Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00138 * 2 1 4 4 C 1.53004 * 112.90629 * 181.58904 * 3 2 1 5 5 H 1.08994 * 109.47008 * 173.74953 * 4 3 2 6 6 C 1.53003 * 109.46781 * 293.74475 * 4 3 2 7 7 N 1.46899 * 109.47292 * 53.74259 * 4 3 2 8 8 C 1.46905 * 110.99712 * 154.99952 * 7 4 3 9 9 C 1.53036 * 109.46220 * 275.07293 * 8 7 4 10 10 C 1.53189 * 109.31333 * 178.61474 * 9 8 7 11 11 N 1.46930 * 108.77530 * 54.63212 * 10 9 8 12 12 C 1.36939 * 120.63142 * 126.41312 * 11 10 9 13 13 H 1.08003 * 119.99578 * 332.61317 * 12 11 10 14 14 C 1.38808 * 120.00380 * 152.60908 * 12 11 10 15 15 N 1.31614 * 120.00134 * 159.34485 * 14 12 11 16 16 Si 1.86799 * 119.99653 * 339.34462 * 14 12 11 17 17 H 1.48505 * 109.46968 * 92.94229 * 16 14 12 18 18 H 1.48496 * 109.47397 * 212.94080 * 16 14 12 19 19 H 1.48502 * 109.47231 * 332.94349 * 16 14 12 20 20 C 1.46926 * 118.73977 * 306.39159 * 11 10 9 21 21 C 1.53037 * 109.45946 * 155.00185 * 8 7 4 22 22 C 1.53781 * 113.61649 * 50.33286 * 3 2 1 23 23 C 1.53777 * 87.07957 * 220.01889 * 22 3 2 24 24 C 1.53776 * 87.08642 * 25.43472 * 23 22 3 25 25 H 1.08999 * 109.47034 * 59.99639 * 1 2 3 26 26 H 1.08997 * 109.47795 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46918 * 300.00446 * 1 2 3 28 28 H 1.09000 * 109.46980 * 179.97438 * 6 4 3 29 29 H 1.08999 * 109.47301 * 300.00502 * 6 4 3 30 30 H 1.09001 * 109.47273 * 59.99842 * 6 4 3 31 31 H 1.00903 * 110.99684 * 31.05073 * 7 4 3 32 32 H 1.09003 * 109.45605 * 35.03194 * 8 7 4 33 33 H 1.09001 * 109.49539 * 298.56781 * 9 8 7 34 34 H 1.08996 * 109.50014 * 58.66148 * 9 8 7 35 35 H 1.08996 * 109.58563 * 294.84787 * 10 9 8 36 36 H 1.09003 * 109.70509 * 174.48941 * 10 9 8 37 37 H 0.97002 * 119.99633 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.58870 * 293.82075 * 20 11 10 39 39 H 1.09000 * 109.70451 * 173.45983 * 20 11 10 40 40 H 1.08998 * 109.49968 * 301.33986 * 21 8 7 41 41 H 1.09008 * 109.49773 * 61.40249 * 21 8 7 42 42 H 1.08996 * 113.61172 * 105.46847 * 22 3 2 43 43 H 1.08996 * 113.61187 * 334.57156 * 22 3 2 44 44 H 1.09004 * 113.61249 * 139.98620 * 23 22 3 45 45 H 1.08999 * 113.61792 * 270.88044 * 23 22 3 46 46 H 1.08996 * 113.61970 * 89.11188 * 24 23 22 47 47 H 1.09004 * 113.61485 * 220.02116 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5395 1.2764 -0.0391 5 1 3.9195 2.2921 -0.1492 6 6 4.0714 0.6711 1.2616 7 7 3.9849 0.4608 -1.1768 8 6 5.3293 0.8588 -1.6154 9 6 5.2212 2.0378 -2.5850 10 6 6.6264 2.4721 -3.0132 11 7 7.3364 1.3065 -3.5573 12 6 7.9091 1.3559 -4.8002 13 1 7.5074 2.0171 -5.5539 14 6 9.0059 0.5565 -5.0914 15 7 9.3081 0.2845 -6.3432 16 14 10.0528 -0.1332 -3.7067 17 1 9.5582 -1.4839 -3.3377 18 1 11.4655 -0.2286 -4.1544 19 1 9.9671 0.7647 -2.5269 20 6 7.4207 0.0869 -2.7423 21 6 6.0065 -0.3206 -2.3171 22 6 1.4392 2.2341 1.0846 23 6 1.4869 3.3581 0.0363 24 6 1.3856 2.2579 -1.0333 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 5.1609 0.6500 1.2336 29 1 3.7409 1.2762 2.1058 30 1 3.6914 -0.3445 1.3718 31 1 3.3257 0.5129 -1.9390 32 1 5.9212 1.1544 -0.7491 33 1 4.6504 1.7355 -3.4631 34 1 4.7178 2.8694 -2.0920 35 1 7.1679 2.8597 -2.1503 36 1 6.5550 3.2459 -3.7776 37 1 10.0748 -0.2739 -6.5466 38 1 8.0270 0.2800 -1.8573 39 1 7.8720 -0.7151 -3.3265 40 1 6.0622 -1.1677 -1.6334 41 1 5.4281 -0.6011 -3.1975 42 1 2.1154 2.3916 1.9248 43 1 0.4287 1.9708 1.3969 44 1 0.6210 4.0196 0.0656 45 1 2.4332 3.8987 0.0184 46 1 0.3604 2.0012 -1.3000 47 1 2.0187 2.4347 -1.9029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595015983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = 6.312474 kcal Electronic energy + Delta-G solvation = -23943.376183 eV Core-core repulsion = 20741.815797 eV Total energy + Delta-G solvation = -3201.560386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71509 -38.21226 -35.85848 -35.11119 -32.50308 -30.91800 -30.30519 -28.52776 -27.29430 -25.96643 -24.88114 -24.17742 -22.85709 -21.89527 -21.11767 -19.58389 -18.67408 -17.34067 -16.78930 -16.11748 -15.47464 -15.27375 -14.88879 -14.48322 -14.27222 -14.10810 -13.94580 -13.61222 -13.12515 -13.03584 -12.90714 -12.43085 -12.29128 -12.19555 -12.03010 -11.85728 -11.69313 -11.52131 -11.41078 -11.07837 -10.88655 -10.76159 -10.72322 -10.50172 -10.19308 -10.10627 -9.97145 -9.61066 -9.48824 -9.39272 -8.58219 -8.08278 -6.92912 -5.91042 -3.26249 3.37089 3.52039 3.55436 3.56041 4.06664 4.23935 4.33994 4.49717 4.57555 4.66502 5.01312 5.01836 5.03889 5.14398 5.29736 5.32040 5.36890 5.37825 5.41741 5.46820 5.55488 5.58342 5.60792 5.69899 5.72449 5.74938 5.84342 5.89571 5.97647 6.11923 6.14035 6.21615 6.32234 6.40099 6.42543 6.56672 6.67671 6.71918 6.78297 6.98926 7.08834 7.38148 7.65152 8.01147 8.36578 8.98853 9.76747 10.15122 11.25139 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.004038 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.257636 B = 6932.480729 C = 7111.969213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.102 3.898 4 C 0.118 3.882 5 H 0.057 0.943 6 C -0.138 4.138 7 N -0.672 5.672 8 C 0.094 3.906 9 C -0.162 4.162 10 C 0.153 3.847 11 N -0.606 5.606 12 C -0.259 4.259 13 H 0.084 0.916 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.884 3.116 17 H -0.288 1.288 18 H -0.304 1.304 19 H -0.271 1.271 20 C 0.126 3.874 21 C -0.117 4.117 22 C -0.171 4.171 23 C -0.137 4.137 24 C -0.178 4.178 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 3.623 15.761 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.271 6.271 3 C 0.061 3.939 4 C 0.008 3.992 5 H 0.075 0.925 6 C -0.196 4.196 7 N -0.303 5.303 8 C -0.015 4.015 9 C -0.202 4.202 10 C 0.026 3.974 11 N -0.330 5.330 12 C -0.388 4.388 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.553 5.553 16 Si 0.714 3.286 17 H -0.215 1.215 18 H -0.232 1.232 19 H -0.196 1.196 20 C 0.000 4.000 21 C -0.157 4.157 22 C -0.209 4.209 23 C -0.175 4.175 24 C -0.216 4.216 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.329 2.864 16.027 23.778 hybrid contribution 0.154 0.688 0.198 0.733 sum -17.175 3.553 16.225 23.893 Atomic orbital electron populations 1.22858 0.82188 1.02509 0.99823 1.87985 1.18551 1.26506 1.94104 1.23136 0.93805 0.81921 0.94995 1.21204 0.88695 0.95783 0.93535 0.92513 1.21764 1.00937 1.01880 0.95031 1.60647 1.03861 1.55726 1.10043 1.21560 0.89101 0.94476 0.96397 1.22712 1.00172 0.97876 0.99487 1.20819 0.89853 0.90072 0.96615 1.44361 1.63578 1.07780 1.17262 1.18919 1.08479 1.24536 0.86827 0.89858 1.25262 0.97571 0.98910 0.95821 1.69841 1.29110 1.39085 1.17267 0.86933 0.79684 0.78648 0.83314 1.21522 1.23250 1.19645 1.21351 0.94258 0.90103 0.94305 1.21966 0.97589 0.96575 0.99574 1.23688 1.02185 0.96772 0.98266 1.22691 1.02512 0.96138 0.96132 1.23739 1.02301 0.97030 0.98502 0.93861 0.89690 0.94100 0.92514 0.93025 0.91331 0.83986 0.91216 0.91814 0.93375 0.96229 0.92083 0.92817 0.95941 0.90907 0.92190 0.91865 0.90509 0.89434 0.91101 0.89791 0.89246 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.18 101.05 1.03 1.22 16 2 O -0.35 -4.21 10.40 -35.23 -0.37 -4.57 16 3 C 0.10 1.07 0.76 -89.80 -0.07 1.00 16 4 C 0.12 1.41 1.95 -67.71 -0.13 1.27 16 5 H 0.06 0.68 6.27 -51.93 -0.33 0.35 16 6 C -0.14 -1.62 9.18 37.16 0.34 -1.28 16 7 N -0.67 -9.47 5.91 -99.69 -0.59 -10.06 16 8 C 0.09 1.51 2.24 -67.67 -0.15 1.35 16 9 C -0.16 -2.64 5.31 -26.61 -0.14 -2.78 16 10 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 11 N -0.61 -14.62 2.77 -172.32 -0.48 -15.10 16 12 C -0.26 -7.37 10.03 -15.06 -0.15 -7.52 16 13 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 14 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 15 N -0.91 -28.31 13.97 55.49 0.78 -27.53 16 16 Si 0.88 22.83 24.35 -169.99 -4.14 18.70 16 17 H -0.29 -7.19 6.62 56.52 0.37 -6.82 16 18 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 19 H -0.27 -6.89 6.63 56.52 0.37 -6.52 16 20 C 0.13 2.82 4.20 -3.71 -0.02 2.80 16 21 C -0.12 -2.19 5.69 -26.61 -0.15 -2.34 16 22 C -0.17 -1.48 6.96 -25.92 -0.18 -1.66 16 23 C -0.14 -1.13 7.73 -25.92 -0.20 -1.33 16 24 C -0.18 -1.68 6.84 -25.92 -0.18 -1.86 16 25 H 0.04 0.34 6.07 -51.93 -0.32 0.02 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.30 6.12 -51.93 -0.32 -0.02 16 28 H 0.06 0.70 7.42 -51.93 -0.39 0.31 16 29 H 0.05 0.51 6.72 -51.93 -0.35 0.16 16 30 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 31 H 0.34 4.84 7.68 -39.29 -0.30 4.54 16 32 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.67 7.41 -51.93 -0.38 0.29 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 39 H 0.07 1.79 4.50 -51.93 -0.23 1.56 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.08 0.65 6.70 -51.93 -0.35 0.30 16 43 H 0.09 0.68 5.97 -51.93 -0.31 0.37 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.71 7.61 -51.93 -0.40 0.31 16 46 H 0.09 0.77 5.86 -51.93 -0.30 0.47 16 47 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -30.89 342.15 -7.85 -38.74 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.09 Total: 2.18 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.11 Total: -7.52 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.29 Total: -52.69 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.37 Total: -4.57 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.89 -7.85 -38.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595015983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.050 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds