Wall clock time and date at job start Tue Mar 31 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47463 * 2 1 4 4 C 1.52996 * 109.47178 * 239.99368 * 2 1 3 5 5 N 1.46896 * 109.47025 * 62.91569 * 4 2 1 6 6 C 1.46901 * 110.99700 * 196.22630 * 5 4 2 7 7 C 1.46898 * 111.00577 * 72.27123 * 5 4 2 8 8 C 1.50697 * 109.47622 * 190.00369 * 7 5 4 9 9 O 1.21292 * 119.99668 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00246 * 180.02562 * 8 7 5 11 11 C 1.37092 * 120.00039 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00370 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00138 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00307 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47157 * 89.99912 * 15 13 11 17 17 H 1.48493 * 109.47246 * 210.00083 * 15 13 11 18 18 H 1.48501 * 109.46850 * 330.00290 * 15 13 11 19 19 C 1.53008 * 109.47210 * 119.99312 * 2 1 3 20 20 C 1.52999 * 109.46888 * 300.00410 * 19 2 1 21 21 C 1.53003 * 109.46580 * 179.97438 * 20 19 2 22 22 C 1.52991 * 109.47594 * 59.99519 * 21 20 19 23 23 C 1.52999 * 109.47591 * 300.00282 * 22 21 20 24 24 C 1.52992 * 109.47210 * 179.97438 * 19 2 1 25 25 H 1.09002 * 109.47104 * 55.69904 * 1 2 3 26 26 H 1.09006 * 109.47589 * 175.70176 * 1 2 3 27 27 H 1.09006 * 109.47438 * 295.70389 * 1 2 3 28 28 H 1.09000 * 109.47415 * 302.91432 * 4 2 1 29 29 H 1.09001 * 109.46911 * 182.91274 * 4 2 1 30 30 H 1.08996 * 109.47617 * 54.70190 * 6 5 4 31 31 H 1.09012 * 109.46883 * 174.69478 * 6 5 4 32 32 H 1.08997 * 109.47453 * 294.69443 * 6 5 4 33 33 H 1.09008 * 109.46886 * 310.00176 * 7 5 4 34 34 H 1.09002 * 109.46905 * 69.99575 * 7 5 4 35 35 H 0.96995 * 119.99500 * 359.97438 * 10 8 7 36 36 H 0.97001 * 120.00387 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46346 * 60.00004 * 19 2 1 38 38 H 1.08999 * 109.46847 * 299.99182 * 20 19 2 39 39 H 1.08999 * 109.47315 * 60.00110 * 20 19 2 40 40 H 1.08999 * 109.46945 * 299.99222 * 21 20 19 41 41 H 1.09006 * 109.47131 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47385 * 179.97438 * 22 21 20 43 43 H 1.09012 * 109.47024 * 60.00115 * 22 21 20 44 44 H 1.09008 * 109.46352 * 299.99800 * 23 22 21 45 45 H 1.08998 * 109.47384 * 179.97438 * 23 22 21 46 46 H 1.09006 * 109.47164 * 299.99949 * 24 19 2 47 47 H 1.08999 * 109.47549 * 60.00191 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 1.6086 0.0105 -2.4476 6 6 1.7347 -0.8257 -3.6488 7 6 2.3595 1.2641 -2.5977 8 6 1.7311 2.0992 -3.6833 9 8 0.7540 1.6901 -4.2742 10 7 2.2553 3.3002 -3.9983 11 6 1.6839 4.0597 -4.9863 12 1 0.8139 3.6955 -5.5125 13 6 2.2240 5.2982 -5.3107 14 7 3.2823 5.7417 -4.6702 15 14 1.4450 6.3334 -6.6564 16 1 0.4097 7.2178 -6.0638 17 1 2.4892 7.1625 -7.3101 18 1 0.8168 5.4427 -7.6650 19 6 2.0400 -0.7211 1.2494 20 6 1.5299 0.0002 2.4985 21 6 2.0394 -0.7213 3.7478 22 6 3.5693 -0.7219 3.7481 23 6 4.0794 -1.4432 2.4990 24 6 3.5699 -0.7217 1.2491 25 1 -0.3633 0.5791 -0.8490 26 1 -0.3634 -1.0248 -0.0770 27 1 -0.3634 0.4457 0.9260 28 1 1.6346 -1.7328 -1.2756 29 1 3.1287 -0.7668 -1.2233 30 1 1.1890 -1.7577 -3.5016 31 1 1.3216 -0.2944 -4.5063 32 1 2.7868 -1.0454 -3.8298 33 1 2.3384 1.8150 -1.6573 34 1 3.3923 1.0393 -2.8640 35 1 3.0368 3.6272 -3.5260 36 1 3.6596 6.6060 -4.8968 37 1 1.6766 -1.7488 1.2494 38 1 1.8933 1.0279 2.4984 39 1 0.4399 0.0002 2.4985 40 1 1.6756 -1.7488 3.7477 41 1 1.6764 -0.2071 4.6378 42 1 3.9323 -1.2355 4.6384 43 1 3.9331 0.3057 3.7483 44 1 3.7157 -2.4708 2.4989 45 1 5.1694 -1.4432 2.4990 46 1 3.9329 -1.2359 0.3591 47 1 3.9337 0.3058 1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599633372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:38 Heat of formation + Delta-G solvation = -65.157472 kcal Electronic energy + Delta-G solvation = -23044.297290 eV Core-core repulsion = 19839.637735 eV Total energy + Delta-G solvation = -3204.659555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.48418 -38.36937 -36.51849 -34.07195 -33.48738 -31.19648 -30.98002 -29.13163 -27.95699 -26.70619 -24.71035 -23.51913 -22.54319 -21.53801 -19.94262 -19.79958 -18.91892 -17.77791 -16.27338 -15.86371 -15.04083 -14.81539 -14.70718 -14.49695 -14.22941 -13.93849 -13.64078 -13.63646 -13.37425 -13.13018 -12.76419 -12.55079 -12.34228 -11.95382 -11.72516 -11.46557 -11.38110 -11.32463 -11.22570 -11.18924 -11.13034 -10.98597 -10.91220 -10.54270 -10.37105 -10.25918 -10.17598 -9.94857 -9.90316 -9.43461 -8.34948 -7.92736 -7.72034 -6.37918 -3.78433 3.20226 3.28460 3.34333 3.96226 4.08471 4.28862 4.55926 4.59626 4.67223 4.90994 5.04950 5.16210 5.24007 5.26929 5.27622 5.33442 5.37818 5.41154 5.53462 5.59843 5.64005 5.68329 5.80719 5.84344 5.86424 5.89790 5.94791 6.01156 6.02949 6.04460 6.05956 6.13053 6.15470 6.20083 6.30836 6.35449 6.35713 6.55854 6.62987 6.70987 7.39565 7.52885 7.58938 8.11074 8.66834 9.22532 9.59545 10.12000 10.80007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.003374 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.349236 B = 8296.735269 C = 8742.043434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.070 0.930 4 C 0.058 3.942 5 N -0.516 5.516 6 C 0.024 3.976 7 C 0.045 3.955 8 C 0.446 3.554 9 O -0.577 6.577 10 N -0.566 5.566 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.012 0.988 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -12.998 15.265 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.070 4.070 5 N -0.239 5.239 6 C -0.124 4.124 7 C -0.087 4.087 8 C 0.231 3.769 9 O -0.461 6.461 10 N -0.203 5.203 11 C -0.427 4.427 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.545 5.545 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.098 4.098 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.030 0.970 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.224 0.776 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.956 -12.978 14.877 19.765 hybrid contribution 1.134 0.614 -0.419 1.356 sum 2.091 -12.364 14.459 19.139 Atomic orbital electron populations 1.21746 0.94518 1.01526 1.01744 1.21174 0.96775 0.99545 0.92694 0.91167 1.22270 0.97364 0.97176 0.90212 1.61547 1.55706 1.04166 1.02529 1.22520 0.98290 0.97008 0.94595 1.21906 0.95033 0.92008 0.99708 1.19785 0.86942 0.83368 0.86799 1.90473 1.28220 1.71965 1.55481 1.41871 1.28599 1.15724 1.34125 1.19691 1.12179 0.98401 1.12408 0.87966 1.25245 0.96319 0.97514 0.98914 1.69614 1.22117 1.20782 1.41958 0.85872 0.78439 0.79511 0.80551 1.20427 1.20992 1.19460 1.21162 0.94892 0.99535 0.94241 1.21643 1.00615 0.99367 0.93722 1.21533 0.95565 1.00614 0.97921 1.21538 0.95884 1.00735 0.97583 1.21537 0.99920 0.99303 0.94854 1.21688 0.95541 1.00900 0.97494 0.91061 0.93521 0.93429 0.91258 0.94925 0.92478 0.88647 0.96992 0.89464 0.93784 0.77561 0.91947 0.91456 0.91986 0.91546 0.92255 0.92348 0.92510 0.92066 0.92258 0.92347 0.91804 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.77 37.15 0.33 -1.45 16 2 C -0.08 -1.01 1.98 -90.62 -0.18 -1.19 16 3 H 0.07 0.94 6.52 -51.93 -0.34 0.61 16 4 C 0.06 0.76 4.12 -3.83 -0.02 0.75 16 5 N -0.52 -8.76 3.90 -244.37 -0.95 -9.71 16 6 C 0.02 0.40 9.18 60.07 0.55 0.95 16 7 C 0.04 0.83 5.30 -4.98 -0.03 0.80 16 8 C 0.45 10.68 7.52 -10.99 -0.08 10.59 16 9 O -0.58 -15.67 13.88 5.55 0.08 -15.60 16 10 N -0.57 -14.56 5.29 -10.97 -0.06 -14.61 16 11 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 15 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.08 -0.79 1.77 -90.62 -0.16 -0.95 16 20 C -0.12 -1.09 4.86 -26.73 -0.13 -1.22 16 21 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -0.97 5.92 -26.74 -0.16 -1.13 16 23 C -0.12 -0.99 5.92 -26.70 -0.16 -1.15 16 24 C -0.12 -1.14 4.86 -26.71 -0.13 -1.27 16 25 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.55 6.21 -51.93 -0.32 0.22 16 28 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 29 H 0.03 0.41 6.18 -51.93 -0.32 0.09 16 30 H 0.06 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.10 1.93 5.91 -51.92 -0.31 1.63 16 32 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 33 H 0.09 1.49 6.38 -51.92 -0.33 1.16 16 34 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -29.90 356.88 -8.83 -38.72 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.41 Total: 8.10 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.56 Total: -4.43 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.29 Total: -48.41 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.90 -8.83 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599633372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.433 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds