110.62003 * 81.48117 * 22 21 20 43 43 H 1.09009 * 110.61664 * 204.31733 * 22 21 20 44 44 H 1.09006 * 109.48695 * 299.35651 * 24 16 15 45 45 H 1.08994 * 109.51055 * 179.30282 * 24 16 15 46 46 H 1.08997 * 109.48673 * 303.15561 * 25 13 2 47 47 H 1.08999 * 109.49041 * 63.22079 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6065 0.0353 2.4783 6 1 1.0826 0.9743 2.3775 7 6 1.8789 -0.4713 3.7313 8 7 1.5001 0.1889 4.8040 9 14 2.7845 -2.0957 3.9056 10 1 4.2469 -1.8436 3.9621 11 1 2.3505 -2.7730 5.1538 12 1 2.4762 -2.9618 2.7395 13 7 2.0196 -0.6924 -1.1995 14 6 3.4885 -0.6980 -1.2416 15 6 3.9583 -1.4951 -2.4609 16 7 3.4015 -0.8934 -3.6805 17 6 3.8912 -1.5858 -4.8800 18 6 5.3976 -1.3584 -5.0209 19 1 5.9136 -1.7370 -4.1385 20 6 5.9200 -2.0749 -6.2813 21 6 6.5488 -0.9420 -7.1285 22 6 6.8062 0.1549 -6.0641 23 8 5.6673 0.0445 -5.1803 24 6 1.9326 -0.8878 -3.6384 25 6 1.4628 -0.0907 -2.4191 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6286 -1.7302 1.2796 30 1 3.1284 -0.7736 1.2197 31 1 1.6921 -0.1674 5.6856 32 1 3.8541 0.3263 -1.3140 33 1 3.8767 -1.1597 -0.3338 34 1 3.6158 -2.5263 -2.3751 35 1 5.0470 -1.4761 -2.5103 36 1 3.6918 -2.6536 -4.7899 37 1 3.3806 -1.1938 -5.7596 38 1 6.6742 -2.8151 -6.0142 39 1 5.0979 -2.5441 -6.8217 40 1 7.4837 -1.2695 -7.5834 41 1 5.8504 -0.5908 -7.8880 42 1 7.7307 -0.0452 -5.5224 43 1 6.8407 1.1403 -6.5290 44 1 1.5670 -1.9122 -3.5660 45 1 1.5441 -0.4265 -4.5462 46 1 0.3741 -0.1097 -2.3696 47 1 1.8053 0.9405 -2.5049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592996974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -35.699220 kcal Electronic energy + Delta-G solvation = -23227.189191 eV Core-core repulsion = 20023.807041 eV Total energy + Delta-G solvation = -3203.382149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89498 -38.84885 -36.14353 -33.10876 -32.34111 -31.53850 -30.88393 -29.82858 -27.46061 -26.40475 -24.20193 -23.27315 -22.48508 -21.93211 -20.87307 -19.75023 -19.01446 -17.13401 -16.71756 -16.16695 -15.65479 -15.56623 -14.67601 -14.56734 -14.35994 -14.27424 -13.91841 -13.86285 -13.64014 -13.18315 -12.58419 -12.52128 -12.26452 -12.03792 -11.93381 -11.73980 -11.51350 -11.37503 -11.25073 -11.09859 -11.00890 -10.88616 -10.75183 -10.67441 -10.27155 -9.88431 -9.73084 -9.69213 -9.47945 -9.09030 -8.48366 -8.23186 -7.71749 -6.00334 -3.97330 3.34154 3.41612 3.47233 3.61548 3.95798 4.27465 4.41336 4.48304 4.49560 4.62552 4.78181 4.98807 5.06424 5.17616 5.26207 5.32490 5.33974 5.37900 5.40832 5.46836 5.51781 5.58369 5.62831 5.64757 5.72436 5.78944 5.84129 5.90388 5.99371 6.12449 6.19573 6.30471 6.33682 6.35121 6.70248 6.75457 6.83837 7.07043 7.11564 7.14162 7.22377 7.40234 7.68164 7.74120 7.93060 8.58222 9.04204 9.62451 11.12956 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.003537 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.545952 B = 7914.297138 C = 8432.468907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.095 3.905 3 H 0.033 0.967 4 C -0.005 4.005 5 C -0.514 4.514 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.539 5.539 14 C 0.056 3.944 15 C 0.058 3.942 16 N -0.530 5.530 17 C 0.059 3.941 18 C 0.080 3.920 19 H 0.068 0.932 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.351 6.351 24 C 0.061 3.939 25 C 0.054 3.946 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -4.731 -24.469 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.012 4.012 3 H 0.051 0.949 4 C -0.042 4.042 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.265 5.265 14 C -0.072 4.072 15 C -0.070 4.070 16 N -0.255 5.255 17 C -0.070 4.070 18 C 0.022 3.978 19 H 0.085 0.915 20 C -0.191 4.191 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.270 6.270 24 C -0.067 4.067 25 C -0.075 4.075 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.880 -4.563 -24.160 25.819 hybrid contribution 0.690 -1.018 0.146 1.239 sum 8.570 -5.581 -24.014 26.101 Atomic orbital electron populations 1.21790 0.94953 1.01567 1.00674 1.21589 0.95190 0.95291 0.89134 0.94919 1.19659 0.95609 0.96686 0.92261 1.21099 1.37262 1.07899 0.88980 0.90937 1.24990 0.95428 0.97134 0.95864 1.69921 1.47510 1.39128 0.97872 0.86812 0.80247 0.84823 0.77653 1.20417 1.21505 1.18771 1.62285 1.06956 1.54957 1.02257 1.22148 0.88629 0.99179 0.97293 1.22231 0.99039 0.96405 0.89334 1.62100 1.07845 1.53986 1.01575 1.22270 0.94097 0.96372 0.94225 1.22779 0.95540 0.82564 0.96951 0.91463 1.22989 1.01137 0.98566 0.96360 1.23115 1.01416 0.96001 0.98657 1.23583 0.90156 0.99535 0.90350 1.89110 1.47994 1.22646 1.67234 1.22152 0.87034 0.99285 0.98240 1.22162 0.99753 0.96190 0.89351 0.94649 0.92837 0.90963 0.95678 0.97109 0.92819 0.94307 0.89622 0.94368 0.90764 0.93842 0.90377 0.90633 0.90394 0.90435 0.90559 0.92467 0.89165 0.94380 0.90942 0.90089 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.61 37.15 0.32 -2.24 16 2 C 0.09 1.98 2.11 -67.71 -0.14 1.83 16 3 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.00 -0.11 3.44 -27.88 -0.10 -0.21 16 5 C -0.51 -14.63 8.87 -34.44 -0.31 -14.94 16 6 H 0.07 2.21 7.35 -52.48 -0.39 1.82 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 22.02 27.55 -169.99 -4.68 17.33 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.41 6.43 56.52 0.36 -6.05 16 13 N -0.54 -9.75 4.58 -226.49 -1.04 -10.79 16 14 C 0.06 0.96 5.34 -3.76 -0.02 0.94 16 15 C 0.06 0.83 5.41 -3.77 -0.02 0.81 16 16 N -0.53 -7.22 4.62 -234.47 -1.08 -8.30 16 17 C 0.06 0.64 4.43 -3.82 -0.02 0.62 16 18 C 0.08 0.82 3.29 -26.16 -0.09 0.73 16 19 H 0.07 0.72 6.49 -51.92 -0.34 0.38 16 20 C -0.15 -1.12 6.64 -25.20 -0.17 -1.28 16 21 C -0.15 -1.04 7.16 -24.72 -0.18 -1.22 16 22 C 0.04 0.35 7.72 38.21 0.29 0.64 16 23 O -0.35 -4.35 11.11 -35.23 -0.39 -4.74 16 24 C 0.06 0.81 5.61 -3.76 -0.02 0.79 16 25 C 0.05 0.83 5.21 -3.77 -0.02 0.81 16 26 H 0.03 0.58 6.27 -51.93 -0.33 0.26 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.53 6.92 -51.93 -0.36 1.17 16 29 H 0.02 0.63 6.91 -51.93 -0.36 0.27 16 30 H 0.01 0.26 5.81 -51.93 -0.30 -0.04 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.56 6.09 -51.93 -0.32 1.25 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 36 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.08 1.18 6.05 -51.93 -0.31 0.87 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -31.64 349.78 -10.21 -41.85 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.51 Total: -2.46 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.56 Total: -10.84 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -1.35 Total: -46.41 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.39 Total: -4.74 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.68 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.64 -10.21 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592996974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.150 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds