Wall clock time and date at job start Tue Mar 31 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99520 * 2 1 4 4 C 1.53006 * 112.84760 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47142 * 176.15056 * 4 3 2 6 6 C 1.52995 * 109.47255 * 56.14943 * 4 3 2 7 7 N 1.46904 * 109.46692 * 296.15003 * 4 3 2 8 8 C 1.46901 * 110.99850 * 256.30501 * 7 4 3 9 9 C 1.53043 * 109.46370 * 273.93062 * 8 7 4 10 10 C 1.53186 * 109.31292 * 178.60057 * 9 8 7 11 11 N 1.46923 * 108.76770 * 54.65603 * 10 9 8 12 12 C 1.36939 * 120.63325 * 126.40343 * 11 10 9 13 13 H 1.08003 * 119.99689 * 330.66998 * 12 11 10 14 14 C 1.38807 * 120.00136 * 150.67130 * 12 11 10 15 15 N 1.31615 * 119.99846 * 159.99590 * 14 12 11 16 16 Si 1.86800 * 120.00080 * 339.99825 * 14 12 11 17 17 H 1.48503 * 109.47251 * 92.07984 * 16 14 12 18 18 H 1.48498 * 109.47431 * 212.07919 * 16 14 12 19 19 H 1.48499 * 109.47024 * 332.08465 * 16 14 12 20 20 C 1.46921 * 118.73871 * 306.38265 * 11 10 9 21 21 C 1.53040 * 109.46054 * 153.87324 * 8 7 4 22 22 C 1.53781 * 113.61495 * 311.19393 * 3 2 1 23 23 C 1.53959 * 87.01781 * 89.23370 * 22 3 2 24 24 C 1.53775 * 113.61723 * 48.80407 * 3 2 1 25 25 H 1.09000 * 109.47575 * 60.00372 * 1 2 3 26 26 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47431 * 299.99875 * 1 2 3 28 28 H 1.09006 * 109.47177 * 295.43574 * 6 4 3 29 29 H 1.09001 * 109.47144 * 55.43841 * 6 4 3 30 30 H 1.08993 * 109.47259 * 175.43768 * 6 4 3 31 31 H 1.00892 * 111.00099 * 20.26342 * 7 4 3 32 32 H 1.09007 * 109.45833 * 33.90473 * 8 7 4 33 33 H 1.08999 * 109.49718 * 298.57102 * 9 8 7 34 34 H 1.09000 * 109.49479 * 58.66082 * 9 8 7 35 35 H 1.09003 * 109.59882 * 294.86599 * 10 9 8 36 36 H 1.09002 * 109.69943 * 174.50831 * 10 9 8 37 37 H 0.97006 * 120.00241 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.58921 * 293.82288 * 20 11 10 39 39 H 1.09002 * 109.70878 * 173.46346 * 20 11 10 40 40 H 1.09001 * 109.49843 * 301.33766 * 21 8 7 41 41 H 1.08996 * 109.49287 * 61.40405 * 21 8 7 42 42 H 1.09001 * 113.61644 * 203.75005 * 22 3 2 43 43 H 1.08997 * 113.61520 * 334.65033 * 22 3 2 44 44 H 1.09000 * 113.53322 * 270.80980 * 23 22 3 45 45 H 1.09001 * 113.73931 * 139.94718 * 23 22 3 46 46 H 1.09003 * 113.61423 * 25.34646 * 24 3 2 47 47 H 1.09002 * 113.61622 * 156.25184 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5398 1.2749 -0.0006 5 1 3.9236 2.2928 -0.0696 6 6 4.0332 0.4616 -1.1989 7 7 4.0176 0.6545 1.2424 8 6 4.5200 1.6696 2.1780 9 6 5.9891 1.9661 1.8681 10 6 6.4995 3.0499 2.8228 11 7 6.2498 2.6181 4.2048 12 6 7.2677 2.5855 5.1203 13 1 8.2817 2.4067 4.7942 14 6 6.9962 2.7820 6.4673 15 7 7.8547 2.3744 7.3779 16 14 5.4125 3.6248 6.9877 17 1 4.3625 2.6020 7.2258 18 1 5.6476 4.3927 8.2368 19 1 4.9681 4.5496 5.9142 20 6 4.8872 2.2226 4.5861 21 6 4.3946 1.1482 3.6114 22 6 1.4128 2.2457 -1.0603 23 6 0.3744 2.6522 0.0013 24 6 1.4128 2.2457 1.0602 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.7174 -0.5759 -1.0887 29 1 3.6125 0.8740 -2.1160 30 1 5.1211 0.5071 -1.2458 31 1 3.2939 0.0960 1.6691 32 1 3.9348 2.5830 2.0713 33 1 6.5788 1.0587 1.9987 34 1 6.0807 2.3150 0.8395 35 1 5.9719 3.9842 2.6309 36 1 7.5692 3.1970 2.6735 37 1 7.6649 2.5114 8.3193 38 1 4.2280 3.0894 4.5380 39 1 4.8907 1.8221 5.5999 40 1 3.3513 0.9151 3.8238 41 1 4.9990 0.2484 3.7253 42 1 2.0807 3.0567 -1.3507 43 1 0.9833 1.7231 -1.9150 44 1 -0.5171 2.0250 0.0006 45 1 0.1426 3.7172 0.0032 46 1 0.9833 1.7232 1.9149 47 1 2.0807 3.0567 1.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595015986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:46 Heat of formation + Delta-G solvation = 9.852627 kcal Electronic energy + Delta-G solvation = -24126.031070 eV Core-core repulsion = 20924.624197 eV Total energy + Delta-G solvation = -3201.406873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95587 -38.17146 -35.67318 -34.92845 -32.66514 -31.10946 -30.26987 -28.51268 -27.68227 -25.92141 -24.67659 -24.18026 -22.79192 -21.60976 -20.79555 -20.18021 -19.17773 -16.87000 -16.57546 -16.43836 -15.51327 -15.31641 -14.74298 -14.65679 -14.13406 -13.87832 -13.74521 -13.66466 -13.25196 -13.00451 -12.82562 -12.49468 -12.44431 -12.29003 -12.13346 -12.08077 -11.72025 -11.38777 -11.23227 -11.02578 -10.89134 -10.76666 -10.68418 -10.37123 -10.33977 -10.10196 -9.86955 -9.68676 -9.57553 -9.38691 -8.57853 -8.10091 -6.90181 -5.91588 -3.28032 3.33470 3.43509 3.49223 3.52720 4.12857 4.21415 4.44978 4.47582 4.56024 4.61593 4.98220 5.02340 5.07337 5.12704 5.29882 5.33674 5.35885 5.38954 5.42646 5.46766 5.53088 5.58420 5.63834 5.68224 5.72983 5.80937 5.83481 5.96248 5.99639 6.06684 6.15528 6.25541 6.31397 6.43673 6.45277 6.49907 6.67646 6.72663 6.83157 6.99049 7.07337 7.41145 7.67396 8.03044 8.38127 8.99402 9.76365 10.15835 11.24766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026169 B = 0.004499 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.730156 B = 6221.625039 C = 6677.366898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.351 6.351 3 C 0.075 3.925 4 C 0.112 3.888 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.677 5.677 8 C 0.095 3.905 9 C -0.119 4.119 10 C 0.147 3.853 11 N -0.605 5.605 12 C -0.258 4.258 13 H 0.085 0.915 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.882 3.118 17 H -0.289 1.289 18 H -0.303 1.303 19 H -0.272 1.272 20 C 0.130 3.870 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.169 4.169 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.345 0.655 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 -1.557 -17.576 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.269 6.269 3 C 0.033 3.967 4 C 0.002 3.998 5 H 0.099 0.901 6 C -0.190 4.190 7 N -0.308 5.308 8 C -0.014 4.014 9 C -0.159 4.159 10 C 0.021 3.979 11 N -0.329 5.329 12 C -0.386 4.386 13 H 0.102 0.898 14 C -0.175 4.175 15 N -0.553 5.553 16 Si 0.713 3.287 17 H -0.217 1.217 18 H -0.232 1.232 19 H -0.197 1.197 20 C 0.004 3.996 21 C -0.174 4.174 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.206 4.206 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.164 0.836 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.085 -1.881 -17.641 23.287 hybrid contribution -2.087 1.141 0.778 2.503 sum -17.172 -0.740 -16.864 24.079 Atomic orbital electron populations 1.23050 0.81870 1.02382 1.00172 1.87939 1.19175 1.25498 1.94283 1.23317 0.94941 0.82986 0.95424 1.21557 0.87605 0.98371 0.92315 0.90073 1.21672 1.01024 1.00848 0.95472 1.60607 1.40785 1.23856 1.05536 1.21551 0.96128 0.92343 0.91372 1.22023 0.95102 1.00687 0.98061 1.20958 0.99072 0.93440 0.84427 1.44336 1.05302 1.75809 1.07403 1.18936 0.89422 1.43272 0.86973 0.89781 1.25314 0.97052 0.99268 0.95838 1.69835 1.37168 1.47733 1.00521 0.86938 0.84094 0.80429 0.77248 1.21655 1.23155 1.19725 1.21276 0.86626 0.94192 0.97519 1.22215 0.99673 1.00954 0.94550 1.23553 0.98903 0.99919 0.97582 1.23333 0.97730 1.02074 0.96578 1.23610 0.99051 1.00220 0.97758 0.93540 0.89890 0.93477 0.91926 0.93330 0.92320 0.83556 0.94590 0.91280 0.93192 0.96487 0.91816 0.92820 0.96192 0.90933 0.93342 0.90848 0.89048 0.90884 0.89130 0.91183 0.90857 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.17 101.05 0.93 1.11 16 2 O -0.35 -3.95 9.80 -35.23 -0.35 -4.29 16 3 C 0.07 0.79 0.77 -89.81 -0.07 0.72 16 4 C 0.11 1.33 2.06 -67.71 -0.14 1.19 16 5 H 0.08 0.98 7.20 -51.93 -0.37 0.61 16 6 C -0.13 -1.49 9.27 37.16 0.34 -1.15 16 7 N -0.68 -9.47 6.08 -99.69 -0.61 -10.07 16 8 C 0.10 1.51 2.11 -67.67 -0.14 1.37 16 9 C -0.12 -2.04 5.59 -26.61 -0.15 -2.19 16 10 C 0.15 2.97 6.52 -3.72 -0.02 2.94 16 11 N -0.60 -14.61 2.74 -172.32 -0.47 -15.08 16 12 C -0.26 -7.32 10.02 -15.06 -0.15 -7.48 16 13 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 14 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 15 N -0.91 -28.25 13.97 55.49 0.78 -27.47 16 16 Si 0.88 22.70 24.37 -169.99 -4.14 18.56 16 17 H -0.29 -7.17 6.62 56.52 0.37 -6.79 16 18 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 19 H -0.27 -6.89 6.72 56.52 0.38 -6.51 16 20 C 0.13 2.88 4.21 -3.71 -0.02 2.86 16 21 C -0.13 -2.43 5.35 -26.61 -0.14 -2.57 16 22 C -0.16 -1.43 6.56 -25.82 -0.17 -1.60 16 23 C -0.16 -1.37 7.30 -25.83 -0.19 -1.55 16 24 C -0.17 -1.77 6.43 -25.92 -0.17 -1.93 16 25 H 0.05 0.34 5.86 -51.93 -0.30 0.03 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.38 5.86 -51.93 -0.30 0.07 16 28 H 0.06 0.76 7.90 -51.93 -0.41 0.35 16 29 H 0.05 0.48 7.86 -51.93 -0.41 0.07 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.35 4.89 7.44 -39.30 -0.29 4.59 16 32 H 0.04 0.57 6.18 -51.93 -0.32 0.25 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.75 7.87 -51.93 -0.41 0.35 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.02 0.44 7.09 -51.93 -0.37 0.07 16 39 H 0.07 1.76 4.69 -51.93 -0.24 1.52 16 40 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 43 H 0.07 0.61 7.48 -51.93 -0.39 0.23 16 44 H 0.09 0.68 4.83 -51.93 -0.25 0.43 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 47 H 0.09 1.05 6.88 -51.93 -0.36 0.69 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -30.52 341.91 -8.03 -38.55 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.21 Total: 2.33 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.18 Total: -7.67 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.30 Total: -52.63 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.35 Total: -4.29 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.52 -8.03 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595015986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.405 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds