Wall clock time and date at job start Tue Mar 31 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47463 * 2 1 4 4 C 1.52996 * 109.47178 * 239.99368 * 2 1 3 5 5 N 1.46896 * 109.47025 * 62.91569 * 4 2 1 6 6 C 1.46901 * 110.99700 * 196.22630 * 5 4 2 7 7 C 1.46898 * 111.00577 * 72.27123 * 5 4 2 8 8 C 1.50697 * 109.47622 * 190.00369 * 7 5 4 9 9 O 1.21292 * 119.99668 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00246 * 180.02562 * 8 7 5 11 11 C 1.37092 * 120.00039 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00370 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00138 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00307 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47157 * 89.99912 * 15 13 11 17 17 H 1.48493 * 109.47246 * 210.00083 * 15 13 11 18 18 H 1.48501 * 109.46850 * 330.00290 * 15 13 11 19 19 C 1.53008 * 109.47210 * 119.99312 * 2 1 3 20 20 C 1.52999 * 109.46888 * 300.00410 * 19 2 1 21 21 C 1.53003 * 109.46580 * 179.97438 * 20 19 2 22 22 C 1.52991 * 109.47594 * 59.99519 * 21 20 19 23 23 C 1.52999 * 109.47591 * 300.00282 * 22 21 20 24 24 C 1.52992 * 109.47210 * 179.97438 * 19 2 1 25 25 H 1.09002 * 109.47104 * 55.69904 * 1 2 3 26 26 H 1.09006 * 109.47589 * 175.70176 * 1 2 3 27 27 H 1.09006 * 109.47438 * 295.70389 * 1 2 3 28 28 H 1.09000 * 109.47415 * 302.91432 * 4 2 1 29 29 H 1.09001 * 109.46911 * 182.91274 * 4 2 1 30 30 H 1.08996 * 109.47617 * 54.70190 * 6 5 4 31 31 H 1.09012 * 109.46883 * 174.69478 * 6 5 4 32 32 H 1.08997 * 109.47453 * 294.69443 * 6 5 4 33 33 H 1.09008 * 109.46886 * 310.00176 * 7 5 4 34 34 H 1.09002 * 109.46905 * 69.99575 * 7 5 4 35 35 H 0.96995 * 119.99500 * 359.97438 * 10 8 7 36 36 H 0.97001 * 120.00387 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46346 * 60.00004 * 19 2 1 38 38 H 1.08999 * 109.46847 * 299.99182 * 20 19 2 39 39 H 1.08999 * 109.47315 * 60.00110 * 20 19 2 40 40 H 1.08999 * 109.46945 * 299.99222 * 21 20 19 41 41 H 1.09006 * 109.47131 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47385 * 179.97438 * 22 21 20 43 43 H 1.09012 * 109.47024 * 60.00115 * 22 21 20 44 44 H 1.09008 * 109.46352 * 299.99800 * 23 22 21 45 45 H 1.08998 * 109.47384 * 179.97438 * 23 22 21 46 46 H 1.09006 * 109.47164 * 299.99949 * 24 19 2 47 47 H 1.08999 * 109.47549 * 60.00191 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 1.6086 0.0105 -2.4476 6 6 1.7347 -0.8257 -3.6488 7 6 2.3595 1.2641 -2.5977 8 6 1.7311 2.0992 -3.6833 9 8 0.7540 1.6901 -4.2742 10 7 2.2553 3.3002 -3.9983 11 6 1.6839 4.0597 -4.9863 12 1 0.8139 3.6955 -5.5125 13 6 2.2240 5.2982 -5.3107 14 7 3.2823 5.7417 -4.6702 15 14 1.4450 6.3334 -6.6564 16 1 0.4097 7.2178 -6.0638 17 1 2.4892 7.1625 -7.3101 18 1 0.8168 5.4427 -7.6650 19 6 2.0400 -0.7211 1.2494 20 6 1.5299 0.0002 2.4985 21 6 2.0394 -0.7213 3.7478 22 6 3.5693 -0.7219 3.7481 23 6 4.0794 -1.4432 2.4990 24 6 3.5699 -0.7217 1.2491 25 1 -0.3633 0.5791 -0.8490 26 1 -0.3634 -1.0248 -0.0770 27 1 -0.3634 0.4457 0.9260 28 1 1.6346 -1.7328 -1.2756 29 1 3.1287 -0.7668 -1.2233 30 1 1.1890 -1.7577 -3.5016 31 1 1.3216 -0.2944 -4.5063 32 1 2.7868 -1.0454 -3.8298 33 1 2.3384 1.8150 -1.6573 34 1 3.3923 1.0393 -2.8640 35 1 3.0368 3.6272 -3.5260 36 1 3.6596 6.6060 -4.8968 37 1 1.6766 -1.7488 1.2494 38 1 1.8933 1.0279 2.4984 39 1 0.4399 0.0002 2.4985 40 1 1.6756 -1.7488 3.7477 41 1 1.6764 -0.2071 4.6378 42 1 3.9323 -1.2355 4.6384 43 1 3.9331 0.3057 3.7483 44 1 3.7157 -2.4708 2.4989 45 1 5.1694 -1.4432 2.4990 46 1 3.9329 -1.2359 0.3591 47 1 3.9337 0.3058 1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599633372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:37 Heat of formation + Delta-G solvation = -82.855335 kcal Electronic energy + Delta-G solvation = -23045.064727 eV Core-core repulsion = 19839.637735 eV Total energy + Delta-G solvation = -3205.426992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62850 -39.86693 -37.84336 -35.92386 -34.69806 -33.26693 -31.68795 -30.01028 -29.54005 -27.84086 -26.62413 -24.60706 -23.31905 -22.63372 -21.20287 -20.63534 -20.42779 -19.78374 -17.90418 -16.96504 -16.67886 -16.15218 -16.05945 -15.80918 -15.43596 -15.11907 -15.00867 -14.86757 -14.43161 -14.23545 -13.87872 -13.78908 -13.53079 -13.28409 -13.12391 -13.04674 -12.72240 -12.59643 -12.45833 -12.40056 -12.17844 -12.11461 -12.04277 -11.92039 -11.78071 -11.47656 -11.35625 -11.19912 -10.75771 -10.69052 -10.22844 -9.99061 -9.09535 -8.45593 -5.94175 1.38003 1.41300 1.54172 2.06694 2.29156 2.83406 3.21067 3.41848 3.77292 3.83671 3.94040 4.02152 4.24011 4.28770 4.36058 4.42786 4.47407 4.50282 4.51606 4.60262 4.64802 4.68353 4.72458 4.77351 4.78913 4.85346 4.89464 5.00338 5.09653 5.14594 5.20602 5.26731 5.30588 5.33552 5.38702 5.41514 5.41753 5.47492 5.53975 5.65266 5.71429 5.92259 6.11948 6.30101 6.62183 7.14264 7.57746 8.14068 8.71999 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.003374 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.349236 B = 8296.735269 C = 8742.043434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.061 3.939 5 N -0.533 5.533 6 C 0.028 3.972 7 C 0.059 3.941 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.331 4.331 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.922 5.922 15 Si 0.992 3.008 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.070 4.070 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.118 4.118 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -13.841 16.524 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.066 4.066 5 N -0.257 5.257 6 C -0.120 4.120 7 C -0.072 4.072 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.213 5.213 11 C -0.461 4.461 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.816 3.184 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.156 4.156 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.653 -13.829 16.162 21.335 hybrid contribution 0.904 0.829 -0.777 1.452 sum 2.557 -13.000 15.385 20.303 Atomic orbital electron populations 1.21679 0.95109 1.01490 1.00736 1.21143 0.96180 0.98990 0.93498 0.92633 1.22344 0.98225 0.97363 0.88643 1.61507 1.56254 1.04110 1.03861 1.22402 0.99166 0.97183 0.93223 1.21738 0.95303 0.92199 0.97978 1.20778 0.86218 0.82969 0.87053 1.90453 1.29859 1.72644 1.56923 1.41942 1.28905 1.16363 1.34137 1.19652 1.12590 0.99837 1.14026 0.90359 1.26029 0.96593 0.97941 1.00741 1.69676 1.22609 1.21279 1.42719 0.84936 0.77943 0.77790 0.77723 1.19668 1.19510 1.19774 1.21076 0.95205 0.99529 0.93123 1.21634 1.00575 0.98992 0.94162 1.21517 0.95668 1.00801 0.97389 1.21546 0.95736 1.00527 0.97959 1.21524 1.00235 0.99414 0.94220 1.21675 0.95076 1.00574 0.98258 0.94583 0.92613 0.92307 0.89828 0.93662 0.90223 0.92720 0.95618 0.87969 0.92053 0.77172 0.91345 0.90673 0.92921 0.91606 0.91655 0.91791 0.91431 0.92671 0.91633 0.91878 0.91783 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.77 71.98 0.63 -2.67 16 2 C -0.08 -1.82 1.98 -10.79 -0.02 -1.84 16 3 H 0.06 1.45 6.52 -2.39 -0.02 1.43 16 4 C 0.06 1.50 4.12 86.30 0.36 1.85 16 5 N -0.53 -17.69 3.90 -927.05 -3.61 -21.31 16 6 C 0.03 0.93 9.18 127.69 1.17 2.10 16 7 C 0.06 2.15 5.30 85.56 0.45 2.61 16 8 C 0.44 21.72 7.52 87.66 0.66 22.38 16 9 O -0.61 -34.53 13.88 -3.07 -0.04 -34.57 16 10 N -0.58 -30.36 5.29 -306.99 -1.62 -31.98 16 11 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 15 Si 0.99 43.59 29.55 68.60 2.03 45.61 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C -0.07 -1.25 1.77 -10.79 -0.02 -1.27 16 20 C -0.12 -1.98 4.86 30.59 0.15 -1.83 16 21 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 22 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 23 C -0.12 -1.66 5.92 30.61 0.18 -1.48 16 24 C -0.12 -2.01 4.86 30.61 0.15 -1.86 16 25 H 0.03 1.14 7.82 -2.39 -0.02 1.12 16 26 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.30 6.21 -2.38 -0.01 1.28 16 28 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 29 H 0.05 1.02 6.18 -2.39 -0.01 1.01 16 30 H 0.08 2.21 7.97 -2.39 -0.02 2.19 16 31 H 0.05 2.26 5.91 -2.38 -0.01 2.25 16 32 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.10 3.43 6.38 -2.38 -0.02 3.42 16 34 H 0.06 2.04 8.11 -2.39 -0.02 2.02 16 35 H 0.39 19.85 7.90 -92.71 -0.73 19.11 16 36 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.12 6.34 -2.39 -0.02 1.11 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 44 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.08 6.37 -2.38 -0.02 1.07 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.15 356.88 2.59 -62.56 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.20 Total: 33.51 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.35 Total: -3.61 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -4.95 Total: -103.50 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.04 Total: -34.57 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.15 2.59 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599633372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.292 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds