Wall clock time and date at job start Tue Mar 31 2020 05:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00320 * 2 1 4 4 N 1.34776 * 119.99779 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00143 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47392 * 180.02562 * 5 4 2 7 7 C 1.53119 * 109.52500 * 174.99911 * 6 5 4 8 8 C 1.53041 * 109.28124 * 177.55841 * 7 6 5 9 9 N 1.46852 * 109.52206 * 300.82320 * 8 7 6 10 10 C 1.46901 * 110.99727 * 185.83329 * 9 8 7 11 11 C 1.53004 * 109.46498 * 75.77290 * 10 9 8 12 12 H 1.08996 * 109.47563 * 305.05866 * 11 10 9 13 13 C 1.53002 * 109.47337 * 65.06619 * 11 10 9 14 14 C 1.53004 * 109.46588 * 185.06117 * 11 10 9 15 15 C 1.50700 * 109.46825 * 175.00079 * 14 11 10 16 16 H 1.07998 * 120.00065 * 0.02562 * 15 14 11 17 17 C 1.37876 * 119.99692 * 180.02562 * 15 14 11 18 18 N 1.31510 * 120.00660 * 359.72694 * 17 15 14 19 19 Si 1.86810 * 119.99870 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47180 * 179.72399 * 19 17 15 21 21 H 1.48501 * 109.46964 * 299.72923 * 19 17 15 22 22 H 1.48506 * 109.46597 * 59.72626 * 19 17 15 23 23 C 1.46847 * 111.19705 * 61.74105 * 9 8 7 24 24 C 1.53040 * 109.52293 * 298.25592 * 23 9 8 25 25 H 1.08997 * 109.47709 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47369 * 300.00246 * 1 2 3 27 27 H 1.09000 * 109.46894 * 60.00023 * 1 2 3 28 28 H 0.96999 * 120.00102 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.47094 * 60.00410 * 5 4 2 30 30 H 1.09002 * 109.47258 * 299.99848 * 5 4 2 31 31 H 1.08999 * 109.52307 * 54.87205 * 6 5 4 32 32 H 1.09000 * 109.50031 * 57.61911 * 7 6 5 33 33 H 1.08997 * 109.53696 * 297.52088 * 7 6 5 34 34 H 1.08994 * 109.46441 * 180.80500 * 8 7 6 35 35 H 1.08997 * 109.44839 * 60.83291 * 8 7 6 36 36 H 1.08993 * 109.47665 * 315.77332 * 10 9 8 37 37 H 1.08998 * 109.46944 * 195.76980 * 10 9 8 38 38 H 1.08990 * 109.47324 * 185.00705 * 13 11 10 39 39 H 1.08998 * 109.46672 * 305.00518 * 13 11 10 40 40 H 1.08997 * 109.47233 * 65.00119 * 13 11 10 41 41 H 1.08998 * 109.46947 * 54.99903 * 14 11 10 42 42 H 1.09005 * 109.47084 * 295.00095 * 14 11 10 43 43 H 0.97004 * 119.99611 * 0.27178 * 18 17 15 44 44 H 1.09000 * 109.46217 * 58.27246 * 23 9 8 45 45 H 1.09003 * 109.46618 * 178.24216 * 23 9 8 46 46 H 1.09001 * 109.50062 * 299.23785 * 24 23 9 47 47 H 1.09001 * 109.50175 * 179.12234 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1557 -2.6098 0.0001 7 6 5.6817 -2.6131 -0.1263 8 6 6.1908 -4.0551 -0.0644 9 7 5.7858 -4.6642 1.2090 10 6 6.3739 -6.0014 1.3635 11 6 7.8542 -5.8686 1.7268 12 1 8.3580 -5.2549 0.9800 13 6 7.9849 -5.2092 3.1013 14 6 8.4967 -7.2567 1.7639 15 6 9.9786 -7.1181 2.0003 16 1 10.4181 -6.1380 2.1133 17 6 10.7733 -8.2425 2.0725 18 7 10.2374 -9.4361 1.9403 19 14 12.6103 -8.0707 2.3649 20 1 13.2330 -9.4181 2.4070 21 1 13.2151 -7.2800 1.2629 22 1 12.8430 -7.3771 3.6573 23 6 4.3234 -4.7151 1.3319 24 6 3.7586 -3.2928 1.3117 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6958 -2.0072 0.0005 29 1 4.0095 -0.6530 0.8895 30 1 4.0088 -0.6541 -0.8905 31 1 3.7195 -3.1505 -0.8398 32 1 6.1158 -2.0385 0.6919 33 1 5.9696 -2.1662 -1.0778 34 1 7.2781 -4.0599 -0.1397 35 1 5.7669 -4.6254 -0.8908 36 1 6.2775 -6.5511 0.4273 37 1 5.8522 -6.5385 2.1555 38 1 9.0378 -5.0336 3.3214 39 1 7.4504 -4.2593 3.1007 40 1 7.5594 -5.8651 3.8608 41 1 8.3261 -7.7615 0.8130 42 1 8.0532 -7.8409 2.5702 43 1 9.2835 -9.5253 1.7881 44 1 3.9084 -5.2825 0.4989 45 1 4.0544 -5.1993 2.2707 46 1 4.1625 -2.7290 2.1525 47 1 2.6719 -3.3317 1.3872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:06 Heat of formation + Delta-G solvation = -72.350027 kcal Electronic energy + Delta-G solvation = -22442.023953 eV Core-core repulsion = 19237.052505 eV Total energy + Delta-G solvation = -3204.971448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09410 -39.09330 -36.41324 -34.82017 -33.12563 -31.80813 -30.91505 -30.21529 -27.31217 -26.36703 -24.86411 -23.32199 -22.83924 -21.64599 -20.93046 -19.77758 -19.06766 -17.20381 -16.77218 -16.41805 -15.92541 -15.49263 -15.01714 -14.59189 -14.48864 -14.00703 -13.78932 -13.73061 -13.48043 -13.19295 -12.95695 -12.87635 -12.79754 -12.32261 -12.19338 -11.71664 -11.68305 -11.30929 -11.24402 -11.01939 -10.94535 -10.73598 -10.58294 -10.46941 -10.23647 -10.13777 -10.07461 -9.68026 -9.39546 -9.38572 -8.46434 -8.28072 -8.07211 -6.30794 -3.98586 2.32866 2.91585 3.46242 3.48224 3.66684 4.02987 4.39574 4.51877 4.52519 4.58833 4.65432 4.77562 4.99876 5.10077 5.14377 5.25085 5.34564 5.39390 5.43293 5.45226 5.49890 5.54814 5.63582 5.67719 5.77152 5.80665 5.96496 6.01658 6.02036 6.08413 6.10840 6.25509 6.30665 6.46514 6.63865 6.91566 7.08076 7.13349 7.15911 7.31638 7.34462 7.45320 7.62590 7.89637 8.29387 8.52466 8.94567 9.72702 11.09567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046391 B = 0.002576 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.416267 B =10865.511263 C =11107.286198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.550 6.550 4 N -0.729 5.729 5 C 0.123 3.877 6 C -0.099 4.099 7 C -0.107 4.107 8 C 0.056 3.944 9 N -0.533 5.533 10 C 0.060 3.940 11 C -0.071 4.071 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.013 3.987 15 C -0.592 4.592 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.055 3.945 24 C -0.109 4.109 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.400 0.600 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.002 0.998 42 H 0.006 0.994 43 H 0.267 0.733 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.650 14.292 -4.424 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.428 6.428 4 N -0.381 5.381 5 C -0.001 4.001 6 C -0.118 4.118 7 C -0.146 4.146 8 C -0.072 4.072 9 N -0.258 5.258 10 C -0.067 4.067 11 C -0.090 4.090 12 H 0.074 0.926 13 C -0.178 4.178 14 C -0.024 4.024 15 C -0.630 4.630 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.073 4.073 24 C -0.147 4.147 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.024 0.976 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.629 14.480 -3.860 23.138 hybrid contribution -2.002 -0.188 -0.876 2.193 sum -19.632 14.293 -4.736 24.741 Atomic orbital electron populations 1.21849 0.91777 1.04166 1.05303 1.20824 0.90620 0.83527 0.75606 1.90736 1.70813 1.31472 1.49736 1.46192 1.07788 1.08691 1.75465 1.21451 0.79206 0.96919 1.02507 1.21461 0.97205 0.94463 0.98702 1.21554 0.93376 0.97253 1.02380 1.22086 1.01308 0.93995 0.89842 1.61935 1.07762 1.22747 1.33348 1.22316 0.97415 0.87486 0.99477 1.21032 0.91475 0.99213 0.97234 0.92557 1.21553 1.00992 0.98961 0.96306 1.19270 0.96317 0.91247 0.95579 1.22025 0.92794 0.94856 1.53327 0.93241 1.25824 1.06325 0.92635 0.94376 1.70784 1.14568 1.23860 1.46097 0.83573 0.74769 0.75676 0.76436 1.20887 1.21530 1.21475 1.22068 0.88485 0.96107 1.00652 1.21645 0.99379 0.96159 0.97523 0.90629 0.88739 0.88802 0.76507 0.91180 0.91488 0.90949 0.90603 0.91430 0.89939 0.95347 0.95314 0.91592 0.92947 0.93594 0.94409 0.97994 0.97604 0.92242 0.95460 0.90849 0.90734 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.39 36.00 0.37 -0.46 16 2 C 0.51 4.63 7.94 -10.99 -0.09 4.54 16 3 O -0.55 -7.71 17.10 5.56 0.10 -7.62 16 4 N -0.73 -5.38 5.31 -60.30 -0.32 -5.70 16 5 C 0.12 1.08 5.07 -4.04 -0.02 1.06 16 6 C -0.10 -0.84 2.29 -90.50 -0.21 -1.05 16 7 C -0.11 -1.09 5.38 -26.65 -0.14 -1.23 16 8 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 9 N -0.53 -7.44 3.96 -234.66 -0.93 -8.37 16 10 C 0.06 1.02 4.39 -3.82 -0.02 1.00 16 11 C -0.07 -1.44 2.39 -90.61 -0.22 -1.66 16 12 H 0.06 1.19 6.70 -51.93 -0.35 0.84 16 13 C -0.12 -2.37 8.87 37.16 0.33 -2.04 16 14 C 0.01 0.34 3.76 -27.88 -0.10 0.24 16 15 C -0.59 -16.81 8.47 -34.44 -0.29 -17.10 16 16 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 17 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -28.33 13.65 55.43 0.76 -27.58 16 19 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.06 0.62 5.43 -3.83 -0.02 0.60 16 24 C -0.11 -0.97 5.22 -26.65 -0.14 -1.11 16 25 H 0.07 0.19 7.91 -51.93 -0.41 -0.23 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.40 1.91 7.53 -40.82 -0.31 1.61 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.19 6.65 -51.93 -0.35 0.84 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 37 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 38 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 39 H 0.05 0.81 7.62 -51.93 -0.40 0.41 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 42 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 43 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 44 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.42 7.27 -51.93 -0.38 0.04 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -33.50 365.95 -9.36 -42.86 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.73 Total: -3.33 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.66 Total: -16.29 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.49 Total: -41.65 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.10 Total: -7.62 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.50 -9.36 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.490 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds