Wall clock time and date at job start Tue Mar 31 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 O 1.21276 * 120.00368 * 119.99496 * 4 2 1 6 6 N 1.34778 * 119.99391 * 299.99784 * 4 2 1 7 7 C 1.46503 * 120.00221 * 359.97438 * 6 4 2 8 8 C 1.46506 * 119.99629 * 180.02562 * 6 4 2 9 9 C 1.50697 * 109.46964 * 90.00119 * 8 6 4 10 10 H 1.07998 * 120.00144 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99702 * 180.02562 * 9 8 6 12 12 N 1.31520 * 120.00055 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99917 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47195 * 89.99759 * 13 11 9 15 15 H 1.48502 * 109.47111 * 209.99511 * 13 11 9 16 16 H 1.48497 * 109.47343 * 329.99720 * 13 11 9 17 17 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 18 18 C 1.46901 * 111.00443 * 306.04832 * 17 2 1 19 19 C 1.46906 * 110.99820 * 70.00145 * 17 2 1 20 20 C 1.52996 * 109.47022 * 169.99926 * 19 17 2 21 21 H 1.08997 * 115.55201 * 29.27824 * 20 19 17 22 22 C 1.53003 * 117.49770 * 243.60913 * 20 19 17 23 23 C 1.53000 * 117.49892 * 174.98714 * 20 19 17 24 24 C 1.52995 * 117.50060 * 214.97986 * 23 20 19 25 25 C 1.53001 * 117.49864 * 359.97438 * 23 20 19 26 26 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 27 27 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47061 * 90.00602 * 7 6 4 30 30 H 1.09002 * 109.46928 * 210.00030 * 7 6 4 31 31 H 1.09000 * 109.47067 * 330.00213 * 7 6 4 32 32 H 1.09003 * 109.46915 * 209.99970 * 8 6 4 33 33 H 1.09004 * 109.46767 * 329.99572 * 8 6 4 34 34 H 0.96996 * 119.99893 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.47401 * 183.95136 * 18 17 2 36 36 H 1.09001 * 109.46874 * 63.95149 * 18 17 2 37 37 H 1.09004 * 109.46970 * 303.95282 * 18 17 2 38 38 H 1.08997 * 109.46995 * 289.99871 * 19 17 2 39 39 H 1.09001 * 109.46848 * 49.99877 * 19 17 2 40 40 H 1.09002 * 117.50196 * 359.97438 * 22 20 19 41 41 H 1.08998 * 117.50018 * 145.00448 * 22 20 19 42 42 H 1.09003 * 109.47552 * 59.99904 * 24 23 20 43 43 H 1.09003 * 109.47319 * 179.97438 * 24 23 20 44 44 H 1.09000 * 109.47278 * 299.99612 * 24 23 20 45 45 H 1.09005 * 109.46822 * 60.00189 * 25 23 20 46 46 H 1.09001 * 109.47498 * 180.02562 * 25 23 20 47 47 H 1.09002 * 109.47400 * 300.00756 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 0.8650 0.9415 2.5890 8 6 2.1956 -0.9403 3.6507 9 6 3.5230 -0.3562 4.0606 10 1 3.9590 0.4484 3.4872 11 6 4.1811 -0.8498 5.1670 12 7 3.6503 -1.8300 5.8650 13 14 5.8268 -0.1263 5.6747 14 1 5.6032 0.9987 6.6180 15 1 6.6444 -1.1735 6.3383 16 1 6.5412 0.3711 4.4716 17 7 2.0196 -0.6926 -1.1994 18 6 1.4343 -2.0355 -1.3078 19 6 1.7529 0.0972 -2.4090 20 6 2.4884 -0.5257 -3.5972 21 1 2.6414 -1.6035 -3.5428 22 6 3.5799 0.3097 -4.2692 23 6 2.2431 0.0846 -4.9786 24 6 2.2312 -0.8647 -6.1784 25 6 1.2807 1.2707 -5.0662 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.1830 0.6440 2.6222 30 1 1.1229 1.4667 3.5086 31 1 1.0289 1.6002 1.7361 32 1 1.4777 -0.8151 4.4614 33 1 2.3170 -2.0016 3.4336 34 1 4.1135 -2.1775 6.6432 35 1 1.8663 -2.5522 -2.1648 36 1 0.3555 -1.9520 -1.4399 37 1 1.6466 -2.5988 -0.3991 38 1 0.6814 0.1052 -2.6087 39 1 2.1025 1.1188 -2.2603 40 1 3.7737 1.3033 -3.8651 41 1 4.4509 -0.2184 -4.6570 42 1 1.4431 -1.6063 -6.0472 43 1 2.0463 -0.2962 -7.0898 44 1 3.1950 -1.3682 -6.2530 45 1 1.6562 2.0894 -4.4521 46 1 1.2025 1.5996 -6.1024 47 1 0.2973 0.9681 -4.7062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595915288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:10 Heat of formation + Delta-G solvation = 0.596078 kcal Electronic energy + Delta-G solvation = -23207.769475 eV Core-core repulsion = 20005.961207 eV Total energy + Delta-G solvation = -3201.808267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84340 -38.74654 -36.45966 -34.78340 -32.69131 -30.99872 -29.38102 -28.00962 -27.53004 -26.89016 -26.19777 -25.10067 -23.38047 -21.58511 -20.35137 -18.80732 -18.20415 -16.75313 -16.36016 -15.74762 -15.32873 -15.13400 -14.60578 -14.45737 -14.25595 -13.99166 -13.77633 -13.56104 -13.07570 -12.83226 -12.76842 -12.51627 -12.28056 -12.21039 -12.14608 -11.94620 -11.69702 -11.47928 -11.33991 -11.27126 -11.12297 -11.04000 -10.88350 -10.83506 -10.52990 -10.11302 -9.88075 -9.63883 -9.57172 -8.73076 -8.40146 -8.00713 -7.56289 -6.00850 -4.05223 3.32729 3.39388 3.43263 3.49503 3.52401 3.81497 4.26788 4.49057 4.54936 4.68272 4.74986 4.90804 5.02365 5.16469 5.24840 5.33588 5.36791 5.38371 5.39989 5.48719 5.53918 5.60644 5.68845 5.71283 5.71929 5.75715 5.76330 5.79116 5.80285 5.90073 5.93172 5.95428 6.12299 6.13815 6.22110 6.29307 6.44349 7.01686 7.22109 7.28232 7.48661 7.60213 7.96305 8.27612 8.48346 8.95336 9.19329 9.59997 11.07208 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.003611 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.062286 B = 7751.450752 C = 8184.498308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.099 0.901 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.513 5.513 18 C 0.017 3.983 19 C 0.088 3.912 20 C -0.133 4.133 21 H 0.109 0.891 22 C -0.165 4.165 23 C -0.135 4.135 24 C -0.113 4.113 25 C -0.114 4.114 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 6.435 -19.661 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.297 3.703 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.236 5.236 18 C -0.130 4.130 19 C -0.040 4.040 20 C -0.152 4.152 21 H 0.127 0.873 22 C -0.202 4.202 23 C -0.135 4.135 24 C -0.170 4.170 25 C -0.171 4.171 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.565 5.722 -19.487 21.673 hybrid contribution 0.092 0.584 0.355 0.690 sum -7.473 6.306 -19.132 21.486 Atomic orbital electron populations 1.22655 0.96107 1.03249 1.03277 1.21647 0.93704 0.98751 0.90641 0.88334 1.20048 0.81094 0.85225 0.83900 1.90629 1.36951 1.26414 1.85804 1.48124 1.49985 1.28304 1.07286 1.21764 0.93711 0.88270 1.02398 1.19261 0.94132 0.93689 0.80133 1.21449 1.04850 1.18963 1.11045 0.92468 1.24937 0.97940 0.94963 0.96311 1.69935 1.39077 1.26124 1.18405 0.86499 0.83717 0.78651 0.78583 1.20697 1.21107 1.19845 1.61777 1.58686 1.02763 1.00401 1.22597 0.95751 0.90574 1.04107 1.21658 0.97206 0.96673 0.88439 1.22424 1.01892 0.99393 0.91454 0.87348 1.23265 0.92059 1.01381 1.03514 1.21633 0.98964 0.99332 0.93602 1.21333 1.01795 0.98117 0.95795 1.21324 0.98261 0.95834 1.01683 0.90193 0.92257 0.91767 0.93600 0.90893 0.92469 0.95116 0.93900 0.92768 0.91823 0.96145 0.89122 0.94507 0.91014 0.88899 0.89018 0.92403 0.92339 0.92491 0.92421 0.92380 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.08 37.16 0.30 -2.12 16 2 C 0.06 1.01 1.93 -68.86 -0.13 0.88 16 3 H 0.10 1.44 7.19 -51.93 -0.37 1.06 16 4 C 0.51 10.85 6.77 -10.98 -0.07 10.77 16 5 O -0.52 -13.36 13.91 5.56 0.08 -13.29 16 6 N -0.60 -12.91 2.86 -182.94 -0.52 -13.43 16 7 C 0.08 1.30 8.80 59.85 0.53 1.83 16 8 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 9 C -0.52 -15.11 9.39 -34.44 -0.32 -15.44 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 13 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 N -0.51 -7.92 4.45 -236.28 -1.05 -8.97 16 18 C 0.02 0.26 8.32 60.07 0.50 0.76 16 19 C 0.09 1.05 3.89 -3.82 -0.01 1.04 16 20 C -0.13 -1.50 5.41 -90.62 -0.49 -1.99 16 21 H 0.11 1.33 6.38 -51.93 -0.33 0.99 16 22 C -0.17 -1.71 9.47 -26.73 -0.25 -1.97 16 23 C -0.13 -1.25 2.70 -154.51 -0.42 -1.66 16 24 C -0.11 -0.91 9.85 37.16 0.37 -0.55 16 25 C -0.11 -0.92 8.86 37.16 0.33 -0.59 16 26 H 0.08 0.93 4.53 -51.92 -0.24 0.69 16 27 H 0.06 0.62 6.91 -51.93 -0.36 0.26 16 28 H 0.06 0.85 6.42 -51.93 -0.33 0.52 16 29 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 36 H 0.02 0.27 6.46 -51.93 -0.34 -0.07 16 37 H 0.09 1.67 5.82 -51.93 -0.30 1.36 16 38 H 0.04 0.41 6.68 -51.93 -0.35 0.06 16 39 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 40 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 41 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 44 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 45 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 46 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 47 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -33.01 360.09 -8.25 -41.26 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.09 Total: -1.11 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 0.19 Total: -0.86 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.84 Total: -48.63 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.01 -8.25 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595915288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.860 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds