Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47419 * 2 1 4 4 N 1.46505 * 109.46976 * 119.99921 * 2 1 3 5 5 C 1.34776 * 119.99743 * 274.99731 * 4 2 1 6 6 O 1.21276 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99624 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46704 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46871 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99453 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00147 * 180.02562 * 10 9 8 13 13 N 1.31523 * 119.99982 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00126 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47470 * 60.00106 * 14 12 10 16 16 H 1.48506 * 109.47215 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47120 * 299.99939 * 14 12 10 18 18 C 1.52994 * 109.47237 * 239.99640 * 2 1 3 19 19 C 1.53124 * 109.52564 * 179.68487 * 18 2 1 20 20 C 1.53035 * 109.27794 * 182.44326 * 19 18 2 21 21 N 1.46844 * 109.52494 * 59.18054 * 20 19 18 22 22 C 1.46897 * 111.00090 * 174.16001 * 21 20 19 23 23 C 1.46854 * 111.19703 * 298.25280 * 21 20 19 24 24 C 1.53037 * 109.51886 * 61.74789 * 23 21 20 25 25 H 1.08999 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46830 * 300.00601 * 1 2 3 27 27 H 1.09002 * 109.46895 * 59.99773 * 1 2 3 28 28 H 0.97000 * 119.99705 * 95.00150 * 4 2 1 29 29 H 1.09001 * 109.47451 * 300.00454 * 7 5 4 30 30 H 1.09004 * 109.46580 * 60.00432 * 7 5 4 31 31 H 1.08995 * 109.47091 * 300.00249 * 8 7 5 32 32 H 1.09004 * 109.47275 * 60.00826 * 8 7 5 33 33 H 1.09001 * 109.47346 * 300.00461 * 9 8 7 34 34 H 1.09004 * 109.46518 * 60.00336 * 9 8 7 35 35 H 0.96995 * 119.99792 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.58045 * 299.84565 * 18 2 1 37 37 H 1.08999 * 109.50059 * 302.38272 * 19 18 2 38 38 H 1.08993 * 109.49981 * 62.49919 * 19 18 2 39 39 H 1.09002 * 109.46466 * 299.16376 * 20 19 18 40 40 H 1.09002 * 109.46192 * 179.19659 * 20 19 18 41 41 H 1.09004 * 109.47425 * 184.20891 * 22 21 20 42 42 H 1.08999 * 109.47215 * 304.20975 * 22 21 20 43 43 H 1.09004 * 109.47700 * 64.20982 * 22 21 20 44 44 H 1.08994 * 109.46310 * 301.73015 * 23 21 20 45 45 H 1.09004 * 109.45830 * 181.75702 * 23 21 20 46 46 H 1.09000 * 109.50480 * 180.88135 * 24 23 21 47 47 H 1.09002 * 109.53848 * 60.77851 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4116 7 6 2.6489 -0.7288 3.5878 8 6 2.6999 0.2543 4.7591 9 6 3.2099 -0.4669 6.0084 10 6 3.2596 0.5011 7.1622 11 1 2.9572 1.5280 7.0189 12 6 3.6910 0.0760 8.4007 13 7 4.0588 -1.1747 8.5753 14 14 3.7533 1.2761 9.8308 15 1 2.3917 1.8096 10.0890 16 1 4.2494 0.5763 11.0431 17 1 4.6689 2.3966 9.4971 18 6 2.0401 -0.7213 -1.2491 19 6 3.5713 -0.7151 -1.2543 20 6 4.0749 -1.3838 -2.5355 21 7 3.5607 -0.6570 -3.7032 22 6 4.1348 -1.1862 -4.9474 23 6 2.0931 -0.6899 -3.7452 24 6 1.5303 -0.0004 -2.5002 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1526 29 1 1.9760 -1.5506 3.8327 30 1 3.6480 -1.1213 3.3986 31 1 3.3725 1.0763 4.5144 32 1 1.7005 0.6464 4.9481 33 1 2.5376 -1.2893 6.2532 34 1 4.2093 -0.8587 5.8190 35 1 4.3627 -1.4737 9.4466 36 1 1.6800 -1.7501 -1.2495 37 1 3.9311 0.3130 -1.2148 38 1 3.9402 -1.2640 -0.3880 39 1 3.7261 -2.4160 -2.5677 40 1 5.1647 -1.3683 -2.5490 41 1 3.7957 -0.5829 -5.7896 42 1 5.2227 -1.1504 -4.8896 43 1 3.8122 -2.2181 -5.0865 44 1 1.7537 -1.7253 -3.7717 45 1 1.7436 -0.1703 -4.6374 46 1 0.4413 -0.0387 -2.5239 47 1 1.8576 1.0392 -2.4800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594290994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -68.695640 kcal Electronic energy + Delta-G solvation = -22302.012110 eV Core-core repulsion = 19097.199129 eV Total energy + Delta-G solvation = -3204.812982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.12778 -38.96990 -36.21515 -34.12324 -33.08635 -31.98974 -31.36626 -30.13099 -27.67161 -26.86914 -24.38277 -23.40619 -23.25032 -21.32533 -20.49281 -20.10321 -19.54311 -16.95920 -16.20204 -16.14868 -15.78360 -15.45275 -15.24402 -14.97298 -14.40882 -14.30698 -13.91262 -13.62744 -13.60452 -13.27326 -12.87093 -12.70071 -12.54375 -12.22707 -12.15507 -11.80984 -11.75173 -11.60048 -11.47985 -11.27697 -10.85744 -10.75551 -10.69599 -10.58079 -10.54287 -10.51875 -9.63585 -9.60906 -9.21838 -8.98548 -8.94190 -8.69504 -8.29041 -5.95017 -3.96309 3.00471 3.33752 3.38561 3.41720 3.45962 3.56710 4.32156 4.45152 4.50602 4.52114 4.78222 4.92448 4.95837 5.04117 5.14248 5.15405 5.20605 5.24401 5.33867 5.40199 5.40887 5.45812 5.48797 5.50454 5.64324 5.66804 5.75492 5.75834 5.77243 5.85173 5.96726 6.10243 6.20141 6.32137 6.61390 6.69717 6.71907 6.77329 6.97827 7.20495 7.68566 7.74432 7.87281 8.05949 8.49896 8.54760 9.10640 9.67421 11.16481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.002544 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.444337 B =11004.424205 C =11425.309310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.735 5.735 5 C 0.513 3.487 6 O -0.538 6.538 7 C -0.139 4.139 8 C -0.094 4.094 9 C 0.020 3.980 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.094 4.094 19 C -0.112 4.112 20 C 0.056 3.944 21 N -0.544 5.544 22 C 0.025 3.975 23 C 0.057 3.943 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.397 0.603 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.023 0.977 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -3.956 -27.810 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.105 0.895 4 N -0.388 5.388 5 C 0.301 3.699 6 O -0.414 6.414 7 C -0.179 4.179 8 C -0.132 4.132 9 C -0.017 4.017 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.113 4.113 19 C -0.150 4.150 20 C -0.072 4.072 21 N -0.269 5.269 22 C -0.123 4.123 23 C -0.071 4.071 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.231 0.769 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.535 -2.720 -27.578 27.937 hybrid contribution -0.064 -0.859 0.682 1.099 sum -3.599 -3.579 -26.896 27.371 Atomic orbital electron populations 1.22231 0.95612 1.01905 1.02554 1.20890 0.93767 0.97560 0.83558 0.89490 1.46208 1.68897 1.13890 1.09822 1.21227 0.76598 0.87487 0.84549 1.90668 1.49396 1.16360 1.84966 1.21845 1.02116 1.00683 0.93252 1.21434 1.01490 0.96875 0.93450 1.19129 0.96135 0.95607 0.90785 1.21243 1.43279 0.96575 0.94497 0.92637 1.25022 0.95498 0.95182 0.98847 1.69957 1.44890 1.15354 1.23606 0.86649 0.78454 0.81186 0.81673 1.20239 1.21355 1.20226 1.21477 0.95954 0.99710 0.94184 1.21637 0.94622 1.02310 0.96412 1.22113 0.99903 0.94886 0.90303 1.61929 1.06972 1.55330 1.02657 1.22351 1.00353 0.97624 0.92013 1.22093 0.87261 0.98958 0.98819 1.21661 1.00059 1.00496 0.92681 0.92704 0.91909 0.91700 0.76948 0.89508 0.89487 0.92740 0.92769 0.96664 0.96641 0.93044 0.91069 0.90771 0.91058 0.94983 0.90666 0.91388 0.91343 0.95815 0.94984 0.90717 0.90874 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.13 37.16 0.34 -1.31 16 2 C 0.15 1.54 2.16 -67.93 -0.15 1.40 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.74 -8.49 4.43 -53.80 -0.24 -8.73 16 5 C 0.51 8.23 7.79 -10.98 -0.09 8.14 16 6 O -0.54 -10.81 15.64 5.56 0.09 -10.72 16 7 C -0.14 -2.32 5.70 -27.88 -0.16 -2.48 16 8 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 14 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.09 -0.75 1.89 -90.49 -0.17 -0.93 16 19 C -0.11 -0.95 5.19 -26.65 -0.14 -1.09 16 20 C 0.06 0.44 5.46 -3.84 -0.02 0.42 16 21 N -0.54 -4.37 4.91 -242.96 -1.19 -5.56 16 22 C 0.02 0.16 9.59 60.06 0.58 0.73 16 23 C 0.06 0.40 5.46 -3.83 -0.02 0.38 16 24 C -0.11 -0.82 4.95 -26.65 -0.13 -0.95 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.54 6.49 -51.93 -0.34 0.20 16 28 H 0.40 3.55 8.42 -40.82 -0.34 3.21 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 43 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 46 H 0.07 0.47 6.58 -51.93 -0.34 0.12 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -33.24 369.46 -9.64 -42.88 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.95 Total: -2.63 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.63 Total: -11.42 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.70 Total: -40.89 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.24 -9.64 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594290994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.818 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds