Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46904 * 2 1 4 4 C 1.46760 * 124.34669 * 89.99982 * 3 2 1 5 5 C 1.54480 * 105.54782 * 162.91674 * 4 3 2 6 6 H 1.09000 * 110.97126 * 267.34164 * 5 4 3 7 7 C 1.53006 * 110.96865 * 143.57822 * 5 4 3 8 8 N 1.46907 * 109.46797 * 175.00320 * 7 5 4 9 9 C 1.46896 * 110.99439 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.46705 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46925 * 299.99387 * 10 9 8 12 12 C 1.52997 * 109.47586 * 60.00064 * 10 9 8 13 13 C 1.53011 * 109.46860 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.46742 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00304 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99541 * 179.97438 * 14 13 10 17 17 N 1.31508 * 120.00445 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47278 * 90.00295 * 18 16 14 20 20 H 1.48499 * 109.47736 * 210.00232 * 18 16 14 21 21 H 1.48500 * 109.47230 * 330.00307 * 18 16 14 22 22 C 1.54861 * 101.66110 * 25.43666 * 5 4 3 23 23 C 1.34415 * 124.35027 * 269.97473 * 3 2 1 24 24 O 1.21288 * 124.94382 * 0.45207 * 23 3 2 25 25 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47483 * 300.00033 * 1 2 3 27 27 H 1.09006 * 109.47496 * 59.99877 * 1 2 3 28 28 H 1.09003 * 109.46934 * 240.00125 * 2 1 3 29 29 H 1.08995 * 109.47116 * 119.99866 * 2 1 3 30 30 H 1.09002 * 110.24740 * 281.96247 * 4 3 2 31 31 H 1.09002 * 110.24616 * 43.87772 * 4 3 2 32 32 H 1.08995 * 109.46963 * 294.99744 * 7 5 4 33 33 H 1.08998 * 109.46882 * 54.99990 * 7 5 4 34 34 H 1.00894 * 111.00094 * 56.04329 * 8 7 5 35 35 H 1.09003 * 109.47365 * 299.99733 * 9 8 7 36 36 H 1.08997 * 109.47795 * 59.99942 * 9 8 7 37 37 H 1.09000 * 109.46731 * 60.00123 * 11 10 9 38 38 H 1.09003 * 109.47232 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47262 * 300.00636 * 11 10 9 40 40 H 1.08997 * 109.47478 * 59.99356 * 12 10 9 41 41 H 1.08995 * 109.47349 * 180.02562 * 12 10 9 42 42 H 1.09006 * 109.46653 * 299.99803 * 12 10 9 43 43 H 1.08997 * 109.46547 * 299.99629 * 13 10 9 44 44 H 1.08992 * 109.47073 * 59.99822 * 13 10 9 45 45 H 0.96999 * 120.00676 * 179.97438 * 17 16 14 46 46 H 1.08998 * 110.46775 * 216.51886 * 22 5 4 47 47 H 1.08998 * 110.49332 * 93.88070 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1758 3.3439 0.7510 6 1 4.2342 3.1020 0.8475 7 6 2.8342 4.6171 1.5277 8 7 3.7684 5.6863 1.1505 9 6 3.4705 6.9267 1.8787 10 6 4.4615 8.0145 1.4598 11 6 5.8855 7.5605 1.7872 12 6 4.3390 8.2644 -0.0446 13 6 4.1516 9.3065 2.2189 14 6 5.1282 10.3777 1.8067 15 1 5.8935 10.1589 1.0769 16 6 5.0444 11.6371 2.3615 17 7 4.1128 11.9035 3.2506 18 14 6.2553 12.9648 1.8513 19 1 5.7104 13.7116 0.6890 20 1 6.4704 13.9006 2.9841 21 1 7.5478 12.3379 1.4749 22 6 2.7701 3.4752 -0.7378 23 6 2.2715 2.0962 -1.1097 24 8 2.1217 1.6943 -2.2443 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3636 2.5311 1.6427 31 1 2.8306 1.5525 1.9390 32 1 1.8156 4.9246 1.2913 33 1 2.9164 4.4233 2.5972 34 1 3.7580 5.8404 0.1534 35 1 2.4561 7.2505 1.6453 36 1 3.5574 6.7487 2.9505 37 1 6.1065 6.6400 1.2469 38 1 6.5916 8.3357 1.4892 39 1 5.9728 7.3825 2.8590 40 1 3.3245 8.5878 -0.2778 41 1 5.0453 9.0390 -0.3430 42 1 4.5601 7.3439 -0.5849 43 1 3.1371 9.6300 1.9861 44 1 4.2393 9.1282 3.2905 45 1 4.0541 12.7894 3.6412 46 1 3.6335 3.7454 -1.3457 47 1 1.9754 4.2122 -0.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593688082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = -57.941037 kcal Electronic energy + Delta-G solvation = -22502.024992 eV Core-core repulsion = 19297.678365 eV Total energy + Delta-G solvation = -3204.346627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71511 -37.87982 -36.77081 -35.23712 -33.33094 -32.08050 -29.92981 -28.26193 -27.00711 -26.34853 -25.94755 -24.18377 -23.44839 -22.14011 -20.88685 -19.60503 -17.91397 -17.01535 -16.83289 -16.23191 -15.64675 -15.37684 -14.83909 -14.36836 -14.18394 -14.06654 -13.85917 -13.82678 -13.51934 -13.11018 -12.80499 -12.64221 -12.50514 -12.32252 -12.02471 -11.80617 -11.68393 -11.51341 -11.26367 -11.16700 -10.95564 -10.86528 -10.77979 -10.50254 -10.26725 -10.13288 -9.93751 -9.69783 -9.03778 -9.02594 -8.84176 -8.32266 -8.17262 -5.96820 -3.96899 2.38549 2.70350 3.33098 3.39886 3.42747 4.03600 4.11278 4.33367 4.48750 4.64446 4.72427 4.82206 4.87506 5.01190 5.12582 5.22572 5.27332 5.32972 5.39098 5.46223 5.47673 5.54016 5.65318 5.72171 5.79345 5.81527 5.95367 5.97419 6.22597 6.26364 6.31558 6.48857 6.64701 6.77232 6.82132 6.83793 7.17914 7.19878 7.25388 7.35587 7.60577 7.69634 7.84385 7.95248 8.03418 8.47746 9.08516 9.66029 11.14841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043033 B = 0.002672 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.511146 B =10478.365456 C =10706.695374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.107 3.893 5 C -0.097 4.097 6 H 0.102 0.898 7 C 0.068 3.932 8 N -0.686 5.686 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.154 4.154 23 C 0.519 3.481 24 O -0.536 6.536 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.339 0.661 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.259 0.741 46 H 0.105 0.895 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 -21.788 -2.986 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.016 4.016 5 C -0.116 4.116 6 H 0.120 0.880 7 C -0.062 4.062 8 N -0.318 5.318 9 C -0.059 4.059 10 C -0.059 4.059 11 C -0.173 4.173 12 C -0.187 4.187 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.194 4.194 23 C 0.307 3.693 24 O -0.413 6.413 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.798 -22.146 -3.022 22.860 hybrid contribution -0.343 1.181 -0.482 1.321 sum -5.142 -20.965 -3.505 21.869 Atomic orbital electron populations 1.22162 0.95795 1.02335 1.02535 1.21337 0.94397 0.81237 1.03078 1.48361 1.66011 1.13763 1.07461 1.22133 0.99628 0.92690 0.87181 1.22258 1.01114 0.94627 0.93577 0.87979 1.21897 0.94066 0.90343 0.99855 1.60551 1.52007 1.07639 1.11636 1.22116 0.97192 0.88441 0.98101 1.20630 0.94382 0.95296 0.95565 1.21602 0.96322 0.99427 0.99995 1.21776 1.01285 0.99788 0.95851 1.19129 0.96653 0.89776 0.94874 1.21234 1.14606 0.95249 1.23383 0.92286 1.25015 0.95676 0.98654 0.95284 1.69959 1.33534 1.21422 1.28868 0.86666 0.81747 0.81972 0.78036 1.20832 1.21391 1.19908 1.22527 1.03663 0.95456 0.97804 1.20989 0.76378 0.87682 0.84241 1.90717 1.53863 1.75476 1.21245 0.91431 0.92353 0.92250 0.90106 0.90347 0.90980 0.90134 0.95145 0.90468 0.84175 0.95810 0.91469 0.93880 0.92695 0.94184 0.94100 0.91689 0.94800 0.96935 0.96671 0.93169 0.87664 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.12 0.90 6.65 -4.04 -0.03 0.87 16 3 N -0.62 -5.58 2.93 -172.41 -0.51 -6.09 16 4 C 0.11 0.74 6.91 -3.12 -0.02 0.72 16 5 C -0.10 -0.78 3.37 -88.86 -0.30 -1.08 16 6 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.07 0.66 5.04 -3.82 -0.02 0.64 16 8 N -0.69 -8.67 5.71 -113.77 -0.65 -9.32 16 9 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 10 C -0.06 -1.11 0.60 -154.50 -0.09 -1.21 16 11 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 12 C -0.13 -2.32 7.89 37.16 0.29 -2.03 16 13 C 0.03 0.82 4.04 -27.88 -0.11 0.70 16 14 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.62 13.28 55.43 0.74 -25.88 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 C -0.15 -1.45 5.90 -26.62 -0.16 -1.60 16 23 C 0.52 6.06 8.02 -10.86 -0.09 5.97 16 24 O -0.54 -8.39 17.60 5.55 0.10 -8.29 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.30 7.94 -51.93 -0.41 -0.12 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.34 4.16 6.27 -39.29 -0.25 3.92 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 38 H 0.05 1.11 6.61 -51.93 -0.34 0.77 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 42 H 0.03 0.51 6.57 -51.93 -0.34 0.16 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.10 0.93 7.76 -51.93 -0.40 0.53 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -31.49 368.04 -8.68 -40.16 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.66 Total: -1.51 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.22 Total: -11.05 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.42 Total: -41.29 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.10 Total: -8.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.49 -8.68 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593688082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.778 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds