Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46945 * 2 1 4 4 C 1.52991 * 109.47150 * 120.00161 * 2 1 3 5 5 C 1.53002 * 109.47263 * 175.00013 * 4 2 1 6 6 H 1.09003 * 109.46920 * 54.99833 * 5 4 2 7 7 C 1.52996 * 109.47708 * 174.99992 * 5 4 2 8 8 N 1.46506 * 109.47332 * 295.00315 * 5 4 2 9 9 C 1.34770 * 120.00054 * 154.99629 * 8 5 4 10 10 O 1.21589 * 120.00394 * 4.98029 * 9 8 5 11 11 N 1.34777 * 119.99821 * 184.97833 * 9 8 5 12 12 C 1.46928 * 120.63089 * 354.77374 * 11 9 8 13 13 C 1.53196 * 108.77627 * 233.63265 * 12 11 9 14 14 C 1.53041 * 109.31006 * 305.36232 * 13 12 11 15 15 C 1.53037 * 109.53756 * 61.36893 * 14 13 12 16 16 H 1.08998 * 109.49998 * 58.61422 * 15 14 13 17 17 C 1.50695 * 109.49752 * 178.68140 * 15 14 13 18 18 H 1.08003 * 120.00337 * 359.97438 * 17 15 14 19 19 C 1.37877 * 119.99881 * 180.27481 * 17 15 14 20 20 N 1.31515 * 120.00304 * 359.72213 * 19 17 15 21 21 Si 1.86804 * 119.99809 * 179.72321 * 19 17 15 22 22 H 1.48500 * 109.46964 * 89.99988 * 21 19 17 23 23 H 1.48508 * 109.46942 * 209.99887 * 21 19 17 24 24 H 1.48496 * 109.47109 * 329.99961 * 21 19 17 25 25 C 1.46923 * 120.63534 * 174.79996 * 11 9 8 26 26 H 1.09000 * 109.47101 * 299.99965 * 1 2 3 27 27 H 1.09001 * 109.47181 * 59.99820 * 1 2 3 28 28 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46876 * 240.00537 * 2 1 3 30 30 H 1.08999 * 109.46895 * 60.00548 * 3 2 1 31 31 H 1.08998 * 109.46454 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47182 * 299.99910 * 3 2 1 33 33 H 1.09002 * 109.47005 * 55.00275 * 4 2 1 34 34 H 1.08998 * 109.47279 * 294.99813 * 4 2 1 35 35 H 1.09003 * 109.47060 * 59.99926 * 7 5 4 36 36 H 1.08996 * 109.47419 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.46910 * 300.00639 * 7 5 4 38 38 H 0.97002 * 119.99217 * 335.00031 * 8 5 4 39 39 H 1.08997 * 109.58961 * 113.84419 * 12 11 9 40 40 H 1.09004 * 109.70299 * 353.49199 * 12 11 9 41 41 H 1.09008 * 109.49680 * 185.41279 * 13 12 11 42 42 H 1.08999 * 109.49881 * 65.31744 * 13 12 11 43 43 H 1.08999 * 109.46131 * 301.34182 * 14 13 12 44 44 H 1.09005 * 109.45667 * 181.38547 * 14 13 12 45 45 H 0.96996 * 119.99813 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58414 * 6.57792 * 25 11 9 47 47 H 1.09001 * 109.58881 * 246.15937 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1612 1.0526 7 6 4.0852 -1.4394 2.4917 8 7 3.9480 -1.6871 0.0624 9 6 5.1612 -1.5477 -0.5077 10 8 5.9714 -0.7757 -0.0323 11 7 5.4764 -2.2641 -1.6050 12 6 4.5540 -3.2831 -2.1242 13 6 5.3092 -4.6091 -2.2591 14 6 6.5577 -4.3953 -3.1180 15 6 7.4799 -3.3814 -2.4371 16 1 7.7542 -3.7464 -1.4474 17 6 8.7237 -3.1959 -3.2675 18 1 8.8451 -3.7463 -4.1888 19 6 9.7095 -2.3281 -2.8479 20 7 9.5620 -1.6581 -1.7259 21 14 11.2548 -2.1040 -3.8733 22 1 11.0467 -1.0031 -4.8481 23 1 12.3951 -1.7680 -2.9832 24 1 11.5510 -3.3625 -4.6038 25 6 6.7492 -2.0415 -2.3043 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6054 -1.7198 1.2950 34 1 1.7517 -0.1583 2.1369 35 1 3.6547 -2.4316 2.6269 36 1 5.1715 -1.5180 2.4478 37 1 3.8001 -0.8025 3.3290 38 1 3.3284 -2.3542 -0.2723 39 1 4.1805 -2.9743 -3.1006 40 1 3.7180 -3.4070 -1.4358 41 1 4.6638 -5.3488 -2.7330 42 1 5.6035 -4.9623 -1.2708 43 1 6.2643 -4.0187 -4.0979 44 1 7.0838 -5.3427 -3.2360 45 1 10.2558 -1.0479 -1.4306 46 1 7.3633 -1.3456 -1.7327 47 1 6.5549 -1.6314 -3.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595567780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -55.072888 kcal Electronic energy + Delta-G solvation = -23711.043962 eV Core-core repulsion = 20506.821707 eV Total energy + Delta-G solvation = -3204.222255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82005 -37.72717 -36.39800 -34.08309 -33.28783 -31.80062 -30.37206 -29.47486 -27.28968 -26.65633 -25.02391 -24.39693 -21.83437 -21.47546 -20.21387 -19.73728 -18.79838 -17.44028 -16.15300 -15.96457 -15.12857 -14.80564 -14.60915 -14.32286 -14.14556 -13.66530 -13.59137 -13.24413 -12.89171 -12.68079 -12.48793 -12.47209 -12.34947 -12.16770 -11.91862 -11.86296 -11.68107 -11.36574 -10.96273 -10.85236 -10.75668 -10.68079 -10.48249 -10.39503 -10.31249 -10.18655 -9.82488 -9.33308 -9.04317 -8.88638 -8.63325 -8.37522 -7.56478 -5.93380 -4.02723 3.31046 3.36310 3.41483 3.43816 3.94317 4.43111 4.50886 4.62367 4.78459 4.81708 5.26624 5.29047 5.34684 5.36498 5.43033 5.51227 5.54854 5.60985 5.63410 5.66187 5.76022 5.80985 5.85813 5.86550 6.01437 6.05348 6.11900 6.20310 6.27397 6.34357 6.35900 6.46084 6.63751 6.72612 6.86187 6.99603 7.04778 7.11291 7.42066 7.58754 7.81095 7.99145 8.12440 8.46363 8.69205 9.01012 9.36758 9.62643 11.11432 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022723 B = 0.004268 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.934014 B = 6558.298737 C = 6982.044842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.121 4.121 5 C 0.159 3.841 6 H 0.088 0.912 7 C -0.164 4.164 8 N -0.751 5.751 9 C 0.700 3.300 10 O -0.582 6.582 11 N -0.624 5.624 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.388 0.612 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.123 0.877 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.274 0.184 4.209 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.106 0.894 7 C -0.223 4.223 8 N -0.410 5.410 9 C 0.402 3.598 10 O -0.460 6.460 11 N -0.361 5.361 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.557 0.928 4.665 18.189 hybrid contribution 0.505 -0.299 -0.705 0.917 sum -17.052 0.629 3.959 17.517 Atomic orbital electron populations 1.21843 0.95485 1.01440 1.01566 1.21105 0.95164 0.96722 0.98610 1.21891 1.01875 0.95659 1.01302 1.21962 0.94640 1.00827 0.98456 1.20767 0.93399 0.95075 0.85440 0.89444 1.22207 1.02792 1.00451 0.96834 1.45444 1.16900 1.41699 1.36931 1.15974 0.81895 0.81572 0.80402 1.90920 1.48795 1.41662 1.64585 1.47772 1.21987 1.38145 1.28149 1.21457 0.91693 0.89304 0.98319 1.21947 0.98389 0.95760 1.01074 1.21609 0.94818 1.00299 0.97969 1.18978 0.92252 0.90333 0.96427 0.95362 1.21075 1.01895 1.25268 1.07818 0.92457 1.25056 0.98269 0.95733 0.94951 1.69909 1.34016 1.26747 1.20827 0.86618 0.83013 0.78380 0.80120 1.20670 1.21243 1.19983 1.22146 0.80254 1.02163 0.94556 0.92865 0.92859 0.92887 0.90932 0.92901 0.91960 0.92983 0.91688 0.90655 0.93031 0.91544 0.92336 0.77667 0.92341 0.92226 0.92437 0.92243 0.93257 0.93153 0.92710 0.85953 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.94 2.86 -90.62 -0.26 -1.20 16 3 C -0.15 -1.56 8.95 37.16 0.33 -1.23 16 4 C -0.12 -1.15 4.22 -26.73 -0.11 -1.27 16 5 C 0.16 2.09 2.40 -67.93 -0.16 1.93 16 6 H 0.09 1.35 5.86 -51.93 -0.30 1.04 16 7 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 8 N -0.75 -11.25 4.36 -58.67 -0.26 -11.51 16 9 C 0.70 14.41 8.26 -86.92 -0.72 13.69 16 10 O -0.58 -14.75 15.43 5.29 0.08 -14.67 16 11 N -0.62 -12.75 2.97 -178.50 -0.53 -13.28 16 12 C 0.12 1.83 6.38 -3.71 -0.02 1.80 16 13 C -0.13 -2.17 6.08 -26.61 -0.16 -2.34 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 15 C 0.04 0.99 2.25 -91.66 -0.21 0.78 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.34 8.56 -34.44 -0.29 -14.63 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.77 5.31 -17.82 -0.09 1.67 16 20 N -0.88 -26.06 11.41 55.43 0.63 -25.43 16 21 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.13 3.21 5.41 -3.71 -0.02 3.19 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.78 6.46 -51.93 -0.34 0.45 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.39 4.82 6.09 -40.82 -0.25 4.57 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.12 3.56 5.13 -51.93 -0.27 3.29 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -31.67 360.74 -9.39 -41.06 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.57 Total: 4.44 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.16 Total: -2.54 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.15 Total: -50.22 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.08 Total: -14.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.67 -9.39 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.012 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds