Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46954 * 2 1 4 4 C 1.53001 * 109.46916 * 119.99591 * 2 1 3 5 5 C 1.53011 * 109.47115 * 66.00607 * 4 2 1 6 6 H 1.09001 * 109.46708 * 303.05607 * 5 4 2 7 7 C 1.52995 * 109.47210 * 183.05667 * 5 4 2 8 8 N 1.46501 * 109.47075 * 63.05677 * 5 4 2 9 9 C 1.34773 * 120.00048 * 205.00090 * 8 5 4 10 10 O 1.21588 * 119.99900 * 5.05337 * 9 8 5 11 11 N 1.34777 * 120.00199 * 185.04558 * 9 8 5 12 12 C 1.46926 * 120.62656 * 354.95539 * 11 9 8 13 13 C 1.53192 * 108.77355 * 126.41020 * 12 11 9 14 14 C 1.53043 * 109.31589 * 54.63430 * 13 12 11 15 15 C 1.53037 * 109.53527 * 298.63369 * 14 13 12 16 16 H 1.09000 * 109.49627 * 301.41386 * 15 14 13 17 17 C 1.50696 * 109.52370 * 181.33129 * 15 14 13 18 18 H 1.07994 * 120.00045 * 0.07940 * 17 15 14 19 19 C 1.37881 * 120.00026 * 180.08159 * 17 15 14 20 20 N 1.31519 * 119.99774 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00088 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47160 * 59.99827 * 21 19 17 23 23 H 1.48502 * 109.47037 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46956 * 299.99739 * 21 19 17 25 25 C 1.46919 * 120.63195 * 174.97290 * 11 9 8 26 26 H 1.09000 * 109.46994 * 300.00048 * 1 2 3 27 27 H 1.08991 * 109.46764 * 60.00386 * 1 2 3 28 28 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47197 * 239.99600 * 2 1 3 30 30 H 1.09001 * 109.46906 * 184.93641 * 3 2 1 31 31 H 1.09003 * 109.47232 * 304.93444 * 3 2 1 32 32 H 1.09004 * 109.47357 * 64.93929 * 3 2 1 33 33 H 1.08997 * 109.47257 * 306.00859 * 4 2 1 34 34 H 1.08994 * 109.47070 * 186.00257 * 4 2 1 35 35 H 1.09003 * 109.46990 * 60.00116 * 7 5 4 36 36 H 1.09000 * 109.47055 * 180.02562 * 7 5 4 37 37 H 1.08996 * 109.47151 * 300.00068 * 7 5 4 38 38 H 0.97002 * 120.00032 * 24.99798 * 8 5 4 39 39 H 1.09000 * 109.58449 * 246.19149 * 12 11 9 40 40 H 1.08994 * 109.59241 * 6.47706 * 12 11 9 41 41 H 1.09011 * 109.49608 * 174.58311 * 13 12 11 42 42 H 1.08998 * 109.49996 * 294.67926 * 13 12 11 43 43 H 1.09001 * 109.46184 * 178.61140 * 14 13 12 44 44 H 1.08996 * 109.45712 * 58.65110 * 14 13 12 45 45 H 0.96999 * 119.99911 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58782 * 113.80827 * 25 11 9 47 47 H 1.08995 * 109.70363 * 353.44748 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6569 -2.2008 1.1762 6 1 0.5763 -2.2912 1.0662 7 6 2.0997 -2.9062 2.4596 8 7 2.3186 -2.8202 0.0253 9 6 1.7863 -3.9177 -0.5478 10 8 0.7106 -4.3400 -0.1696 11 7 2.4461 -4.5471 -1.5403 12 6 3.6915 -3.9879 -2.0834 13 6 4.7816 -5.0626 -2.0242 14 6 4.2912 -6.3211 -2.7440 15 6 3.0434 -6.8596 -2.0405 16 1 3.2795 -7.0810 -0.9997 17 6 2.5798 -8.1170 -2.7297 18 1 3.1216 -8.4959 -3.5836 19 6 1.4640 -8.7838 -2.2700 20 7 0.8045 -8.3227 -1.2297 21 14 0.8898 -10.3429 -3.1238 22 1 1.9667 -11.3638 -3.0667 23 1 -0.3226 -10.8629 -2.4419 24 1 0.5685 -10.0410 -4.5418 25 6 1.9335 -5.8052 -2.0999 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1264 1.4438 -0.0884 31 1 1.6063 1.9812 -0.8425 32 1 1.7507 1.9302 0.9309 33 1 1.5915 -0.2732 2.1360 34 1 3.1247 -0.6291 1.3047 35 1 1.6074 -2.4453 3.3159 36 1 1.8272 -3.9603 2.4073 37 1 3.1803 -2.8157 2.5697 38 1 3.1399 -2.4404 -0.3244 39 1 3.5345 -3.6833 -3.1181 40 1 3.9938 -3.1248 -1.4903 41 1 5.6838 -4.6929 -2.5117 42 1 5.0014 -5.3010 -0.9836 43 1 5.0745 -7.0789 -2.7248 44 1 4.0481 -6.0765 -3.7780 45 1 0.0197 -8.7920 -0.9061 46 1 1.6333 -5.6487 -3.1359 47 1 1.0763 -6.1438 -1.5181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595567781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -55.023411 kcal Electronic energy + Delta-G solvation = -23720.970985 eV Core-core repulsion = 20516.750876 eV Total energy + Delta-G solvation = -3204.220109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82592 -37.72227 -36.40019 -34.08853 -33.29099 -31.79445 -30.38844 -29.47601 -27.28022 -26.65328 -25.03045 -24.40308 -21.82967 -21.47710 -20.23110 -19.71526 -18.78418 -17.46129 -16.15038 -15.96183 -15.14754 -14.79287 -14.61870 -14.35048 -14.09928 -13.68268 -13.59731 -13.30134 -12.84237 -12.65582 -12.50467 -12.47320 -12.35841 -12.12896 -11.96072 -11.85972 -11.67580 -11.35263 -10.95037 -10.86911 -10.74303 -10.68448 -10.49470 -10.40383 -10.30031 -10.18663 -9.83679 -9.34771 -9.05652 -8.91358 -8.61709 -8.37558 -7.57218 -5.94527 -4.03577 3.30770 3.36987 3.40962 3.42320 3.95540 4.42311 4.50292 4.63062 4.78723 4.82289 5.26941 5.29497 5.34677 5.36267 5.43554 5.51636 5.54404 5.61546 5.63801 5.65736 5.76420 5.81702 5.86069 5.87436 6.01800 6.05591 6.13033 6.20023 6.27824 6.34647 6.36029 6.45537 6.63353 6.71543 6.86019 6.99766 7.04101 7.13011 7.40795 7.57964 7.80186 7.98368 8.11750 8.45531 8.68965 8.99809 9.36237 9.61737 11.10491 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.004253 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.619986 B = 6581.457224 C = 7049.531700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.157 3.843 6 H 0.089 0.911 7 C -0.164 4.164 8 N -0.750 5.750 9 C 0.702 3.298 10 O -0.585 6.585 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.130 3.870 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.037 0.963 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 17.509 3.264 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.159 4.159 5 C 0.052 3.948 6 H 0.107 0.893 7 C -0.223 4.223 8 N -0.409 5.409 9 C 0.403 3.597 10 O -0.463 6.463 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.259 17.129 3.667 18.027 hybrid contribution 0.203 -0.670 -0.623 0.937 sum 4.462 16.459 3.044 17.323 Atomic orbital electron populations 1.21888 0.95142 1.02433 1.01248 1.21105 0.96222 0.95650 0.98605 1.21848 1.00696 0.96238 1.01568 1.21960 1.01142 0.94347 0.98420 1.20768 0.98670 0.90519 0.84868 0.89262 1.22209 1.00983 1.02088 0.96996 1.45424 1.29575 1.31066 1.34878 1.15954 0.83889 0.79969 0.79872 1.90904 1.21330 1.67597 1.66431 1.47773 1.24495 1.26479 1.37288 1.21468 0.85690 0.95410 0.98234 1.21945 0.96710 0.97193 1.01297 1.21608 0.99583 0.94752 0.98765 1.18980 0.89781 0.92779 0.96399 0.95423 1.21040 1.11835 1.08262 1.14964 0.92484 1.25051 0.96585 0.97479 0.94866 1.69888 1.18765 1.39331 1.23638 0.86664 0.78097 0.83561 0.79703 1.20335 1.21275 1.20267 1.22143 1.01246 0.78899 0.96798 0.92931 0.93028 0.91893 0.90970 0.92907 0.92853 0.92858 0.90660 0.91697 0.92251 0.91714 0.92951 0.77632 0.92306 0.92211 0.92448 0.92228 0.93142 0.93245 0.92634 0.94467 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.97 37.16 0.33 -1.24 16 2 C -0.10 -0.95 2.85 -90.62 -0.26 -1.21 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.12 -1.16 4.23 -26.72 -0.11 -1.28 16 5 C 0.16 2.09 2.48 -67.93 -0.17 1.92 16 6 H 0.09 1.39 5.83 -51.93 -0.30 1.09 16 7 C -0.16 -2.15 9.48 37.15 0.35 -1.80 16 8 N -0.75 -11.32 4.27 -58.67 -0.25 -11.57 16 9 C 0.70 14.47 8.26 -86.92 -0.72 13.75 16 10 O -0.59 -14.78 15.41 5.29 0.08 -14.70 16 11 N -0.62 -12.77 2.97 -178.50 -0.53 -13.30 16 12 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 13 C -0.13 -2.15 6.08 -26.61 -0.16 -2.32 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.52 -14.33 8.56 -34.44 -0.29 -14.62 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -26.01 11.39 55.43 0.63 -25.38 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.13 3.22 5.39 -3.71 -0.02 3.20 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.80 6.53 -51.93 -0.34 0.46 16 29 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.39 4.85 6.02 -40.82 -0.25 4.61 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.12 3.56 5.16 -51.93 -0.27 3.29 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -31.54 360.55 -9.39 -40.92 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.56 Total: 4.59 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.17 Total: -2.47 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.15 Total: -50.25 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.54 -9.39 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.101 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds