Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.54629 * 2 1 4 4 C 1.53106 * 109.49899 * 120.10855 * 2 1 3 5 5 N 1.47013 * 109.25466 * 176.78344 * 4 2 1 6 6 C 1.46897 * 111.00288 * 177.61064 * 5 4 2 7 7 C 1.52997 * 109.47326 * 189.68153 * 6 5 4 8 8 N 1.46907 * 109.46987 * 179.97438 * 7 6 5 9 9 C 1.46852 * 110.99780 * 314.20619 * 8 7 6 10 10 C 1.53038 * 109.51991 * 174.16427 * 9 8 7 11 11 C 1.53121 * 109.28145 * 59.17795 * 10 9 8 12 12 C 1.53116 * 109.15919 * 302.34666 * 11 10 9 13 13 H 1.09002 * 109.50351 * 297.71191 * 12 11 10 14 14 C 1.50700 * 109.53480 * 177.61205 * 12 11 10 15 15 H 1.07992 * 120.00329 * 240.09746 * 14 12 11 16 16 C 1.37881 * 119.99818 * 60.09632 * 14 12 11 17 17 N 1.31518 * 119.99934 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00022 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46940 * 120.00173 * 18 16 14 21 21 H 1.48504 * 109.47070 * 240.00090 * 18 16 14 22 22 C 1.46851 * 110.99868 * 189.99760 * 8 7 6 23 23 C 1.47020 * 110.75239 * 301.38071 * 5 4 2 24 24 C 1.53095 * 109.25626 * 58.61826 * 23 5 4 25 25 O 1.43014 * 109.50780 * 239.88502 * 2 1 3 26 26 H 1.08998 * 109.47417 * 180.10532 * 1 2 3 27 27 H 1.09000 * 109.46940 * 300.11251 * 1 2 3 28 28 H 1.09006 * 109.46363 * 60.10964 * 1 2 3 29 29 H 1.09002 * 109.50898 * 56.84729 * 4 2 1 30 30 H 1.08996 * 109.50656 * 296.71651 * 4 2 1 31 31 H 1.09000 * 109.47496 * 69.67282 * 6 5 4 32 32 H 1.09006 * 109.46453 * 309.68003 * 6 5 4 33 33 H 1.08997 * 109.47326 * 59.99893 * 7 6 5 34 34 H 1.08999 * 109.46859 * 299.99292 * 7 6 5 35 35 H 1.08996 * 109.46331 * 294.17770 * 9 8 7 36 36 H 1.08998 * 109.46031 * 54.15532 * 9 8 7 37 37 H 1.09004 * 109.50259 * 179.12052 * 10 9 8 38 38 H 1.08998 * 109.50040 * 299.19508 * 10 9 8 39 39 H 1.08997 * 109.52457 * 182.43793 * 11 10 9 40 40 H 1.09000 * 109.52188 * 62.25069 * 11 10 9 41 41 H 0.97001 * 119.99543 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46045 * 65.82355 * 22 8 7 43 43 H 1.08995 * 109.46195 * 305.85676 * 22 8 7 44 44 H 1.09002 * 109.50812 * 178.54952 * 23 5 4 45 45 H 1.08998 * 109.50987 * 298.68542 * 23 5 4 46 46 H 1.09002 * 109.50814 * 63.08296 * 24 23 5 47 47 H 1.09003 * 109.51120 * 183.17189 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7240 1.2485 5 7 3.5091 -0.7886 1.2047 6 6 4.0444 -1.4271 2.4145 7 6 5.5651 -1.2619 2.4481 8 7 6.1003 -1.8999 3.6584 9 6 5.3047 -1.5395 4.8389 10 6 5.7994 -2.3329 6.0505 11 6 7.2780 -2.0168 6.2924 12 6 8.0772 -2.3558 5.0311 13 1 7.9954 -3.4229 4.8243 14 6 9.5250 -1.9932 5.2393 15 1 9.9989 -1.2698 4.5926 16 6 10.2446 -2.5851 6.2556 17 7 9.6677 -3.4665 7.0430 18 14 12.0391 -2.1351 6.5142 19 1 12.4472 -1.1267 5.5034 20 1 12.2164 -1.5701 7.8760 21 1 12.8801 -3.3505 6.3692 22 6 7.5166 -1.5618 3.8491 23 6 3.9639 -1.4887 -0.0056 24 6 3.4335 -0.7571 -1.2414 25 8 2.0076 -0.6764 -1.1661 26 1 -0.3634 -1.0276 0.0019 27 1 -0.3633 0.5156 0.8890 28 1 -0.3632 0.5122 -0.8911 29 1 1.6329 -1.7343 1.2761 30 1 1.7272 -0.1795 2.1391 31 1 3.7942 -2.4879 2.4066 32 1 3.6083 -0.9576 3.2963 33 1 5.8153 -0.2010 2.4562 34 1 6.0011 -1.7314 1.5664 35 1 5.4098 -0.4727 5.0359 36 1 4.2560 -1.7734 4.6553 37 1 5.2190 -2.0537 6.9299 38 1 5.6810 -3.3995 5.8600 39 1 7.6459 -2.6125 7.1278 40 1 7.3912 -0.9572 6.5216 41 1 10.1741 -3.8831 7.7577 42 1 7.6113 -0.4949 4.0507 43 1 8.0743 -1.8116 2.9465 44 1 5.0535 -1.5023 -0.0304 45 1 3.5865 -2.5112 0.0019 46 1 3.8535 0.2482 -1.2775 47 1 3.7208 -1.3040 -2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595619413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = -63.668714 kcal Electronic energy + Delta-G solvation = -23047.655289 eV Core-core repulsion = 19843.060292 eV Total energy + Delta-G solvation = -3204.594998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81977 -39.83629 -37.19053 -35.45565 -33.82903 -33.47681 -31.82250 -30.28435 -28.93509 -26.96916 -26.10806 -24.83142 -23.61694 -23.35359 -21.58376 -21.25924 -20.36167 -18.45528 -17.51624 -17.40214 -16.85962 -16.47106 -16.37576 -15.88511 -15.81383 -15.44580 -15.21444 -14.92456 -14.65446 -14.29130 -14.01210 -13.86419 -13.55719 -13.24822 -13.16904 -12.97294 -12.87539 -12.78812 -12.60745 -12.55062 -12.37581 -12.11954 -11.93804 -11.72777 -11.59186 -11.43346 -11.37848 -10.84324 -10.65701 -10.59091 -10.37785 -9.45480 -9.14845 -8.08635 -6.22721 1.39844 1.41545 1.52925 2.41434 2.57327 2.83322 3.18366 3.26142 3.72689 3.87335 3.96117 4.10079 4.15376 4.17547 4.21377 4.26818 4.31068 4.43390 4.47217 4.55558 4.60522 4.62329 4.68335 4.72152 4.75070 4.82864 4.86943 4.90074 4.94256 4.97977 5.01333 5.08566 5.11825 5.17297 5.28106 5.39013 5.51309 5.63369 5.86422 5.91830 5.96243 6.11532 6.19850 6.22479 6.35605 6.45000 6.90002 7.45193 8.96265 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037703 B = 0.003047 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.473140 B = 9186.679221 C = 9702.670804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.066 0.934 4 C 0.025 3.975 5 N -0.544 5.544 6 C 0.065 3.935 7 C 0.065 3.935 8 N -0.548 5.548 9 C 0.062 3.938 10 C -0.111 4.111 11 C -0.104 4.104 12 C 0.053 3.947 13 H -0.004 1.004 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.084 3.916 23 C 0.013 3.987 24 C 0.066 3.934 25 O -0.401 6.401 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.260 0.740 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.445 6.749 -12.603 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.084 0.916 4 C -0.103 4.103 5 N -0.270 5.270 6 C -0.063 4.063 7 C -0.063 4.063 8 N -0.273 5.273 9 C -0.066 4.066 10 C -0.149 4.149 11 C -0.143 4.143 12 C 0.034 3.966 13 H 0.015 0.985 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.044 4.044 23 C -0.115 4.115 24 C -0.011 4.011 25 O -0.321 6.321 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.392 6.541 -12.683 22.497 hybrid contribution 1.356 0.000 0.792 1.570 sum -16.036 6.541 -11.891 21.008 Atomic orbital electron populations 1.21756 0.91259 1.03074 1.03691 1.22296 0.96001 0.95284 0.83595 0.91615 1.22867 0.86888 1.00270 1.00251 1.62191 1.09565 1.52973 1.02239 1.22123 0.94114 0.97370 0.92678 1.22004 0.94556 0.96852 0.92844 1.62006 1.02741 1.59257 1.03319 1.22144 0.97656 0.96813 0.89955 1.21601 0.96452 0.99730 0.97140 1.21464 0.93770 0.98154 1.00888 1.18586 0.93000 0.93947 0.91081 0.98543 1.21548 0.96928 1.24161 1.14777 0.93106 1.25728 1.02252 0.94886 0.95672 1.70046 1.37511 1.28726 1.19222 0.85560 0.80326 0.78117 0.77972 1.19179 1.20575 1.20604 1.21958 0.87115 0.96433 0.98870 1.22887 1.01745 0.96029 0.90801 1.22733 0.80268 1.00624 0.97453 1.87956 1.21898 1.78685 1.43531 0.92194 0.89131 0.91280 0.94409 0.88510 0.94363 0.89635 0.94937 0.91068 0.95591 0.88915 0.91113 0.93142 0.92374 0.95902 0.93058 0.96685 0.92657 0.89126 0.94523 0.92106 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.57 71.98 0.69 -1.08 16 2 C 0.09 1.48 3.43 30.63 0.10 1.59 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C 0.03 0.46 4.93 86.32 0.43 0.89 16 5 N -0.54 -11.81 4.73 -895.19 -4.23 -16.04 16 6 C 0.06 1.56 4.21 86.30 0.36 1.92 16 7 C 0.07 1.90 5.20 86.30 0.45 2.35 16 8 N -0.55 -19.80 4.81 -896.35 -4.31 -24.11 16 9 C 0.06 2.05 4.85 86.32 0.42 2.47 16 10 C -0.11 -4.28 6.09 30.65 0.19 -4.09 16 11 C -0.10 -5.07 5.03 30.67 0.15 -4.91 16 12 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 13 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 14 C -0.54 -30.13 8.56 25.60 0.22 -29.91 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -53.67 11.36 21.45 0.24 -53.42 16 18 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 C 0.08 3.62 4.65 86.32 0.40 4.02 16 23 C 0.01 0.27 5.43 86.31 0.47 0.74 16 24 C 0.07 1.18 7.01 72.01 0.50 1.69 16 25 O -0.40 -8.33 10.47 -148.98 -1.56 -9.89 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 31 H 0.04 0.97 8.12 -2.39 -0.02 0.96 16 32 H 0.09 1.94 6.11 -2.38 -0.01 1.93 16 33 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.07 2.04 6.51 -2.39 -0.02 2.02 16 35 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 2.52 5.81 -2.39 -0.01 2.51 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 3.19 6.16 -2.39 -0.01 3.17 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 2.37 8.12 -2.39 -0.02 2.36 16 44 H 0.09 1.83 6.37 -2.39 -0.02 1.82 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -62.86 352.15 -2.12 -64.98 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.90 Total: 12.78 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.81 Total: -20.43 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -8.30 Total: -93.57 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.56 Total: -9.89 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.86 -2.12 -64.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.313 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds