Wall clock time and date at job start Tue Mar 31 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99950 * 2 1 3 5 5 C 1.50707 * 109.47006 * 65.00320 * 4 2 1 6 6 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99911 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47117 * 60.00593 * 9 7 5 11 11 H 1.48501 * 109.46906 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47310 * 300.00134 * 9 7 5 13 13 C 1.53000 * 109.46913 * 120.00378 * 2 1 3 14 14 N 1.46906 * 109.47072 * 294.99925 * 13 2 1 15 15 C 1.46853 * 110.99832 * 294.21261 * 14 13 2 16 16 C 1.53033 * 109.52262 * 174.16246 * 15 14 13 17 17 C 1.53112 * 109.27992 * 59.17361 * 16 15 14 18 18 C 1.53004 * 109.52428 * 182.43862 * 17 16 15 19 19 C 1.52995 * 109.47392 * 294.69065 * 18 17 16 20 20 C 1.50701 * 109.47156 * 180.02562 * 19 18 17 21 21 N 1.34782 * 119.99825 * 179.97438 * 20 19 18 22 22 O 1.21281 * 120.00137 * 359.97438 * 20 19 18 23 23 C 1.53120 * 109.16707 * 302.34582 * 17 16 15 24 24 C 1.46844 * 110.99887 * 170.00138 * 14 13 2 25 25 H 1.09000 * 109.46871 * 59.99540 * 1 2 3 26 26 H 1.08999 * 109.47528 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47281 * 300.00077 * 1 2 3 28 28 H 1.09002 * 109.46907 * 185.00172 * 4 2 1 29 29 H 1.09002 * 109.47546 * 305.00329 * 4 2 1 30 30 H 0.96993 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47007 * 174.99975 * 13 2 1 32 32 H 1.08996 * 109.47340 * 54.99781 * 13 2 1 33 33 H 1.09001 * 109.46125 * 294.17808 * 15 14 13 34 34 H 1.09003 * 109.46462 * 54.14202 * 15 14 13 35 35 H 1.09007 * 109.50330 * 299.23709 * 16 15 14 36 36 H 1.08999 * 109.53502 * 179.13924 * 16 15 14 37 37 H 1.08999 * 109.57341 * 62.28839 * 17 16 15 38 38 H 1.09001 * 109.46712 * 54.68506 * 18 17 16 39 39 H 1.08997 * 109.47369 * 174.68461 * 18 17 16 40 40 H 1.09009 * 109.47023 * 299.99496 * 19 18 17 41 41 H 1.08997 * 109.47357 * 59.99388 * 19 18 17 42 42 H 0.97002 * 119.99812 * 359.97438 * 21 20 19 43 43 H 0.96995 * 119.99853 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.49890 * 297.71825 * 23 17 16 45 45 H 1.08989 * 109.54077 * 177.61187 * 23 17 16 46 46 H 1.09000 * 109.46299 * 305.85220 * 24 14 13 47 47 H 1.08998 * 109.46010 * 65.83553 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0808 0.9747 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 2.0897 1.9236 -5.1870 11 1 1.9936 -0.1371 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.3292 1.3394 2.4864 16 6 1.7932 2.1584 3.6627 17 6 2.0394 1.3928 4.9656 18 6 1.4514 2.1787 6.1394 19 6 2.2116 3.4963 6.3030 20 6 1.6328 4.2699 7.4595 21 7 2.1480 5.4700 7.7926 22 8 0.7034 3.8127 8.0905 23 6 1.3638 0.0215 4.8783 24 6 1.9123 -0.7356 3.6666 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 2.9243 -1.8412 -4.7317 31 1 3.1262 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 3.4016 1.1869 2.6087 34 1 2.1426 1.8753 1.5557 35 1 0.7234 2.3231 3.5340 36 1 2.3071 3.1189 3.7023 37 1 3.1111 1.2620 5.1154 38 1 0.3993 2.3879 5.9458 39 1 1.5428 1.5906 7.0526 40 1 3.2638 3.2871 6.4966 41 1 2.1201 4.0843 5.3898 42 1 2.8916 5.8355 7.2882 43 1 1.7752 5.9681 8.5367 44 1 0.2873 0.1527 4.7686 45 1 1.5708 -0.5453 5.7858 46 1 1.4228 -1.7068 3.5933 47 1 2.9866 -0.8782 3.7835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:51 Heat of formation + Delta-G solvation = -78.314254 kcal Electronic energy + Delta-G solvation = -22436.971034 eV Core-core repulsion = 19231.740958 eV Total energy + Delta-G solvation = -3205.230076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.94655 -39.04490 -36.15984 -34.11424 -33.94313 -32.17153 -30.75504 -30.51549 -26.99893 -26.28444 -24.51370 -23.21808 -22.61858 -21.41769 -20.40943 -19.65392 -18.74063 -17.63673 -16.99357 -16.38675 -15.91408 -15.48469 -14.84500 -14.48750 -14.42664 -14.24582 -14.10918 -13.72039 -13.51184 -12.91081 -12.77733 -12.55062 -12.08449 -12.03264 -11.92037 -11.39248 -11.37332 -11.13770 -11.08706 -10.82636 -10.76005 -10.61466 -10.37983 -10.34067 -10.25448 -10.14006 -10.08055 -10.03862 -9.51129 -9.08443 -8.91619 -8.30078 -7.92165 -5.95234 -3.96195 2.33801 3.20327 3.35616 3.39953 3.42467 4.20601 4.49077 4.50181 4.56301 4.68402 4.88316 5.00670 5.13933 5.24305 5.36811 5.40387 5.47333 5.49961 5.62754 5.67418 5.72799 5.77070 5.92021 5.95338 6.01181 6.04473 6.14979 6.19923 6.22561 6.26274 6.40491 6.44977 6.46497 6.61842 6.75978 6.95713 7.07003 7.20859 7.25908 7.49316 7.52257 7.72546 7.89272 7.93268 8.05378 8.49610 9.10072 9.66885 11.16314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.002756 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.303327 B =10156.160891 C =10720.333925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.052 3.948 16 C -0.112 4.112 17 C -0.088 4.088 18 C -0.097 4.097 19 C -0.144 4.144 20 C 0.515 3.485 21 N -0.861 5.861 22 O -0.544 6.544 23 C -0.109 4.109 24 C 0.055 3.945 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 10.248 21.755 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.076 4.076 16 C -0.149 4.149 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.184 4.184 20 C 0.300 3.700 21 N -0.424 5.424 22 O -0.421 6.421 23 C -0.147 4.147 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.230 0.770 43 H 0.229 0.771 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.710 9.741 21.882 23.963 hybrid contribution 1.033 0.742 -0.869 1.541 sum 1.743 10.483 21.013 23.547 Atomic orbital electron populations 1.21572 0.95782 1.00474 1.00088 1.21221 0.95941 0.98993 0.93763 0.92635 1.19127 0.95838 0.95580 0.90518 1.21201 1.34543 1.08238 0.90996 0.92655 1.25023 0.95380 0.95109 0.99067 1.69958 1.39106 1.21236 1.23433 0.86697 0.78916 0.80078 0.82531 1.20345 1.21403 1.20271 1.22297 0.97445 0.97205 0.89660 1.61955 1.58367 1.03598 1.01916 1.22119 0.95207 0.91089 0.99144 1.21698 1.02159 0.97521 0.93547 1.21239 0.99650 0.95342 0.94481 1.21382 0.99996 0.93701 0.98452 1.21774 1.01571 0.98046 0.97015 1.20903 0.82590 0.81224 0.85251 1.43961 1.39033 1.21799 1.37651 1.90753 1.28650 1.68767 1.53900 1.21600 1.01138 0.94989 0.96948 1.22054 0.98084 0.96968 0.90208 0.92903 0.94273 0.93903 0.97031 0.96624 0.93080 0.95543 0.91406 0.95530 0.89950 0.91010 0.91973 0.91628 0.91005 0.91385 0.88911 0.88421 0.77048 0.77084 0.91004 0.91954 0.91025 0.95542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.65 2.26 -90.62 -0.20 -1.86 16 3 H 0.06 1.15 6.22 -51.93 -0.32 0.83 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.07 4.35 -3.82 -0.02 1.06 16 14 N -0.53 -7.92 4.11 -234.66 -0.96 -8.88 16 15 C 0.05 0.70 5.30 -3.83 -0.02 0.68 16 16 C -0.11 -1.17 5.08 -26.66 -0.14 -1.31 16 17 C -0.09 -0.84 2.25 -90.50 -0.20 -1.04 16 18 C -0.10 -0.88 3.97 -26.73 -0.11 -0.98 16 19 C -0.14 -0.99 5.46 -27.88 -0.15 -1.14 16 20 C 0.51 4.47 8.10 -10.98 -0.09 4.38 16 21 N -0.86 -4.20 8.87 31.22 0.28 -3.93 16 22 O -0.54 -7.27 16.82 5.56 0.09 -7.17 16 23 C -0.11 -1.16 5.38 -26.65 -0.14 -1.30 16 24 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 25 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.22 6.12 -51.93 -0.32 0.91 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.10 0.56 6.63 -51.93 -0.34 0.21 16 42 H 0.40 0.77 8.83 -40.82 -0.36 0.41 16 43 H 0.40 1.70 8.93 -40.82 -0.36 1.34 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.59 8.14 -51.94 -0.42 0.16 16 46 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -33.05 364.01 -9.31 -42.36 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.65 Total: -2.72 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.27 Total: -15.52 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.05 Total: -39.19 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.09 Total: -7.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.05 -9.31 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.952 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds