Wall clock time and date at job start Tue Mar 31 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09008 * 109.47407 * 2 1 4 4 C 1.50700 * 109.46953 * 240.00599 * 2 1 3 5 5 O 1.21287 * 119.99910 * 265.54498 * 4 2 1 6 6 N 1.34773 * 120.00421 * 85.54877 * 4 2 1 7 7 C 1.46504 * 119.99917 * 5.07857 * 6 4 2 8 8 C 1.46498 * 120.00042 * 185.07974 * 6 4 2 9 9 C 1.50696 * 109.47259 * 90.00087 * 8 6 4 10 10 H 1.08007 * 119.99953 * 359.97438 * 9 8 6 11 11 C 1.37883 * 120.00367 * 179.97438 * 9 8 6 12 12 N 1.31513 * 119.99342 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99972 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47041 * 90.00409 * 13 11 9 15 15 H 1.48501 * 109.47145 * 210.00129 * 13 11 9 16 16 H 1.48496 * 109.47655 * 330.00044 * 13 11 9 17 17 N 1.46897 * 109.47435 * 120.00492 * 2 1 3 18 18 C 1.46904 * 111.00321 * 181.64643 * 17 2 1 19 19 C 1.46901 * 110.99678 * 305.59626 * 17 2 1 20 20 C 1.52999 * 109.46880 * 169.99719 * 19 17 2 21 21 H 1.09000 * 115.55545 * 29.42393 * 20 19 17 22 22 C 1.53005 * 117.49890 * 243.74591 * 20 19 17 23 23 C 1.53004 * 117.49719 * 175.08977 * 20 19 17 24 24 C 1.53004 * 117.49822 * 214.98010 * 23 20 19 25 25 C 1.52994 * 117.50000 * 359.97438 * 23 20 19 26 26 H 1.09004 * 109.47327 * 307.36354 * 1 2 3 27 27 H 1.09005 * 109.47470 * 67.35745 * 1 2 3 28 28 H 1.09003 * 109.47599 * 187.35978 * 1 2 3 29 29 H 1.09002 * 109.46890 * 86.77141 * 7 6 4 30 30 H 1.08998 * 109.46978 * 206.76877 * 7 6 4 31 31 H 1.09000 * 109.47191 * 326.77417 * 7 6 4 32 32 H 1.09003 * 109.47352 * 209.99550 * 8 6 4 33 33 H 1.09001 * 109.47194 * 329.99888 * 8 6 4 34 34 H 0.97000 * 119.99575 * 179.97438 * 12 11 9 35 35 H 1.08999 * 109.47034 * 188.73632 * 18 17 2 36 36 H 1.08998 * 109.46646 * 308.73210 * 18 17 2 37 37 H 1.08997 * 109.47033 * 68.73306 * 18 17 2 38 38 H 1.08996 * 109.47761 * 289.99701 * 19 17 2 39 39 H 1.09001 * 109.47126 * 50.00369 * 19 17 2 40 40 H 1.08993 * 117.49796 * 0.02562 * 22 20 19 41 41 H 1.09004 * 117.49646 * 145.02406 * 22 20 19 42 42 H 1.09005 * 109.46895 * 59.99811 * 24 23 20 43 43 H 1.08993 * 109.47122 * 179.97438 * 24 23 20 44 44 H 1.08994 * 109.47090 * 300.00015 * 24 23 20 45 45 H 1.09000 * 109.47378 * 60.00155 * 25 23 20 46 46 H 1.09006 * 109.47613 * 180.02562 * 25 23 20 47 47 H 1.09008 * 109.47352 * 299.99876 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.3112 -1.8895 -1.1787 6 7 2.1714 -0.0353 -2.3887 7 6 1.9416 1.4112 -2.4257 8 6 2.5525 -0.7479 -3.6106 9 6 1.3120 -1.2176 -4.3259 10 1 0.3372 -1.0068 -3.9114 11 6 1.4214 -1.9165 -5.5094 12 7 2.6085 -2.1736 -6.0137 13 14 -0.1162 -2.4993 -6.3954 14 1 -0.5679 -1.4506 -7.3449 15 1 0.1857 -3.7466 -7.1426 16 1 -1.1890 -2.7641 -5.4034 17 7 2.0196 -0.6926 1.1993 18 6 3.4876 -0.6781 1.2531 19 6 1.4425 -0.1081 2.4172 20 6 1.7716 -0.9998 3.6162 21 1 2.7021 -1.5626 3.5422 22 6 0.6014 -1.6621 4.3463 23 6 1.3552 -0.5024 5.0019 24 6 2.2765 -0.8336 6.1777 25 6 0.6422 0.8489 5.0826 26 1 -0.3634 0.6237 0.8168 27 1 -0.3634 0.3956 -0.9485 28 1 -0.3634 -1.0192 0.1316 29 1 2.8627 1.9321 -2.1644 30 1 1.6305 1.7041 -3.4284 31 1 1.1608 1.6734 -1.7118 32 1 3.1153 -0.0784 -4.2612 33 1 3.1704 -1.6078 -3.3521 34 1 2.6855 -2.6657 -6.8461 35 1 3.8279 -1.3257 2.0612 36 1 3.8894 -1.0375 0.3058 37 1 3.8346 0.3395 1.4324 38 1 1.8615 0.8853 2.5774 39 1 0.3607 -0.0327 2.3067 40 1 -0.4028 -1.4630 3.9722 41 1 0.7622 -2.6606 4.7529 42 1 3.2614 -0.4014 6.0004 43 1 1.8581 -0.4194 7.0949 44 1 2.3666 -1.9154 6.2751 45 1 -0.2795 0.8086 4.5021 46 1 0.4072 1.0743 6.1229 47 1 1.2912 1.6268 4.6804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595915286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:05 Heat of formation + Delta-G solvation = -5.610999 kcal Electronic energy + Delta-G solvation = -23185.658572 eV Core-core repulsion = 19983.581145 eV Total energy + Delta-G solvation = -3202.077426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74757 -38.73164 -36.36544 -34.69061 -32.64648 -31.19660 -29.69694 -28.12070 -27.79149 -26.87054 -25.77805 -24.66283 -23.50374 -21.65807 -20.40447 -18.87166 -18.11050 -16.72057 -16.48685 -15.80467 -15.44481 -15.01012 -14.84677 -14.46645 -14.17352 -13.97485 -13.63170 -13.36024 -13.25944 -12.80375 -12.59304 -12.45488 -12.25541 -12.13678 -12.09707 -11.98275 -11.79528 -11.58456 -11.45604 -11.30600 -11.23457 -11.08744 -10.87406 -10.82769 -10.54433 -10.13439 -9.89989 -9.64597 -9.59524 -8.76384 -8.41719 -8.07358 -7.57939 -6.02318 -4.07107 3.31192 3.37794 3.40407 3.42750 3.54021 3.79265 4.25025 4.46724 4.52964 4.65596 4.73337 4.89260 5.03522 5.24357 5.29803 5.32030 5.34798 5.35909 5.39257 5.51044 5.53425 5.66079 5.67310 5.69638 5.70870 5.73950 5.77388 5.78663 5.85773 5.89945 5.91825 5.92945 6.12004 6.16750 6.18996 6.30122 6.39045 6.99523 7.17153 7.23217 7.48463 7.59253 7.94872 8.25995 8.47257 8.93321 9.17873 9.58167 11.05721 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030152 B = 0.003433 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.410119 B = 8154.093470 C = 8264.153023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 H 0.053 0.947 4 C 0.512 3.488 5 O -0.521 6.521 6 N -0.606 5.606 7 C 0.083 3.917 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.516 5.516 18 C 0.024 3.976 19 C 0.084 3.916 20 C -0.133 4.133 21 H 0.108 0.892 22 C -0.165 4.165 23 C -0.135 4.135 24 C -0.113 4.113 25 C -0.114 4.114 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 8.955 20.559 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 H 0.071 0.929 4 C 0.297 3.703 5 O -0.397 6.397 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.240 5.240 18 C -0.124 4.124 19 C -0.043 4.043 20 C -0.152 4.152 21 H 0.126 0.874 22 C -0.202 4.202 23 C -0.135 4.135 24 C -0.170 4.170 25 C -0.171 4.171 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.250 7.738 20.365 21.901 hybrid contribution -0.547 0.552 -0.638 1.005 sum -2.797 8.290 19.727 21.580 Atomic orbital electron populations 1.21803 0.92495 1.03517 1.02067 1.21660 0.97072 0.95620 0.90308 0.92882 1.20039 0.78941 0.87517 0.83834 1.90667 1.49059 1.15526 1.84405 1.48163 1.67888 1.07555 1.10317 1.21658 0.99434 0.82106 1.02976 1.19271 0.96169 0.92576 0.79305 1.21446 0.92973 1.35654 1.06404 0.92479 1.24942 0.96235 0.95734 0.97234 1.69936 1.22351 1.40597 1.20520 0.86498 0.83166 0.78229 0.79544 1.20681 1.21087 1.19856 1.61646 1.07698 1.54369 1.00316 1.22438 0.87167 0.99115 1.03630 1.21753 1.00090 0.94487 0.87988 1.22411 0.99718 1.02054 0.90969 0.87439 1.23271 0.96732 0.96621 1.03534 1.21647 1.02024 0.95757 0.94105 1.21333 0.98410 1.01275 0.96016 1.21325 0.99505 0.94601 1.01698 0.92185 0.91296 0.90801 0.94041 0.90638 0.92590 0.95124 0.93791 0.92735 0.91294 0.90510 0.96253 0.94790 0.90140 0.88876 0.89021 0.92406 0.92327 0.92494 0.92412 0.92363 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.27 37.15 0.31 -1.70 16 2 C 0.07 1.05 1.63 -68.87 -0.11 0.93 16 3 H 0.05 0.75 6.72 -51.92 -0.35 0.40 16 4 C 0.51 10.96 5.78 -10.99 -0.06 10.90 16 5 O -0.52 -13.54 15.17 5.55 0.08 -13.46 16 6 N -0.61 -13.11 2.86 -182.95 -0.52 -13.63 16 7 C 0.08 1.34 9.87 59.85 0.59 1.93 16 8 C 0.25 6.54 5.18 -5.20 -0.03 6.51 16 9 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 17 N -0.52 -7.92 4.33 -236.29 -1.02 -8.94 16 18 C 0.02 0.36 9.05 60.07 0.54 0.90 16 19 C 0.08 1.00 4.04 -3.82 -0.02 0.99 16 20 C -0.13 -1.46 5.42 -90.62 -0.49 -1.95 16 21 H 0.11 1.28 6.44 -51.93 -0.33 0.94 16 22 C -0.16 -1.65 9.47 -26.69 -0.25 -1.91 16 23 C -0.13 -1.22 2.70 -154.47 -0.42 -1.64 16 24 C -0.11 -0.89 9.85 37.16 0.37 -0.52 16 25 C -0.11 -0.90 8.86 37.15 0.33 -0.57 16 26 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 27 H 0.07 0.99 7.38 -51.93 -0.38 0.61 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 31 H 0.06 0.75 5.61 -51.93 -0.29 0.46 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 0.92 6.49 -51.93 -0.34 0.58 16 36 H 0.08 1.36 6.28 -51.93 -0.33 1.04 16 37 H 0.02 0.25 8.08 -51.93 -0.42 -0.17 16 38 H 0.03 0.38 7.70 -51.93 -0.40 -0.02 16 39 H 0.08 0.92 5.56 -51.93 -0.29 0.63 16 40 H 0.09 0.92 7.94 -51.93 -0.41 0.50 16 41 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 44 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 45 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 46 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 47 H 0.06 0.45 7.84 -51.92 -0.41 0.05 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -33.06 367.80 -8.25 -41.31 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.38 Total: -1.81 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 0.34 Total: 0.13 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.81 Total: -48.72 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.06 -8.25 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.695 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds