Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47316 * 2 1 4 4 C 1.53001 * 109.47028 * 239.99816 * 2 1 3 5 5 N 1.46908 * 109.46844 * 185.53558 * 4 2 1 6 6 C 1.47017 * 110.99837 * 293.63107 * 5 4 2 7 7 C 1.53105 * 109.25338 * 177.60993 * 6 5 4 8 8 O 1.43013 * 109.25693 * 56.85389 * 7 6 5 9 9 C 1.43011 * 113.73774 * 301.32424 * 8 7 6 10 10 C 1.47018 * 110.99549 * 169.99880 * 5 4 2 11 11 N 1.46902 * 109.47038 * 119.99697 * 2 1 3 12 12 C 1.46840 * 111.00266 * 295.74327 * 11 2 1 13 13 C 1.53037 * 109.52610 * 185.83804 * 12 11 2 14 14 C 1.53117 * 109.27829 * 300.82259 * 13 12 11 15 15 C 1.53116 * 109.16298 * 57.65249 * 14 13 12 16 16 H 1.09004 * 109.50309 * 62.28261 * 15 14 13 17 17 C 1.50693 * 109.54018 * 182.38433 * 15 14 13 18 18 H 1.08007 * 120.00250 * 119.82052 * 17 15 14 19 19 C 1.37874 * 120.00129 * 299.82626 * 17 15 14 20 20 N 1.31511 * 119.99875 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00326 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47150 * 89.99376 * 21 19 17 23 23 H 1.48492 * 109.47028 * 209.99973 * 21 19 17 24 24 H 1.48503 * 109.47026 * 329.99759 * 21 19 17 25 25 C 1.46849 * 110.99792 * 59.95459 * 11 2 1 26 26 H 1.08990 * 109.47184 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46823 * 300.00470 * 1 2 3 28 28 H 1.09003 * 109.46608 * 60.00002 * 1 2 3 29 29 H 1.08993 * 109.47242 * 305.53245 * 4 2 1 30 30 H 1.08994 * 109.47279 * 65.53917 * 4 2 1 31 31 H 1.08998 * 109.50613 * 297.54584 * 6 5 4 32 32 H 1.08999 * 109.50326 * 57.68127 * 6 5 4 33 33 H 1.09001 * 109.50800 * 296.91474 * 7 6 5 34 34 H 1.09000 * 109.53774 * 176.81004 * 7 6 5 35 35 H 1.08998 * 109.51067 * 298.73726 * 9 8 7 36 36 H 1.08998 * 109.54703 * 178.63086 * 9 8 7 37 37 H 1.08996 * 109.51035 * 302.32716 * 10 5 4 38 38 H 1.08999 * 109.50740 * 62.45897 * 10 5 4 39 39 H 1.08998 * 109.46178 * 305.85711 * 12 11 2 40 40 H 1.08998 * 109.46168 * 65.82490 * 12 11 2 41 41 H 1.08999 * 109.50569 * 180.88176 * 13 12 11 42 42 H 1.08994 * 109.53266 * 60.78385 * 13 12 11 43 43 H 1.09000 * 109.52525 * 297.74976 * 14 13 12 44 44 H 1.08997 * 109.52333 * 177.55814 * 14 13 12 45 45 H 0.97002 * 120.00365 * 180.02562 * 20 19 17 46 46 H 1.08990 * 109.46298 * 294.17449 * 25 11 2 47 47 H 1.08999 * 109.46028 * 54.14444 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5029 -0.8381 -1.1843 6 6 4.1411 0.4838 -1.2667 7 6 5.6578 0.3212 -1.1355 8 8 6.1263 -0.5704 -2.1508 9 6 5.5259 -1.8674 -2.0997 10 6 4.0079 -1.7271 -2.2407 11 7 2.0196 -0.6924 1.1995 12 6 1.6337 0.0297 2.4184 13 6 2.2809 -0.6370 3.6345 14 6 1.8216 -2.0954 3.7157 15 6 2.1926 -2.8124 2.4147 16 1 3.2760 -2.8118 2.2950 17 6 1.6924 -4.2331 2.4618 18 1 0.9851 -4.5814 1.7237 19 6 2.1375 -5.0883 3.4474 20 7 2.9990 -4.6643 4.3461 21 14 1.5170 -6.8493 3.5064 22 1 2.4102 -7.7163 2.6967 23 1 1.5083 -7.3242 4.9133 24 1 0.1390 -6.9072 2.9559 25 6 1.5479 -2.0827 1.2340 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.5980 -1.7163 -1.3001 30 1 1.7599 -0.1535 -2.1364 31 1 3.9059 0.9422 -2.2272 32 1 3.7718 1.1171 -0.4601 33 1 5.8965 -0.0876 -0.1536 34 1 6.1400 1.2918 -1.2526 35 1 5.7607 -2.3399 -1.1460 36 1 5.9119 -2.4802 -2.9142 37 1 3.5413 -2.7076 -2.1452 38 1 3.7706 -1.3040 -3.2167 39 1 1.9699 1.0642 2.3495 40 1 0.5493 0.0068 2.5261 41 1 1.9817 -0.1102 4.5406 42 1 3.3658 -0.6022 3.5348 43 1 0.7411 -2.1297 3.8551 44 1 2.3139 -2.5861 4.5552 45 1 3.3126 -5.2661 5.0393 46 1 0.4639 -2.0956 1.3472 47 1 1.8218 -2.5823 0.3048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595619421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -57.987075 kcal Electronic energy + Delta-G solvation = -24341.340417 eV Core-core repulsion = 21136.991794 eV Total energy + Delta-G solvation = -3204.348623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79875 -39.81010 -37.14095 -35.53747 -33.98622 -32.06558 -31.62408 -30.66210 -28.85755 -26.88773 -25.78172 -24.92982 -24.49089 -22.96914 -21.51863 -21.02385 -19.76346 -18.37685 -17.50576 -17.19339 -16.89618 -16.32206 -15.98084 -15.86553 -15.73477 -15.41816 -15.08587 -14.98269 -14.62401 -14.41257 -14.19452 -13.66225 -13.50324 -13.23436 -12.97323 -12.86216 -12.74640 -12.70183 -12.48326 -12.39287 -12.27867 -12.19652 -11.78078 -11.58493 -11.55168 -11.36780 -11.23634 -10.74520 -10.59067 -10.52711 -10.33089 -9.08755 -8.82341 -8.04361 -6.17815 1.40785 1.41205 1.51087 2.44248 2.81959 3.01485 3.22467 3.28811 3.82011 4.03208 4.07591 4.19238 4.26625 4.30729 4.32289 4.36510 4.41786 4.46638 4.50060 4.60983 4.69920 4.71155 4.74030 4.79372 4.82834 4.86620 4.88211 4.96271 4.98515 5.08076 5.10040 5.12149 5.19360 5.30477 5.37668 5.48420 5.59798 5.67264 6.06437 6.12996 6.15242 6.23236 6.26207 6.31795 6.58344 6.60824 6.96856 7.49648 9.00138 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005614 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.981705 B = 4986.211820 C = 5742.265143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 H 0.090 0.910 4 C 0.071 3.929 5 N -0.534 5.534 6 C 0.030 3.970 7 C 0.063 3.937 8 O -0.402 6.402 9 C 0.065 3.935 10 C 0.023 3.977 11 N -0.518 5.518 12 C 0.066 3.934 13 C -0.108 4.108 14 C -0.103 4.103 15 C 0.058 3.942 16 H -0.008 1.008 17 C -0.531 4.531 18 H 0.048 0.952 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.095 3.905 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.042 0.958 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.018 0.982 44 H 0.053 0.947 45 H 0.258 0.742 46 H 0.008 0.992 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 12.201 -11.848 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.024 4.024 3 H 0.108 0.892 4 C -0.057 4.057 5 N -0.259 5.259 6 C -0.098 4.098 7 C -0.014 4.014 8 O -0.321 6.321 9 C -0.012 4.012 10 C -0.106 4.106 11 N -0.242 5.242 12 C -0.062 4.062 13 C -0.146 4.146 14 C -0.141 4.141 15 C 0.039 3.961 16 H 0.010 0.990 17 C -0.570 4.570 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.775 3.225 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.033 4.033 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.061 0.939 36 H 0.132 0.868 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.297 11.978 -11.403 16.541 hybrid contribution -1.513 -1.141 -0.011 1.895 sum -1.216 10.838 -11.414 15.787 Atomic orbital electron populations 1.22381 0.96982 1.01795 1.02824 1.21770 0.92591 0.98033 0.89961 0.89204 1.22130 0.87215 1.00259 0.96134 1.61996 1.05533 1.11759 1.46602 1.22703 0.95242 0.90813 1.01047 1.22749 0.93321 0.94472 0.90865 1.87901 1.66079 1.23924 1.54194 1.22681 0.91508 0.84709 1.02276 1.22722 0.96578 0.98234 0.93016 1.62038 1.59369 1.01549 1.01217 1.22007 0.96895 0.97395 0.89891 1.21545 0.99836 0.96030 0.97178 1.21445 0.97243 0.94247 1.01193 1.18509 0.94113 0.92233 0.91211 0.99030 1.21533 1.25794 0.97463 1.12211 0.93421 1.25686 0.95249 1.02093 0.95398 1.70046 1.32637 1.36446 1.16429 0.85692 0.78877 0.80721 0.77170 1.20233 1.20955 1.19349 1.21800 0.94742 0.88143 0.98586 0.93726 0.92278 0.90404 0.91960 0.93147 0.94029 0.89092 0.93735 0.86567 0.93924 0.86759 0.90324 0.93702 0.89805 0.95637 0.91767 0.93472 0.96267 0.92880 0.93239 0.97378 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 8.51 71.98 0.61 -3.72 16 2 C 0.09 2.24 2.14 44.91 0.10 2.34 16 3 H 0.09 2.08 6.73 -2.38 -0.02 2.06 16 4 C 0.07 1.82 3.93 86.30 0.34 2.16 16 5 N -0.53 -14.83 4.44 -895.18 -3.97 -18.80 16 6 C 0.03 0.70 5.44 86.32 0.47 1.17 16 7 C 0.06 1.51 7.01 72.02 0.50 2.01 16 8 O -0.40 -10.87 10.83 -148.98 -1.61 -12.48 16 9 C 0.07 1.67 7.01 72.02 0.50 2.18 16 10 C 0.02 0.58 5.65 86.31 0.49 1.07 16 11 N -0.52 -17.85 4.36 -871.13 -3.80 -21.65 16 12 C 0.07 2.16 5.01 86.33 0.43 2.59 16 13 C -0.11 -4.21 6.09 30.65 0.19 -4.02 16 14 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 15 C 0.06 3.01 2.26 -11.49 -0.03 2.99 16 16 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 17 C -0.53 -30.03 8.56 25.60 0.22 -29.82 16 18 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 19 C 0.01 0.80 5.31 84.65 0.45 1.25 16 20 N -0.92 -54.38 11.36 21.45 0.24 -54.14 16 21 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.09 3.99 3.86 86.33 0.33 4.33 16 26 H 0.04 1.24 6.53 -2.39 -0.02 1.22 16 27 H 0.06 1.42 6.63 -2.39 -0.02 1.40 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.81 6.48 -2.39 -0.02 1.79 16 30 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 2.06 6.50 -2.39 -0.02 2.04 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 40 H 0.03 0.83 6.71 -2.39 -0.02 0.81 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 2.96 6.17 -2.39 -0.01 2.95 16 45 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.01 0.35 6.63 -2.39 -0.02 0.33 16 47 H 0.05 2.30 6.13 -2.39 -0.01 2.28 16 Total: -1.00 -63.76 346.06 -1.44 -65.20 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.92 Total: 15.71 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.76 Total: -20.37 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -7.53 Total: -94.59 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.61 Total: -12.48 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.76 -1.44 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.212 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds