Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47569 * 2 1 4 4 C 1.53004 * 109.46899 * 120.00292 * 2 1 3 5 5 N 1.46897 * 109.47213 * 174.61405 * 4 2 1 6 6 C 1.47013 * 111.00069 * 66.31117 * 5 4 2 7 7 C 1.53105 * 109.25791 * 182.35248 * 6 5 4 8 8 O 1.43014 * 109.29278 * 303.21981 * 7 6 5 9 9 C 1.43015 * 113.73903 * 58.64770 * 8 7 6 10 10 C 1.47013 * 110.99951 * 189.99747 * 5 4 2 11 11 N 1.46898 * 109.46867 * 239.99385 * 2 1 3 12 12 C 1.46848 * 110.99763 * 72.21059 * 11 2 1 13 13 C 1.53039 * 109.52221 * 174.15919 * 12 11 2 14 14 C 1.53120 * 109.28151 * 59.17619 * 13 12 11 15 15 C 1.53113 * 109.15966 * 302.34851 * 14 13 12 16 16 H 1.09006 * 109.50242 * 297.70777 * 15 14 13 17 17 C 1.50703 * 109.50325 * 177.59481 * 15 14 13 18 18 H 1.08004 * 120.00071 * 240.19892 * 17 15 14 19 19 C 1.37876 * 120.00278 * 60.19064 * 17 15 14 20 20 N 1.31523 * 119.99700 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00087 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46794 * 90.00480 * 21 19 17 23 23 H 1.48504 * 109.46796 * 210.00065 * 21 19 17 24 24 H 1.48492 * 109.47277 * 330.00097 * 21 19 17 25 25 C 1.46843 * 111.00559 * 307.99712 * 11 2 1 26 26 H 1.08993 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46700 * 300.00736 * 1 2 3 28 28 H 1.09002 * 109.46692 * 59.99806 * 1 2 3 29 29 H 1.08994 * 109.47585 * 54.60413 * 4 2 1 30 30 H 1.09006 * 109.46973 * 294.60650 * 4 2 1 31 31 H 1.09005 * 109.47180 * 62.44224 * 6 5 4 32 32 H 1.08999 * 109.54987 * 302.31262 * 6 5 4 33 33 H 1.08996 * 109.50925 * 183.26649 * 7 6 5 34 34 H 1.09002 * 109.50547 * 63.17195 * 7 6 5 35 35 H 1.09005 * 109.50932 * 61.25870 * 9 8 7 36 36 H 1.08997 * 109.50992 * 181.35105 * 9 8 7 37 37 H 1.08995 * 109.51023 * 57.67188 * 10 5 4 38 38 H 1.09003 * 109.50578 * 297.53626 * 10 5 4 39 39 H 1.09000 * 109.46436 * 294.17267 * 12 11 2 40 40 H 1.08995 * 109.46515 * 54.14492 * 12 11 2 41 41 H 1.09005 * 109.50608 * 299.23372 * 13 12 11 42 42 H 1.09003 * 109.53541 * 179.14209 * 13 12 11 43 43 H 1.08994 * 109.52282 * 182.43745 * 14 13 12 44 44 H 1.09007 * 109.51586 * 62.24886 * 14 13 12 45 45 H 0.96998 * 119.99950 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46196 * 305.85777 * 25 11 2 47 47 H 1.09002 * 109.46126 * 65.82393 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5032 -0.8350 1.1861 6 6 4.1385 0.4882 1.2692 7 6 5.6558 0.3288 1.1407 8 8 6.1249 -0.5626 2.1559 9 6 5.5273 -1.8609 2.1031 10 6 4.0087 -1.7238 2.2424 11 7 2.0196 -0.6926 -1.1994 12 6 1.8001 0.1199 -2.4027 13 6 2.4500 -0.5644 -3.6074 14 6 1.8376 -1.9559 -3.7897 15 6 2.0373 -2.7650 -2.5052 16 1 3.1035 -2.8936 -2.3182 17 6 1.3856 -4.1156 -2.6549 18 1 0.5951 -4.4114 -1.9810 19 6 1.7983 -4.9736 -3.6521 20 7 2.7612 -4.6135 -4.4725 21 14 0.9900 -6.6473 -3.8380 22 1 -0.1717 -6.5366 -4.7564 23 1 1.9717 -7.6119 -4.3957 24 1 0.5275 -7.1239 -2.5098 25 6 1.3994 -2.0170 -1.3325 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6000 -1.7173 1.2989 30 1 1.7576 -0.1548 2.1367 31 1 3.9006 0.9458 2.2295 32 1 3.7695 1.1213 0.4623 33 1 6.1352 1.3004 1.2598 34 1 5.8972 -0.0784 0.1589 35 1 5.7641 -2.3321 1.1492 36 1 5.9143 -2.4731 2.9176 37 1 3.5443 -2.7051 2.1455 38 1 3.7693 -1.3019 3.2185 39 1 0.7297 0.2259 -2.5791 40 1 2.2441 1.1053 -2.2616 41 1 3.5227 -0.6583 -3.4378 42 1 2.2742 0.0309 -4.5035 43 1 2.3280 -2.4638 -4.6202 44 1 0.7719 -1.8603 -3.9980 45 1 3.0519 -5.2173 -5.1738 46 1 1.5523 -2.5836 -0.4139 47 1 0.3309 -1.9010 -1.5138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = -39.376379 kcal Electronic energy + Delta-G solvation = -24282.967361 eV Core-core repulsion = 21079.425758 eV Total energy + Delta-G solvation = -3203.541603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61796 -38.46592 -35.84121 -33.94932 -32.26515 -31.05716 -29.78860 -29.25444 -27.76216 -24.90782 -24.61969 -23.87441 -23.00280 -21.26687 -20.38950 -19.65267 -18.15933 -16.54311 -16.34413 -15.95586 -15.48871 -14.94191 -14.79123 -14.58735 -14.40657 -14.07123 -13.79414 -13.54153 -13.18878 -12.80822 -12.54558 -12.36222 -12.02280 -11.92754 -11.68127 -11.49239 -11.45873 -11.24709 -11.02359 -10.89745 -10.76556 -10.60442 -10.45284 -10.18606 -9.99586 -9.73661 -9.52618 -9.35439 -8.91843 -8.60129 -8.23269 -8.04626 -7.39323 -5.91307 -3.96821 3.33281 3.40228 3.42915 3.85972 4.00992 4.45105 4.61864 4.93348 5.04362 5.10234 5.26665 5.31218 5.34047 5.38643 5.40531 5.53439 5.62881 5.67656 5.73454 5.76015 5.80912 5.90047 5.91878 5.97052 5.99789 6.10360 6.12764 6.13264 6.32840 6.43540 6.54153 6.65146 6.81865 6.86188 7.09608 7.15944 7.20468 7.27932 7.32863 7.51788 7.80805 7.85020 7.99528 8.20458 8.27396 8.57229 9.07874 9.66906 11.14622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016098 B = 0.005330 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.884142 B = 5252.038139 C = 5859.236493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 H 0.069 0.931 4 C 0.069 3.931 5 N -0.508 5.508 6 C 0.025 3.975 7 C 0.065 3.935 8 O -0.392 6.392 9 C 0.065 3.935 10 C 0.020 3.980 11 N -0.509 5.509 12 C 0.063 3.937 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.057 3.943 16 H 0.035 0.965 17 C -0.511 4.511 18 H 0.051 0.949 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.887 3.113 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.072 3.928 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.020 0.980 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.258 0.742 46 H 0.057 0.943 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 10.602 10.846 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.026 4.026 3 H 0.087 0.913 4 C -0.059 4.059 5 N -0.232 5.232 6 C -0.104 4.104 7 C -0.012 4.012 8 O -0.311 6.311 9 C -0.012 4.012 10 C -0.109 4.109 11 N -0.233 5.233 12 C -0.065 4.065 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.039 3.961 16 H 0.053 0.947 17 C -0.550 4.550 18 H 0.069 0.931 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.055 4.055 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.984 10.300 10.429 14.792 hybrid contribution -1.934 -0.518 0.300 2.024 sum 0.050 9.782 10.729 14.519 Atomic orbital electron populations 1.22451 0.97992 1.02702 1.01392 1.21654 0.91809 0.97378 0.91743 0.91253 1.22152 0.87385 1.00851 0.95502 1.61989 1.05153 1.10467 1.45586 1.22724 0.95643 0.91625 1.00374 1.22638 0.92804 0.93732 0.92068 1.87918 1.65790 1.23513 1.53870 1.22643 0.91346 0.84718 1.02522 1.22761 0.96746 0.98614 0.92739 1.62114 1.57797 1.03179 1.00164 1.22016 0.97417 0.95596 0.91483 1.21647 1.00616 0.98359 0.94673 1.21639 0.97836 0.92298 1.03002 1.18623 0.96831 0.91908 0.88779 0.94720 1.21163 1.19291 1.00156 1.14412 0.93111 1.24920 0.95005 0.97951 0.95933 1.69900 1.28334 1.36081 1.18411 0.86682 0.79142 0.84470 0.78181 1.20882 1.21300 1.20061 1.22253 0.94926 0.87687 1.00612 0.91676 0.93067 0.92481 0.90421 0.95410 0.95216 0.89487 0.89138 0.91746 0.91701 0.88956 0.89612 0.94971 0.96213 0.92974 0.92137 0.93940 0.89358 0.95473 0.93179 0.92453 0.96586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 8.41 37.16 0.31 -2.20 16 2 C 0.08 1.21 2.08 -67.71 -0.14 1.07 16 3 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 4 C 0.07 0.96 4.18 -3.82 -0.02 0.94 16 5 N -0.51 -7.30 4.44 -234.30 -1.04 -8.34 16 6 C 0.02 0.31 5.44 -3.71 -0.02 0.29 16 7 C 0.06 0.81 7.01 37.21 0.26 1.07 16 8 O -0.39 -5.45 10.83 -35.23 -0.38 -5.83 16 9 C 0.06 0.83 7.01 37.21 0.26 1.09 16 10 C 0.02 0.26 5.65 -3.71 -0.02 0.24 16 11 N -0.51 -9.05 4.30 -226.69 -0.98 -10.02 16 12 C 0.06 1.09 5.17 -3.83 -0.02 1.08 16 13 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 14 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 15 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 18 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.51 11.36 55.43 0.63 -24.88 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.07 1.50 3.71 -3.84 -0.01 1.49 16 26 H 0.06 0.96 6.45 -51.93 -0.33 0.63 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 29 H 0.08 1.16 6.64 -51.93 -0.34 0.81 16 30 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.10 6.50 -51.93 -0.34 0.76 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.35 6.95 -51.93 -0.36 -0.01 16 40 H 0.05 0.80 7.99 -51.93 -0.42 0.39 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 1.21 6.42 -51.93 -0.33 0.88 16 47 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -28.80 346.67 -10.38 -39.18 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.52 Total: -0.12 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.29 Total: -11.55 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -1.39 Total: -43.24 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.38 Total: -5.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.80 -10.38 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.198 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds