Wall clock time and date at job start Tue Mar 31 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 N 1.46502 * 109.47183 * 119.99512 * 2 1 3 5 5 C 1.46494 * 120.00263 * 300.00368 * 4 2 1 6 6 C 1.34779 * 119.99943 * 119.99867 * 4 2 1 7 7 O 1.21281 * 119.99921 * 0.02562 * 6 4 2 8 8 C 1.50696 * 120.00078 * 180.02562 * 6 4 2 9 9 H 1.09000 * 109.47334 * 35.35178 * 8 6 4 10 10 C 1.52997 * 109.47369 * 275.34640 * 8 6 4 11 11 N 1.46908 * 109.46964 * 155.34824 * 8 6 4 12 12 C 1.46843 * 110.99611 * 172.32843 * 11 8 6 13 13 C 1.53041 * 109.52289 * 185.84101 * 12 11 8 14 14 C 1.53126 * 109.27601 * 300.81924 * 13 12 11 15 15 C 1.53116 * 109.16105 * 57.64939 * 14 13 12 16 16 H 1.09003 * 109.53142 * 62.30803 * 15 14 13 17 17 C 1.50697 * 109.50320 * 182.40456 * 15 14 13 18 18 H 1.08001 * 120.00056 * 119.80716 * 17 15 14 19 19 C 1.37877 * 120.00305 * 299.80891 * 17 15 14 20 20 N 1.31516 * 119.99866 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 120.00113 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.46859 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46749 * 119.99929 * 21 19 17 24 24 H 1.48501 * 109.46779 * 239.99668 * 21 19 17 25 25 C 1.46846 * 110.99818 * 296.53086 * 11 8 6 26 26 H 1.09000 * 109.46881 * 60.00039 * 1 2 3 27 27 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46882 * 300.00384 * 1 2 3 29 29 H 1.09000 * 109.47367 * 239.99752 * 2 1 3 30 30 H 1.08991 * 109.47344 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46688 * 299.99952 * 3 2 1 32 32 H 1.09000 * 109.47151 * 59.99619 * 3 2 1 33 33 H 1.09001 * 109.47509 * 270.00009 * 5 4 2 34 34 H 1.09001 * 109.47112 * 149.99526 * 5 4 2 35 35 H 1.09004 * 109.47076 * 29.99362 * 5 4 2 36 36 H 1.08997 * 109.47625 * 179.97438 * 10 8 6 37 37 H 1.09000 * 109.47332 * 300.00540 * 10 8 6 38 38 H 1.08999 * 109.46982 * 59.99835 * 10 8 6 39 39 H 1.09002 * 109.45960 * 305.84758 * 12 11 8 40 40 H 1.08993 * 109.46966 * 65.82501 * 12 11 8 41 41 H 1.08997 * 109.50835 * 180.87458 * 13 12 11 42 42 H 1.09000 * 109.50096 * 60.75587 * 13 12 11 43 43 H 1.09003 * 109.51873 * 297.74843 * 14 13 12 44 44 H 1.08999 * 109.52355 * 177.55854 * 14 13 12 45 45 H 0.96999 * 120.00037 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46822 * 294.17969 * 25 11 8 47 47 H 1.09000 * 109.46220 * 54.14929 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6645 -0.1900 2.5268 6 6 2.7932 -1.7864 1.0726 7 8 3.0866 -2.2005 -0.0289 8 6 3.2951 -2.4970 2.3031 9 1 2.5354 -2.4529 3.0835 10 6 4.5743 -1.8188 2.7977 11 7 3.5801 -3.9006 1.9760 12 6 4.2407 -4.5788 3.0984 13 6 4.6522 -5.9900 2.6726 14 6 3.4077 -6.7709 2.2412 15 6 2.7114 -6.0184 1.1038 16 1 3.3792 -5.9580 0.2444 17 6 1.4531 -6.7497 0.7129 18 1 0.4953 -6.2570 0.7925 19 6 1.5245 -8.0478 0.2537 20 7 2.6909 -8.6476 0.1564 21 14 -0.0354 -8.9545 -0.2301 22 1 -1.2074 -8.0653 -0.0287 23 1 0.0458 -9.3514 -1.6588 24 1 -0.1843 -10.1678 0.6130 25 6 2.3563 -4.6064 1.5752 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 2.4157 0.5275 2.8568 34 1 1.6238 -1.0225 3.2292 35 1 0.6905 0.2975 2.4843 36 1 4.9371 -2.3325 3.6880 37 1 5.3340 -1.8629 2.0173 38 1 4.3629 -0.7774 3.0404 39 1 5.1264 -4.0155 3.3925 40 1 3.5528 -4.6400 3.9416 41 1 5.1286 -6.4987 3.5107 42 1 5.3510 -5.9291 1.8383 43 1 2.7259 -6.8654 3.0864 44 1 3.7012 -7.7622 1.8961 45 1 2.7412 -9.5607 -0.1670 46 1 1.6771 -4.6674 2.4255 47 1 1.8732 -4.0632 0.7630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:50 Heat of formation + Delta-G solvation = -33.917285 kcal Electronic energy + Delta-G solvation = -24018.149876 eV Core-core repulsion = 20814.844997 eV Total energy + Delta-G solvation = -3203.304879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19414 -38.02511 -36.17694 -34.32146 -32.64464 -31.67887 -30.13067 -28.98060 -27.33346 -26.93918 -25.26194 -24.23945 -22.69106 -21.28082 -20.31844 -18.74865 -18.58806 -17.20136 -16.48244 -15.89218 -15.45498 -15.07703 -14.57183 -14.24734 -13.96289 -13.72579 -13.48748 -13.15731 -12.82935 -12.76199 -12.61067 -12.52473 -12.42084 -12.24968 -12.15597 -11.81811 -11.74128 -11.43829 -11.37793 -11.20468 -10.90534 -10.89729 -10.61286 -10.56494 -10.02091 -9.76357 -9.38422 -9.31367 -8.96271 -8.61051 -8.56819 -8.22350 -7.58987 -5.89608 -3.94906 2.91101 3.01230 3.34661 3.42277 3.46196 4.37163 4.53666 4.61881 4.90785 4.93246 4.96697 5.16647 5.16948 5.22720 5.39022 5.40594 5.43198 5.50491 5.58255 5.60285 5.65836 5.74643 5.82368 5.84221 5.87230 6.08650 6.11151 6.13996 6.17660 6.34025 6.43409 6.57942 6.66132 6.76294 6.81433 7.05782 7.29066 7.38913 7.51157 7.69768 7.82238 7.86740 8.20330 8.26525 8.50443 8.56968 9.08990 9.68519 11.16711 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.005144 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.957783 B = 5441.988709 C = 6604.503248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.620 5.620 5 C 0.076 3.924 6 C 0.520 3.480 7 O -0.506 6.506 8 C 0.065 3.935 9 H 0.053 0.947 10 C -0.141 4.141 11 N -0.517 5.517 12 C 0.061 3.939 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.057 3.943 16 H 0.036 0.964 17 C -0.510 4.510 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.070 3.930 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.258 0.742 46 H 0.014 0.986 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 18.705 6.929 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.356 5.356 5 C -0.067 4.067 6 C 0.307 3.693 7 O -0.379 6.379 8 C -0.047 4.047 9 H 0.071 0.929 10 C -0.199 4.199 11 N -0.242 5.242 12 C -0.067 4.067 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.054 0.946 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.057 4.057 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.402 18.288 5.864 19.209 hybrid contribution -1.555 -0.437 0.567 1.712 sum -1.153 17.851 6.431 19.009 Atomic orbital electron populations 1.22145 0.95142 1.02721 1.01946 1.21010 0.93940 0.92861 0.89555 1.22118 1.01627 0.95827 1.02006 1.47976 1.51988 1.29047 1.06631 1.21787 1.00726 1.00009 0.84189 1.20625 0.77623 0.79572 0.91438 1.90721 1.55730 1.63928 1.27495 1.21588 0.97638 0.91843 0.93643 0.92923 1.21823 0.96670 0.99321 1.02049 1.61809 1.27673 0.98481 1.36270 1.22145 0.97358 0.96127 0.91022 1.21675 1.00232 0.93658 0.99900 1.21660 0.93641 1.01731 0.97822 1.18629 0.95867 0.87403 0.94266 0.94552 1.21168 0.92922 0.97911 1.42921 0.93009 1.24920 0.95811 0.97516 0.95579 1.69906 1.23103 1.12813 1.46917 0.86589 0.83833 0.79696 0.78177 1.19945 1.21036 1.21134 1.22340 0.87903 0.97790 0.97668 0.91540 0.91968 0.92530 0.88055 0.92368 0.91630 0.92576 0.92844 0.90923 0.91164 0.91148 0.91114 0.92375 0.91698 0.95955 0.93431 0.91938 0.95255 0.89099 0.93190 0.96813 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.17 37.16 0.34 -1.30 16 2 C 0.13 1.53 3.25 -67.93 -0.22 1.31 16 3 C -0.16 -1.42 9.19 37.16 0.34 -1.08 16 4 N -0.62 -8.03 2.76 -173.93 -0.48 -8.51 16 5 C 0.08 0.69 8.93 59.84 0.53 1.23 16 6 C 0.52 8.85 5.88 -10.99 -0.06 8.78 16 7 O -0.51 -10.96 14.98 5.56 0.08 -10.88 16 8 C 0.06 1.02 1.79 -68.86 -0.12 0.90 16 9 H 0.05 0.76 6.08 -51.93 -0.32 0.44 16 10 C -0.14 -1.76 8.67 37.16 0.32 -1.44 16 11 N -0.52 -10.22 4.21 -228.08 -0.96 -11.18 16 12 C 0.06 1.09 5.05 -3.83 -0.02 1.07 16 13 C -0.12 -2.35 6.09 -26.64 -0.16 -2.51 16 14 C -0.11 -2.70 5.03 -26.61 -0.13 -2.84 16 15 C 0.06 1.52 2.26 -91.69 -0.21 1.31 16 16 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.51 -14.66 8.56 -34.44 -0.29 -14.96 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.89 -26.18 11.36 55.43 0.63 -25.55 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.07 1.61 4.40 -3.83 -0.02 1.59 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.48 6.66 -51.93 -0.35 0.14 16 29 H 0.10 1.48 6.90 -51.93 -0.36 1.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 33 H 0.05 0.40 7.98 -51.93 -0.41 -0.02 16 34 H 0.07 0.66 5.86 -51.93 -0.30 0.36 16 35 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 36 H 0.07 0.79 6.19 -51.93 -0.32 0.47 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 39 H 0.06 0.98 5.85 -51.93 -0.30 0.68 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 1.53 6.44 -51.93 -0.33 1.20 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -32.65 353.21 -8.56 -41.21 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.34 Total: -1.10 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.20 Total: -6.23 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.81 Total: -45.24 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.65 -8.56 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.292 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds