Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47011 * 2 1 4 4 N 1.46498 * 109.47448 * 239.99499 * 2 1 3 5 5 C 1.34778 * 119.99694 * 85.00018 * 4 2 1 6 6 O 1.21277 * 120.00328 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99515 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46889 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47297 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47307 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99821 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00103 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99988 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99705 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47494 * 90.00224 * 14 12 10 16 16 H 1.48505 * 109.46855 * 210.00220 * 14 12 10 17 17 H 1.48498 * 109.47535 * 330.00009 * 14 12 10 18 18 C 1.53002 * 109.46847 * 119.99432 * 2 1 3 19 19 C 1.53120 * 109.52672 * 300.00337 * 18 2 1 20 20 C 1.53034 * 109.27801 * 177.55755 * 19 18 2 21 21 N 1.46844 * 109.52562 * 300.81915 * 20 19 18 22 22 C 1.46901 * 110.99853 * 185.84262 * 21 20 19 23 23 C 1.46844 * 111.19606 * 61.74408 * 21 20 19 24 24 C 1.53038 * 109.52314 * 298.25515 * 23 21 20 25 25 H 1.09001 * 109.47056 * 60.00311 * 1 2 3 26 26 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47401 * 300.00519 * 1 2 3 28 28 H 0.97000 * 120.00113 * 265.00760 * 4 2 1 29 29 H 1.09003 * 109.46900 * 299.99462 * 7 5 4 30 30 H 1.09000 * 109.47534 * 60.00029 * 7 5 4 31 31 H 1.09007 * 109.47081 * 299.99471 * 8 7 5 32 32 H 1.09000 * 109.47303 * 59.99528 * 8 7 5 33 33 H 1.08998 * 109.47082 * 300.00092 * 9 8 7 34 34 H 1.09000 * 109.47087 * 59.99693 * 9 8 7 35 35 H 0.96995 * 119.99748 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.52256 * 179.87043 * 18 2 1 37 37 H 1.08995 * 109.50416 * 57.61131 * 19 18 2 38 38 H 1.09001 * 109.50010 * 297.49782 * 19 18 2 39 39 H 1.09007 * 109.46058 * 180.79762 * 20 19 18 40 40 H 1.09003 * 109.45173 * 60.83384 * 20 19 18 41 41 H 1.09002 * 109.47401 * 59.99789 * 22 21 20 42 42 H 1.09001 * 109.46874 * 299.99802 * 22 21 20 43 43 H 1.09004 * 109.46970 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.46425 * 58.27678 * 23 21 20 45 45 H 1.09008 * 109.45740 * 178.24323 * 23 21 20 46 46 H 1.09000 * 109.50747 * 299.24167 * 24 23 21 47 47 H 1.09004 * 109.50459 * 179.12275 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8591 1.1584 -2.4115 7 6 2.6490 -0.7291 -3.5876 8 6 2.7012 0.2542 -4.7587 9 6 3.2114 -0.4671 -6.0079 10 6 3.2622 0.5012 -7.1615 11 1 2.9604 1.5282 -7.0182 12 6 3.6930 0.0757 -8.4002 13 7 3.7369 0.9205 -9.4071 14 14 4.2143 -1.7009 -8.6482 15 1 3.0374 -2.5100 -9.0551 16 1 5.2521 -1.7688 -9.7083 17 1 4.7679 -2.2363 -7.3785 18 6 2.0399 -0.7211 1.2493 19 6 1.5301 -0.0002 2.5003 20 6 1.9924 -0.7606 3.7453 21 7 1.4723 -2.1332 3.7035 22 6 1.7797 -2.8509 4.9478 23 6 1.9862 -2.8603 2.5358 24 6 1.5236 -2.1627 1.2546 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6319 -1.1525 29 1 3.6482 -1.1215 -3.3984 30 1 1.9762 -1.5509 -3.8324 31 1 1.7022 0.6470 -4.9481 32 1 3.3743 1.0758 -4.5136 33 1 4.2104 -0.8597 -5.8182 34 1 2.5386 -1.2889 -6.2531 35 1 4.0403 0.6213 -10.2784 36 1 3.1300 -0.7237 1.2491 37 1 0.4410 0.0373 2.4803 38 1 1.9294 1.0138 2.5240 39 1 1.6191 -0.2577 4.6375 40 1 3.0818 -0.7857 3.7717 41 1 1.3240 -2.3299 5.7899 42 1 2.8601 -2.8906 5.0868 43 1 1.3829 -3.8645 4.8902 44 1 3.0755 -2.8757 2.5680 45 1 1.6081 -3.8827 2.5494 46 1 0.4344 -2.1592 1.2149 47 1 1.9182 -2.6937 0.3883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594290996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -61.746143 kcal Electronic energy + Delta-G solvation = -22350.050283 eV Core-core repulsion = 19145.538654 eV Total energy + Delta-G solvation = -3204.511629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27827 -39.04947 -36.32606 -34.24774 -33.13228 -32.04114 -31.28413 -30.18377 -28.16134 -26.88615 -24.51829 -23.76961 -23.31866 -21.50232 -20.36865 -19.79330 -19.38818 -17.07825 -16.50901 -16.26037 -15.83492 -15.49082 -15.37519 -15.01476 -14.88252 -14.21571 -13.88974 -13.87570 -13.41659 -13.23993 -12.99290 -12.83623 -12.65432 -12.52163 -12.05072 -12.01025 -11.93531 -11.80742 -11.55331 -11.23497 -10.95891 -10.93440 -10.77569 -10.76145 -10.45984 -9.96838 -9.80292 -9.67326 -9.35919 -9.10130 -9.00976 -8.75925 -8.49022 -5.98675 -3.96193 2.92674 3.27228 3.32938 3.39916 3.42977 3.50725 4.29377 4.38087 4.45590 4.48875 4.73710 4.82629 4.90695 4.97510 5.07343 5.08639 5.16356 5.20439 5.24183 5.34608 5.38031 5.41016 5.43063 5.43741 5.58492 5.60269 5.63067 5.66396 5.71171 5.79122 5.93561 5.97731 6.16624 6.24064 6.55614 6.59878 6.63913 6.65339 6.73066 6.95669 7.40885 7.48780 7.61916 7.85192 8.46982 8.61782 9.08320 9.63436 11.15056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035884 B = 0.002623 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.107071 B =10672.420994 C =11190.347088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 H 0.086 0.914 4 N -0.736 5.736 5 C 0.513 3.487 6 O -0.535 6.535 7 C -0.142 4.142 8 C -0.087 4.087 9 C -0.015 4.015 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.063 3.937 13 N -0.905 5.905 14 Si 0.882 3.118 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.095 4.095 19 C -0.112 4.112 20 C 0.056 3.944 21 N -0.543 5.543 22 C 0.025 3.975 23 C 0.055 3.945 24 C -0.116 4.116 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -9.639 30.059 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.104 0.896 4 N -0.390 5.390 5 C 0.300 3.700 6 O -0.411 6.411 7 C -0.182 4.182 8 C -0.125 4.125 9 C -0.052 4.052 10 C -0.556 4.556 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.544 5.544 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.115 4.115 19 C -0.150 4.150 20 C -0.072 4.072 21 N -0.268 5.268 22 C -0.124 4.124 23 C -0.072 4.072 24 C -0.154 4.154 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.231 0.769 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.803 -8.725 29.773 31.394 hybrid contribution 1.335 -1.496 -0.136 2.009 sum -3.468 -10.221 29.637 31.541 Atomic orbital electron populations 1.22277 0.95408 1.02214 1.02491 1.20850 0.94195 0.97204 0.83493 0.89600 1.46260 1.68902 1.13952 1.09867 1.21150 0.76739 0.87516 0.84558 1.90685 1.49216 1.16257 1.84925 1.21873 1.02113 1.00704 0.93530 1.21257 1.02095 0.96784 0.92364 1.19609 0.95644 0.96317 0.93631 1.21171 1.43688 0.97861 0.92869 0.90941 1.25061 0.95252 0.97425 0.95990 1.69923 1.48118 1.34901 1.01446 0.86754 0.78614 0.85755 0.77973 1.20364 1.21475 1.19061 1.21468 1.00401 0.95342 0.94249 1.21676 1.02397 0.98342 0.92622 1.22096 0.97178 0.89067 0.98853 1.61926 1.59779 1.02474 1.02618 1.22354 0.98802 0.99203 0.92013 1.22099 0.97228 0.97586 0.90332 1.21732 1.02471 0.94811 0.96365 0.92054 0.92212 0.91600 0.76911 0.89515 0.89463 0.92124 0.92124 0.96707 0.97130 0.92820 0.90915 0.90198 0.91097 0.90645 0.94940 0.91346 0.95765 0.91362 0.94939 0.90686 0.90143 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.78 37.16 0.33 -1.31 16 2 C 0.15 1.50 2.41 -67.93 -0.16 1.33 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.74 -8.20 5.00 -53.80 -0.27 -8.47 16 5 C 0.51 7.95 7.79 -10.98 -0.09 7.86 16 6 O -0.54 -10.54 15.64 5.56 0.09 -10.46 16 7 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 8 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 10 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 11 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 12 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -28.57 13.96 55.43 0.77 -27.80 16 14 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 18 C -0.10 -0.73 2.25 -90.49 -0.20 -0.94 16 19 C -0.11 -0.79 5.09 -26.65 -0.14 -0.93 16 20 C 0.06 0.38 5.46 -3.84 -0.02 0.36 16 21 N -0.54 -3.90 4.91 -242.96 -1.19 -5.09 16 22 C 0.02 0.14 9.59 60.07 0.58 0.72 16 23 C 0.06 0.37 5.46 -3.83 -0.02 0.35 16 24 C -0.12 -0.80 4.87 -26.65 -0.13 -0.93 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.53 6.37 -51.93 -0.33 0.20 16 27 H 0.07 0.56 6.38 -51.93 -0.33 0.23 16 28 H 0.40 3.37 6.93 -40.82 -0.28 3.09 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.59 6.31 -51.93 -0.33 0.26 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 46 H 0.08 0.61 6.31 -51.93 -0.33 0.28 16 47 H 0.07 0.41 6.62 -51.93 -0.34 0.06 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -33.95 360.10 -9.12 -43.07 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.60 Total: -1.83 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.68 Total: -12.10 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.69 Total: -41.37 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -9.12 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594290996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.679 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds