Wall clock time and date at job start Tue Mar 31 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47316 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99816 * 2 1 3 5 5 N 1.46908 * 109.46844 * 185.53558 * 4 2 1 6 6 C 1.47017 * 110.99837 * 293.63107 * 5 4 2 7 7 C 1.53105 * 109.25338 * 177.60993 * 6 5 4 8 8 O 1.43013 * 109.25693 * 56.85389 * 7 6 5 9 9 C 1.43011 * 113.73774 * 301.32424 * 8 7 6 10 10 C 1.47018 * 110.99549 * 169.99880 * 5 4 2 11 11 N 1.46902 * 109.47038 * 119.99697 * 2 1 3 12 12 C 1.46840 * 111.00266 * 295.74327 * 11 2 1 13 13 C 1.53037 * 109.52610 * 185.83804 * 12 11 2 14 14 C 1.53117 * 109.27829 * 300.82259 * 13 12 11 15 15 C 1.53116 * 109.16298 * 57.65249 * 14 13 12 16 16 H 1.09004 * 109.50309 * 62.28261 * 15 14 13 17 17 C 1.50693 * 109.54018 * 182.38433 * 15 14 13 18 18 H 1.08007 * 120.00250 * 119.82052 * 17 15 14 19 19 C 1.37874 * 120.00129 * 299.82626 * 17 15 14 20 20 N 1.31511 * 119.99875 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00326 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47150 * 89.99376 * 21 19 17 23 23 H 1.48492 * 109.47028 * 209.99973 * 21 19 17 24 24 H 1.48503 * 109.47026 * 329.99759 * 21 19 17 25 25 C 1.46849 * 110.99792 * 59.95459 * 11 2 1 26 26 H 1.08990 * 109.47184 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46823 * 300.00470 * 1 2 3 28 28 H 1.09003 * 109.46608 * 60.00002 * 1 2 3 29 29 H 1.08993 * 109.47242 * 305.53245 * 4 2 1 30 30 H 1.08994 * 109.47279 * 65.53917 * 4 2 1 31 31 H 1.08998 * 109.50613 * 297.54584 * 6 5 4 32 32 H 1.08999 * 109.50326 * 57.68127 * 6 5 4 33 33 H 1.09001 * 109.50800 * 296.91474 * 7 6 5 34 34 H 1.09000 * 109.53774 * 176.81004 * 7 6 5 35 35 H 1.08998 * 109.51067 * 298.73726 * 9 8 7 36 36 H 1.08998 * 109.54703 * 178.63086 * 9 8 7 37 37 H 1.08996 * 109.51035 * 302.32716 * 10 5 4 38 38 H 1.08999 * 109.50740 * 62.45897 * 10 5 4 39 39 H 1.08998 * 109.46178 * 305.85711 * 12 11 2 40 40 H 1.08998 * 109.46168 * 65.82490 * 12 11 2 41 41 H 1.08999 * 109.50569 * 180.88176 * 13 12 11 42 42 H 1.08994 * 109.53266 * 60.78385 * 13 12 11 43 43 H 1.09000 * 109.52525 * 297.74976 * 14 13 12 44 44 H 1.08997 * 109.52333 * 177.55814 * 14 13 12 45 45 H 0.97002 * 120.00365 * 180.02562 * 20 19 17 46 46 H 1.08990 * 109.46298 * 294.17449 * 25 11 2 47 47 H 1.08999 * 109.46028 * 54.14444 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5029 -0.8381 -1.1843 6 6 4.1411 0.4838 -1.2667 7 6 5.6578 0.3212 -1.1355 8 8 6.1263 -0.5704 -2.1508 9 6 5.5259 -1.8674 -2.0997 10 6 4.0079 -1.7271 -2.2407 11 7 2.0196 -0.6924 1.1995 12 6 1.6337 0.0297 2.4184 13 6 2.2809 -0.6370 3.6345 14 6 1.8216 -2.0954 3.7157 15 6 2.1926 -2.8124 2.4147 16 1 3.2760 -2.8118 2.2950 17 6 1.6924 -4.2331 2.4618 18 1 0.9851 -4.5814 1.7237 19 6 2.1375 -5.0883 3.4474 20 7 2.9990 -4.6643 4.3461 21 14 1.5170 -6.8493 3.5064 22 1 2.4102 -7.7163 2.6967 23 1 1.5083 -7.3242 4.9133 24 1 0.1390 -6.9072 2.9559 25 6 1.5479 -2.0827 1.2340 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.5980 -1.7163 -1.3001 30 1 1.7599 -0.1535 -2.1364 31 1 3.9059 0.9422 -2.2272 32 1 3.7718 1.1171 -0.4601 33 1 5.8965 -0.0876 -0.1536 34 1 6.1400 1.2918 -1.2526 35 1 5.7607 -2.3399 -1.1460 36 1 5.9119 -2.4802 -2.9142 37 1 3.5413 -2.7076 -2.1452 38 1 3.7706 -1.3040 -3.2167 39 1 1.9699 1.0642 2.3495 40 1 0.5493 0.0068 2.5261 41 1 1.9817 -0.1102 4.5406 42 1 3.3658 -0.6022 3.5348 43 1 0.7411 -2.1297 3.8551 44 1 2.3139 -2.5861 4.5552 45 1 3.3126 -5.2661 5.0393 46 1 0.4639 -2.0956 1.3472 47 1 1.8218 -2.5823 0.3048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:58 Heat of formation + Delta-G solvation = -38.726036 kcal Electronic energy + Delta-G solvation = -24340.505196 eV Core-core repulsion = 21136.991794 eV Total energy + Delta-G solvation = -3203.513402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.62982 -38.46185 -35.82399 -33.95215 -32.24196 -31.04061 -29.80374 -29.23633 -27.76836 -24.91350 -24.59126 -23.86170 -23.02469 -21.22908 -20.38197 -19.66814 -18.14077 -16.54018 -16.33987 -15.94124 -15.49073 -14.93021 -14.78519 -14.56254 -14.40464 -14.08034 -13.78754 -13.54058 -13.19428 -12.81495 -12.54116 -12.36430 -12.01078 -11.90111 -11.67554 -11.49355 -11.45141 -11.23420 -11.01871 -10.89257 -10.76095 -10.60317 -10.43949 -10.16313 -9.99686 -9.73141 -9.50745 -9.34850 -8.90532 -8.59384 -8.22932 -8.04713 -7.39226 -5.90958 -3.96372 3.33514 3.40316 3.42880 3.86836 4.02165 4.45611 4.63313 4.93088 5.05798 5.11260 5.28337 5.31457 5.35343 5.39063 5.41020 5.53927 5.62792 5.69192 5.73553 5.75789 5.81890 5.91562 5.92668 5.97335 6.00434 6.10858 6.13137 6.13730 6.32794 6.44505 6.55538 6.67188 6.82282 6.86732 7.10597 7.17100 7.20439 7.29174 7.33264 7.52281 7.81210 7.85594 8.00023 8.21276 8.27966 8.57880 9.08358 9.67318 11.14984 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005614 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.981705 B = 4986.211820 C = 5742.265143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.070 0.930 4 C 0.067 3.933 5 N -0.508 5.508 6 C 0.025 3.975 7 C 0.065 3.935 8 O -0.392 6.392 9 C 0.065 3.935 10 C 0.020 3.980 11 N -0.509 5.509 12 C 0.062 3.938 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.034 0.966 17 C -0.511 4.511 18 H 0.050 0.950 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.072 3.928 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.014 0.986 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 10.685 -10.482 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.061 4.061 5 N -0.232 5.232 6 C -0.103 4.103 7 C -0.012 4.012 8 O -0.311 6.311 9 C -0.012 4.012 10 C -0.109 4.109 11 N -0.233 5.233 12 C -0.067 4.067 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.039 3.961 16 H 0.053 0.947 17 C -0.550 4.550 18 H 0.069 0.931 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.055 4.055 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.192 10.449 -10.024 14.529 hybrid contribution -1.835 -0.683 -0.438 2.006 sum -0.643 9.766 -10.462 14.326 Atomic orbital electron populations 1.22457 0.98121 1.02593 1.01480 1.21658 0.91719 0.97598 0.91576 0.91173 1.22187 0.87520 1.00858 0.95560 1.62019 1.05008 1.10577 1.45607 1.22724 0.95638 0.91597 1.00388 1.22639 0.92795 0.93722 0.92086 1.87915 1.65682 1.23606 1.53901 1.22638 0.91282 0.84744 1.02566 1.22765 0.96804 0.98597 0.92716 1.62138 1.58812 1.02825 0.99517 1.22028 0.96885 0.96366 0.91372 1.21644 1.00547 0.98532 0.94573 1.21640 0.98311 0.91606 1.03243 1.18613 0.96652 0.92150 0.88672 0.94735 1.21159 1.25762 0.95821 1.12240 0.93132 1.24915 0.95062 0.98085 0.95727 1.69894 1.31686 1.35179 1.15969 0.86690 0.79165 0.85577 0.77091 1.20784 1.21348 1.20125 1.22253 0.95782 0.86360 1.01063 0.91884 0.92343 0.93036 0.90319 0.95368 0.95218 0.89410 0.91715 0.89138 0.91651 0.88959 0.89603 0.94967 0.92976 0.96056 0.93944 0.92168 0.95476 0.89371 0.93185 0.96829 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 8.51 37.16 0.32 -2.19 16 2 C 0.08 1.22 2.14 -67.71 -0.14 1.07 16 3 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 4 C 0.07 0.93 3.93 -3.82 -0.02 0.91 16 5 N -0.51 -7.36 4.44 -234.30 -1.04 -8.40 16 6 C 0.02 0.32 5.44 -3.71 -0.02 0.30 16 7 C 0.06 0.82 7.01 37.21 0.26 1.08 16 8 O -0.39 -5.53 10.83 -35.23 -0.38 -5.91 16 9 C 0.06 0.84 7.01 37.21 0.26 1.10 16 10 C 0.02 0.26 5.65 -3.71 -0.02 0.24 16 11 N -0.51 -9.06 4.36 -226.70 -0.99 -10.05 16 12 C 0.06 1.07 5.01 -3.84 -0.02 1.05 16 13 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 14 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 15 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 16 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 18 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 19 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 20 N -0.89 -25.51 11.36 55.43 0.63 -24.88 16 21 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.07 1.50 3.86 -3.83 -0.01 1.49 16 26 H 0.06 0.93 6.53 -51.93 -0.34 0.59 16 27 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.17 6.48 -51.93 -0.34 0.84 16 30 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.12 6.50 -51.93 -0.34 0.78 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.02 0.37 6.71 -51.93 -0.35 0.03 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.01 0.29 6.63 -51.93 -0.34 -0.05 16 47 H 0.06 1.27 6.13 -51.93 -0.32 0.96 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -28.79 346.06 -10.37 -39.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.49 Total: 0.06 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.29 Total: -11.54 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -1.40 Total: -43.33 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.38 Total: -5.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.79 -10.37 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.433 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds