Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46760 * 124.35532 * 269.72932 * 3 2 1 5 5 C 1.54659 * 105.38462 * 162.85288 * 4 3 2 6 6 H 1.08999 * 110.82174 * 143.77847 * 5 4 3 7 7 C 1.53003 * 111.22273 * 267.57398 * 5 4 3 8 8 N 1.46901 * 109.46918 * 178.87902 * 7 5 4 9 9 C 1.46896 * 110.99939 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47159 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47304 * 300.00071 * 10 9 8 12 12 C 1.52996 * 109.47344 * 60.00268 * 10 9 8 13 13 C 1.53006 * 109.47192 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47047 * 180.02562 * 13 10 9 15 15 H 1.08003 * 120.00207 * 359.97438 * 14 13 10 16 16 C 1.37880 * 119.99896 * 179.97438 * 14 13 10 17 17 N 1.31517 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47124 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46914 * 119.99800 * 18 16 14 21 21 H 1.48492 * 109.47342 * 240.00138 * 18 16 14 22 22 C 1.54616 * 101.68671 * 25.76696 * 5 4 3 23 23 C 1.34428 * 124.34929 * 90.02798 * 3 2 1 24 24 O 1.21281 * 124.93586 * 0.42597 * 23 3 2 25 25 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 30 30 H 1.09001 * 110.24452 * 281.98338 * 4 3 2 31 31 H 1.08997 * 110.24697 * 43.97895 * 4 3 2 32 32 H 1.08994 * 109.47664 * 298.88680 * 7 5 4 33 33 H 1.09004 * 109.46936 * 58.88831 * 7 5 4 34 34 H 1.00905 * 110.99793 * 56.05328 * 8 7 5 35 35 H 1.09001 * 109.47484 * 300.00728 * 9 8 7 36 36 H 1.09003 * 109.47326 * 60.00459 * 9 8 7 37 37 H 1.09003 * 109.46814 * 60.00003 * 11 10 9 38 38 H 1.09002 * 109.47037 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47437 * 300.00041 * 11 10 9 40 40 H 1.09009 * 109.47269 * 59.99788 * 12 10 9 41 41 H 1.09002 * 109.47672 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.47006 * 300.00138 * 12 10 9 43 43 H 1.09002 * 109.47018 * 299.99648 * 13 10 9 44 44 H 1.08997 * 109.47088 * 59.99670 * 13 10 9 45 45 H 0.96997 * 119.99599 * 180.02562 * 17 16 14 46 46 H 1.08999 * 110.48734 * 216.31088 * 22 5 4 47 47 H 1.09006 * 110.49082 * 93.66507 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2998 2.1601 -1.2116 5 6 2.3525 3.6347 -0.7483 6 1 3.1123 4.1875 -1.3008 7 6 0.9846 4.3067 -0.8826 8 7 1.0720 5.6943 -0.4081 9 6 -0.2262 6.3723 -0.5218 10 6 -0.0955 7.8117 -0.0200 11 6 0.3489 7.8031 1.4440 12 6 0.9429 8.5537 -0.8638 13 6 -1.4478 8.5177 -0.1378 14 6 -1.3189 9.9357 0.3559 15 1 -0.3676 10.2971 0.7179 16 6 -2.4153 10.7716 0.3454 17 7 -3.5737 10.3314 -0.0949 18 14 -2.2557 12.5291 0.9580 19 1 -0.8586 12.7754 1.3971 20 1 -2.6023 13.4688 -0.1383 21 1 -3.1790 12.7405 2.1016 22 6 2.7507 3.4820 0.7379 23 6 2.2717 2.0961 1.1099 24 8 2.1362 1.6890 2.2442 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.2574 1.8614 -1.6380 31 1 1.5020 2.0236 -1.9416 32 1 0.6769 4.2989 -1.9281 33 1 0.2527 3.7637 -0.2844 34 1 1.7897 6.2014 -0.9040 35 1 -0.5427 6.3787 -1.5648 36 1 -0.9661 5.8435 0.0791 37 1 1.3123 7.3000 1.5283 38 1 0.4425 8.8286 1.8013 39 1 -0.3908 7.2745 2.0452 40 1 0.6262 8.5598 -1.9069 41 1 1.0357 9.5793 -0.5067 42 1 1.9062 8.0506 -0.7796 43 1 -1.7648 8.5239 -1.1807 44 1 -2.1873 7.9890 0.4636 45 1 -4.3449 10.9197 -0.1025 46 1 2.2496 4.2349 1.3464 47 1 3.8322 3.5554 0.8527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593688080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -56.529169 kcal Electronic energy + Delta-G solvation = -22839.016320 eV Core-core repulsion = 19634.730916 eV Total energy + Delta-G solvation = -3204.285404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66242 -37.81515 -36.68644 -35.08982 -33.29690 -32.04951 -29.83420 -28.07266 -27.01477 -26.33815 -25.98475 -24.12628 -23.47286 -22.11184 -20.89061 -19.48884 -17.88730 -16.87245 -16.48699 -16.23183 -15.74564 -15.38251 -14.75784 -14.44858 -14.17329 -14.08353 -13.66635 -13.46811 -13.45397 -13.14053 -12.83217 -12.65320 -12.25491 -12.16399 -11.98779 -11.88883 -11.62541 -11.45479 -11.31252 -11.03954 -10.94727 -10.86044 -10.74616 -10.49735 -10.26162 -10.10099 -9.81103 -9.68342 -9.03774 -8.92581 -8.81448 -8.31602 -8.14676 -5.95976 -3.95968 2.52436 2.82605 3.32839 3.40810 3.44196 4.03158 4.22827 4.46907 4.50709 4.70238 4.72666 4.89578 4.91771 5.09911 5.19270 5.30289 5.32311 5.40031 5.42502 5.51440 5.57766 5.61228 5.71142 5.78422 5.88769 5.94419 5.98594 6.03150 6.23242 6.32788 6.37357 6.50136 6.66225 6.78441 6.83783 6.95319 7.19250 7.21304 7.27269 7.36883 7.63142 7.71130 7.85744 8.04486 8.08905 8.48799 9.09726 9.66969 11.15765 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.003024 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.502719 B = 9256.161623 C = 9377.275144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.623 5.623 4 C 0.108 3.892 5 C -0.097 4.097 6 H 0.096 0.904 7 C 0.065 3.935 8 N -0.685 5.685 9 C 0.071 3.929 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.128 4.128 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.060 0.940 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.146 4.146 23 C 0.518 3.482 24 O -0.536 6.536 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.339 0.661 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.258 0.742 46 H 0.120 0.880 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.871 -18.176 -5.303 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.359 5.359 4 C -0.016 4.016 5 C -0.116 4.116 6 H 0.114 0.886 7 C -0.064 4.064 8 N -0.317 5.317 9 C -0.057 4.057 10 C -0.059 4.059 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.186 4.186 23 C 0.307 3.693 24 O -0.412 6.412 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.138 0.862 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.498 -18.588 -4.069 22.766 hybrid contribution -0.281 1.092 -0.847 1.410 sum 12.217 -17.496 -4.916 21.898 Atomic orbital electron populations 1.22164 0.95717 1.02255 1.02735 1.21302 0.94465 0.81371 1.02827 1.48366 1.66225 1.13834 1.07444 1.22149 1.01390 0.90590 0.87462 1.22194 0.98908 0.94366 0.96151 0.88583 1.21909 0.95473 0.90941 0.98100 1.60515 1.08616 1.01500 1.61057 1.22099 0.89494 0.95711 0.98428 1.20631 0.98658 0.91458 0.95151 1.21600 0.99290 1.01022 0.95426 1.21765 0.96610 1.01211 0.98974 1.19127 0.89727 0.94765 0.96800 1.21277 0.95539 0.96441 1.41145 0.92219 1.25023 0.95515 0.98383 0.95730 1.69978 1.00401 1.35853 1.47544 0.86609 0.78086 0.85290 0.78460 1.19757 1.21219 1.21154 1.22379 1.03140 0.95547 0.97499 1.21109 0.76080 0.87955 0.84175 1.90712 1.53513 1.75711 1.21274 0.92070 0.91526 0.92366 0.90191 0.90580 0.90953 0.90403 0.95032 0.91156 0.84213 0.95838 0.91633 0.93858 0.92704 0.94191 0.94159 0.91720 0.94774 0.96966 0.96708 0.93233 0.86189 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.12 1.00 6.65 -4.04 -0.03 0.97 16 3 N -0.62 -5.98 2.93 -172.31 -0.51 -6.49 16 4 C 0.11 0.75 6.92 -3.03 -0.02 0.73 16 5 C -0.10 -0.78 3.33 -88.90 -0.30 -1.08 16 6 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 7 C 0.07 0.69 5.05 -3.82 -0.02 0.67 16 8 N -0.69 -8.86 5.19 -113.78 -0.59 -9.45 16 9 C 0.07 1.18 4.65 -3.83 -0.02 1.16 16 10 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 11 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 12 C -0.13 -2.28 7.89 37.16 0.29 -1.99 16 13 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 14 C -0.51 -13.76 7.65 -34.44 -0.26 -14.02 16 15 H 0.06 1.58 5.68 -52.48 -0.30 1.29 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.15 -1.48 6.34 -26.75 -0.17 -1.65 16 23 C 0.52 6.55 8.02 -10.86 -0.09 6.46 16 24 O -0.54 -9.05 17.59 5.56 0.10 -8.95 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.48 7.92 -51.93 -0.41 0.07 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.34 4.06 6.77 -39.29 -0.27 3.79 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 42 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.12 1.46 7.52 -51.93 -0.39 1.07 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -32.01 368.42 -8.64 -40.65 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.68 Total: -1.00 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.23 Total: -10.77 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.36 Total: -42.05 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.10 Total: -8.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.01 -8.64 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593688080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.883 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds