Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47484 * 2 1 4 4 C 1.52998 * 109.47012 * 120.00085 * 2 1 3 5 5 N 1.46893 * 109.47138 * 294.99647 * 4 2 1 6 6 C 1.46901 * 111.00360 * 293.95275 * 5 4 2 7 7 C 1.46906 * 110.99932 * 169.99992 * 5 4 2 8 8 C 1.50703 * 109.47109 * 190.00029 * 7 5 4 9 9 O 1.21296 * 119.99996 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99978 * 180.02562 * 8 7 5 11 11 C 1.37099 * 119.99848 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00405 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99358 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00464 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99431 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47204 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00140 * 15 13 11 18 18 H 1.48498 * 109.47371 * 240.00040 * 15 13 11 19 19 C 1.53003 * 109.46954 * 239.99927 * 2 1 3 20 20 C 1.52998 * 109.47229 * 180.02562 * 19 2 1 21 21 C 1.52998 * 109.47493 * 180.02562 * 20 19 2 22 22 C 1.53011 * 109.47039 * 59.99400 * 21 20 19 23 23 C 1.52998 * 109.47467 * 300.00615 * 22 21 20 24 24 C 1.52999 * 109.46812 * 60.00031 * 19 2 1 25 25 H 1.09004 * 109.46635 * 300.00319 * 1 2 3 26 26 H 1.09001 * 109.46926 * 59.99780 * 1 2 3 27 27 H 1.08998 * 109.47484 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46647 * 174.99601 * 4 2 1 29 29 H 1.08994 * 109.47184 * 55.00307 * 4 2 1 30 30 H 1.08995 * 109.47046 * 296.04847 * 6 5 4 31 31 H 1.09008 * 109.46903 * 56.04730 * 6 5 4 32 32 H 1.08999 * 109.47457 * 176.04446 * 6 5 4 33 33 H 1.08992 * 109.47459 * 309.99948 * 7 5 4 34 34 H 1.09004 * 109.47040 * 70.00098 * 7 5 4 35 35 H 0.97002 * 119.99767 * 359.97438 * 10 8 7 36 36 H 0.96997 * 119.99770 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.47084 * 300.00318 * 19 2 1 38 38 H 1.09011 * 109.47119 * 299.99828 * 20 19 2 39 39 H 1.08993 * 109.47275 * 59.99599 * 20 19 2 40 40 H 1.09007 * 109.46930 * 300.00329 * 21 20 19 41 41 H 1.08990 * 109.47369 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47005 * 180.02562 * 22 21 20 43 43 H 1.09007 * 109.46502 * 60.00666 * 22 21 20 44 44 H 1.09002 * 109.47013 * 300.00245 * 23 22 21 45 45 H 1.08991 * 109.47026 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47646 * 300.00154 * 24 19 2 47 47 H 1.09002 * 109.47527 * 60.00336 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.3342 1.3374 2.4894 7 6 1.9125 -0.7358 3.6671 8 6 1.2831 -0.0398 4.8463 9 8 0.6763 0.9980 4.6850 10 7 1.3944 -0.5705 6.0802 11 6 0.8214 0.0624 7.1528 12 1 0.2811 0.9865 7.0092 13 6 0.9358 -0.4851 8.4248 14 7 1.5928 -1.6097 8.5995 15 14 0.1556 0.3777 9.8865 16 1 -0.5223 1.6162 9.4263 17 1 -0.8393 -0.5243 10.5204 18 1 1.2076 0.7266 10.8747 19 6 2.0400 -0.7213 -1.2493 20 6 3.5700 -0.7219 -1.2490 21 6 4.0800 -1.4426 -2.4985 22 6 3.5704 -0.7204 -3.7475 23 6 2.0404 -0.7198 -3.7478 24 6 1.5299 0.0000 -2.4985 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7198 1.2951 30 1 3.4089 1.1803 2.5807 31 1 2.1241 1.8892 1.5732 32 1 1.9762 1.9071 3.3469 33 1 1.4857 -1.7334 3.5638 34 1 2.9883 -0.8153 3.8238 35 1 1.8794 -1.4006 6.2091 36 1 1.6729 -1.9916 9.4875 37 1 1.6766 -1.7489 -1.2493 38 1 3.9337 0.3057 -1.2488 39 1 3.9330 -1.2359 -0.3591 40 1 3.7162 -2.4701 -2.4992 41 1 5.1699 -1.4426 -2.4986 42 1 3.9333 -1.2341 -4.6377 43 1 3.9341 0.3071 -3.7469 44 1 1.6767 -1.7474 -3.7484 45 1 1.6774 -0.2050 -4.6373 46 1 0.4399 0.0001 -2.4985 47 1 1.8933 1.0277 -2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599633373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -64.801827 kcal Electronic energy + Delta-G solvation = -22795.628355 eV Core-core repulsion = 19590.984222 eV Total energy + Delta-G solvation = -3204.644133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51939 -38.39039 -36.58125 -34.08361 -33.48118 -31.19857 -31.03211 -29.21799 -27.78080 -26.81174 -24.84101 -23.55748 -22.59649 -21.59040 -19.96832 -19.57081 -19.06271 -17.79394 -16.22736 -15.88882 -15.19224 -14.85023 -14.73732 -14.46474 -14.31975 -13.96380 -13.80630 -13.50796 -13.44823 -13.12481 -12.87342 -12.56190 -12.31668 -11.99769 -11.72742 -11.48550 -11.43517 -11.28332 -11.26684 -11.22114 -11.12675 -11.03432 -10.88317 -10.61197 -10.31890 -10.28770 -10.19210 -10.00787 -9.96188 -9.45002 -8.36208 -7.92979 -7.72046 -6.38396 -3.78861 3.18419 3.28632 3.35998 3.95897 4.05423 4.28114 4.51446 4.55834 4.63440 4.88726 5.01261 5.11741 5.20373 5.24552 5.24996 5.30470 5.32580 5.36314 5.48672 5.55828 5.60334 5.73359 5.74882 5.79877 5.82845 5.86916 5.91545 5.97427 5.98941 6.01210 6.06023 6.07271 6.10968 6.16221 6.26026 6.30541 6.34390 6.48180 6.63990 6.68432 7.39505 7.52404 7.58818 8.10962 8.66389 9.22226 9.59183 10.11483 10.79643 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044381 B = 0.002817 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.749038 B = 9938.848055 C =10205.070588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.070 0.930 4 C 0.056 3.944 5 N -0.516 5.516 6 C 0.021 3.979 7 C 0.046 3.954 8 C 0.446 3.554 9 O -0.577 6.577 10 N -0.567 5.567 11 C -0.296 4.296 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.903 5.903 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.080 4.080 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -1.232 -21.690 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.072 4.072 5 N -0.239 5.239 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.231 3.769 9 O -0.461 6.461 10 N -0.204 5.204 11 C -0.426 4.426 12 H 0.121 0.879 13 C -0.181 4.181 14 N -0.545 5.545 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.099 4.099 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.679 -0.542 -21.636 21.953 hybrid contribution 0.908 -0.443 0.951 1.387 sum 4.587 -0.985 -20.685 21.211 Atomic orbital electron populations 1.21768 0.94531 1.01521 1.01910 1.21167 0.96703 0.99483 0.92656 0.91145 1.22278 0.97543 0.97281 0.90061 1.61544 1.58343 1.03634 1.00391 1.22563 0.94576 0.91749 1.03764 1.21864 0.98615 0.97585 0.90493 1.19776 0.85827 0.87507 0.83747 1.90476 1.45982 1.24952 1.84678 1.41885 1.48852 1.24107 1.05534 1.19742 1.30491 1.07399 0.84943 0.87901 1.25255 0.97546 0.96277 0.98989 1.69622 1.41978 1.19029 1.23864 0.85814 0.78659 0.79302 0.80648 1.19238 1.20781 1.20819 1.21176 0.94892 0.99687 0.94184 1.21672 0.95551 1.00722 0.97594 1.21535 0.99926 0.99423 0.94798 1.21538 0.95879 1.00621 0.97652 1.21530 0.95565 1.00732 0.97871 1.21616 1.00594 0.99207 0.93780 0.90971 0.93502 0.93367 0.95026 0.91234 0.97034 0.92149 0.88772 0.89591 0.93713 0.77541 0.91991 0.91319 0.92154 0.91704 0.92138 0.92345 0.92473 0.92179 0.92161 0.92358 0.91568 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.73 37.16 0.32 -1.38 16 2 C -0.08 -0.93 1.90 -90.62 -0.17 -1.11 16 3 H 0.07 0.86 6.26 -51.93 -0.33 0.53 16 4 C 0.06 0.74 4.13 -3.83 -0.02 0.73 16 5 N -0.52 -8.74 3.95 -244.37 -0.97 -9.70 16 6 C 0.02 0.36 9.02 60.07 0.54 0.90 16 7 C 0.05 0.85 5.45 -4.97 -0.03 0.82 16 8 C 0.45 10.69 7.51 -10.98 -0.08 10.61 16 9 O -0.58 -15.67 13.89 5.54 0.08 -15.60 16 10 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 12 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 14 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 15 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.08 -0.76 1.78 -90.62 -0.16 -0.92 16 20 C -0.12 -1.07 4.86 -26.73 -0.13 -1.20 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.92 5.92 -26.75 -0.16 -1.08 16 24 C -0.11 -0.99 4.85 -26.75 -0.13 -1.12 16 25 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 26 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.40 6.15 -51.93 -0.32 0.08 16 29 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.89 6.21 -51.92 -0.32 0.57 16 32 H 0.09 1.91 5.88 -51.93 -0.31 1.60 16 33 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -30.00 356.56 -8.84 -38.84 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.40 Total: 7.57 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.57 Total: -3.95 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.30 Total: -48.48 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.00 -8.84 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599633373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.964 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds