Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47567 * 2 1 4 4 C 1.52999 * 109.47152 * 120.00064 * 2 1 3 5 5 C 1.53006 * 109.47141 * 65.84946 * 4 2 1 6 6 H 1.08997 * 109.46939 * 304.26564 * 5 4 2 7 7 C 1.53005 * 109.47009 * 184.26788 * 5 4 2 8 8 N 1.46493 * 109.47321 * 64.26619 * 5 4 2 9 9 C 1.34777 * 120.00342 * 204.99869 * 8 5 4 10 10 O 1.21589 * 119.99851 * 354.96246 * 9 8 5 11 11 N 1.34778 * 120.00076 * 174.95545 * 9 8 5 12 12 C 1.46924 * 120.63109 * 5.03288 * 11 9 8 13 13 C 1.53195 * 108.77393 * 233.58004 * 12 11 9 14 14 C 1.53036 * 109.31276 * 305.36568 * 13 12 11 15 15 C 1.53039 * 109.53935 * 61.36390 * 14 13 12 16 16 H 1.09002 * 109.50160 * 58.58701 * 15 14 13 17 17 C 1.50709 * 109.49929 * 178.68283 * 15 14 13 18 18 H 1.07997 * 119.99497 * 0.02562 * 17 15 14 19 19 C 1.37873 * 119.99708 * 180.02562 * 17 15 14 20 20 N 1.31515 * 120.00569 * 359.97438 * 19 17 15 21 21 Si 1.86806 * 119.99555 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47343 * 90.00045 * 21 19 17 23 23 H 1.48504 * 109.46803 * 209.99852 * 21 19 17 24 24 H 1.48493 * 109.46938 * 329.99617 * 21 19 17 25 25 C 1.46932 * 120.62758 * 184.74669 * 11 9 8 26 26 H 1.09005 * 109.46948 * 60.00390 * 1 2 3 27 27 H 1.09006 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47320 * 300.00288 * 1 2 3 29 29 H 1.09007 * 109.47395 * 239.99938 * 2 1 3 30 30 H 1.09000 * 109.46973 * 55.02428 * 3 2 1 31 31 H 1.09000 * 109.47729 * 175.03238 * 3 2 1 32 32 H 1.09003 * 109.46923 * 295.02947 * 3 2 1 33 33 H 1.08998 * 109.47469 * 185.84594 * 4 2 1 34 34 H 1.08998 * 109.47244 * 305.84735 * 4 2 1 35 35 H 1.08999 * 109.47159 * 59.99502 * 7 5 4 36 36 H 1.08998 * 109.46792 * 179.97438 * 7 5 4 37 37 H 1.08997 * 109.47087 * 299.99686 * 7 5 4 38 38 H 0.97007 * 119.99807 * 24.99771 * 8 5 4 39 39 H 1.08997 * 109.58378 * 353.36595 * 12 11 9 40 40 H 1.08997 * 109.58349 * 113.65322 * 12 11 9 41 41 H 1.09004 * 109.49540 * 65.31692 * 13 12 11 42 42 H 1.08994 * 109.49840 * 185.41282 * 13 12 11 43 43 H 1.08998 * 109.46442 * 181.38432 * 14 13 12 44 44 H 1.08998 * 109.46226 * 301.35836 * 14 13 12 45 45 H 0.96996 * 120.00059 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58417 * 246.20721 * 25 11 9 47 47 H 1.08998 * 109.58690 * 6.63155 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6535 -2.2000 1.1779 6 1 0.5749 -2.2877 1.0478 7 6 2.0694 -2.8989 2.4739 8 7 2.3349 -2.8286 0.0436 9 6 1.8100 -3.9281 -0.5328 10 8 0.8218 -4.4517 -0.0557 11 7 2.3805 -4.4470 -1.6382 12 6 3.6359 -3.8930 -2.1631 13 6 3.4391 -3.5392 -3.6405 14 6 2.9327 -4.7718 -4.3931 15 6 1.5831 -5.2051 -3.8162 16 1 0.8705 -4.3847 -3.9017 17 6 1.0700 -6.3993 -4.5789 18 1 1.6487 -6.8089 -5.3936 19 6 -0.1380 -6.9688 -4.2367 20 7 -0.8424 -6.4703 -3.2442 21 14 -0.7736 -8.4495 -5.1817 22 1 -0.2862 -9.6950 -4.5366 23 1 -2.2586 -8.4388 -5.1782 24 1 -0.2815 -8.3917 -6.5815 25 6 1.7618 -5.5815 -2.3375 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.6058 1.9813 0.8421 31 1 3.1264 1.4437 0.0890 32 1 1.7512 1.9299 -0.9312 33 1 3.1249 -0.6315 1.3032 34 1 1.5937 -0.2715 2.1361 35 1 1.5624 -2.4311 3.3178 36 1 1.7937 -3.9522 2.4232 37 1 3.1480 -2.8112 2.6040 38 1 3.1640 -2.4536 -0.2926 39 1 3.9009 -2.9953 -1.6045 40 1 4.4307 -4.6324 -2.0650 41 1 2.7091 -2.7344 -3.7277 42 1 4.3889 -3.2172 -4.0672 43 1 2.8152 -4.5296 -5.4493 44 1 3.6514 -5.5841 -4.2846 45 1 -1.6921 -6.8713 -3.0032 46 1 2.4064 -6.4566 -2.2557 47 1 0.7900 -5.7981 -1.8941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595567782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = -55.093778 kcal Electronic energy + Delta-G solvation = -23837.718991 eV Core-core repulsion = 20633.495831 eV Total energy + Delta-G solvation = -3204.223161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82110 -37.69635 -36.39090 -34.06482 -33.28641 -31.79704 -30.38462 -29.46830 -27.22009 -26.64117 -25.03173 -24.39353 -21.83750 -21.46415 -20.18759 -19.72911 -18.78681 -17.44588 -16.18165 -15.93474 -15.07980 -14.85124 -14.56841 -14.28045 -14.08555 -13.67427 -13.56535 -13.42074 -12.76802 -12.74904 -12.51423 -12.37949 -12.30391 -12.08597 -11.99824 -11.79703 -11.66373 -11.35422 -10.96810 -10.86178 -10.70809 -10.63265 -10.48502 -10.39429 -10.29042 -10.19187 -9.83057 -9.34905 -9.06045 -8.89989 -8.62336 -8.38561 -7.56770 -5.94709 -4.03585 3.30712 3.36151 3.41187 3.43435 3.95142 4.42489 4.50473 4.65629 4.83379 4.86577 5.29418 5.30563 5.35115 5.37564 5.45210 5.54386 5.55749 5.63637 5.65636 5.67063 5.80732 5.82808 5.86148 5.91655 6.01638 6.10637 6.14523 6.20213 6.33495 6.35029 6.38768 6.43824 6.63096 6.71358 6.85971 6.99562 7.03898 7.13101 7.40048 7.57790 7.80332 7.98006 8.11219 8.45321 8.68980 8.99992 9.36253 9.61837 11.10427 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.004526 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.413608 B = 6185.445676 C = 6461.614422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.120 4.120 5 C 0.158 3.842 6 H 0.088 0.912 7 C -0.163 4.163 8 N -0.750 5.750 9 C 0.701 3.299 10 O -0.585 6.585 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.037 0.963 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 13.357 7.802 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.158 4.158 5 C 0.052 3.948 6 H 0.106 0.894 7 C -0.221 4.221 8 N -0.409 5.409 9 C 0.403 3.597 10 O -0.462 6.462 11 N -0.361 5.361 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.032 12.930 8.244 17.310 hybrid contribution 0.133 -0.607 -0.681 0.922 sum 8.165 12.322 7.562 16.604 Atomic orbital electron populations 1.21884 0.95058 1.02475 1.01287 1.21106 0.96296 0.95660 0.98566 1.21844 1.00619 0.96261 1.01585 1.21963 1.01023 0.94311 0.98545 1.20770 0.98361 0.90469 0.85155 0.89376 1.22200 1.00863 1.02084 0.97001 1.45428 1.28618 1.30718 1.36172 1.15961 0.82938 0.80328 0.80494 1.90906 1.27721 1.62494 1.65100 1.47781 1.24831 1.36540 1.26906 1.21469 0.87180 0.97195 0.94956 1.21940 1.00316 0.99861 0.94986 1.21610 0.99560 0.95093 0.98467 1.19056 0.91032 0.96778 0.91020 0.95377 1.21082 1.04463 1.13944 1.16545 0.92443 1.25048 0.96698 0.97136 0.95088 1.69900 1.13799 1.40391 1.27532 0.86612 0.78022 0.83196 0.80283 1.20660 1.21240 1.19972 1.22238 0.99349 0.83406 0.94077 0.92893 0.91910 0.92983 0.90848 0.92908 0.92926 0.92820 0.91753 0.90683 0.92308 0.91742 0.93069 0.77640 0.92230 0.92308 0.92221 0.92461 0.93143 0.93251 0.92700 0.94450 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.97 37.15 0.33 -1.39 16 2 C -0.10 -1.03 2.86 -90.63 -0.26 -1.28 16 3 C -0.15 -1.25 9.19 37.15 0.34 -0.91 16 4 C -0.12 -1.19 4.22 -26.73 -0.11 -1.30 16 5 C 0.16 2.10 2.41 -67.93 -0.16 1.94 16 6 H 0.09 1.41 5.92 -51.93 -0.31 1.10 16 7 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 8 N -0.75 -11.32 4.32 -58.68 -0.25 -11.57 16 9 C 0.70 14.45 8.26 -86.92 -0.72 13.74 16 10 O -0.58 -14.76 15.45 5.29 0.08 -14.68 16 11 N -0.62 -12.75 2.97 -178.23 -0.53 -13.28 16 12 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 13 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 14 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 15 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.28 8.56 -34.44 -0.29 -14.58 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.99 11.41 55.43 0.63 -25.36 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 3.22 5.41 -3.48 -0.02 3.20 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.87 6.51 -51.93 -0.34 0.54 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.88 7.57 -51.92 -0.39 0.49 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 4.85 6.06 -40.82 -0.25 4.60 16 39 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.12 3.53 5.18 -51.93 -0.27 3.26 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -31.50 360.76 -9.38 -40.89 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.57 Total: 4.74 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.16 Total: -2.63 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.15 Total: -50.21 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.50 -9.38 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595567782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.206 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds