Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 C 1.53004 * 109.46872 * 119.99828 * 2 1 3 5 5 C 1.50700 * 109.46825 * 294.99862 * 4 2 1 6 6 H 1.07998 * 120.00065 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99692 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00660 * 359.72694 * 7 5 4 9 9 Si 1.86810 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47392 * 269.72706 * 9 7 5 11 11 H 1.48504 * 109.46891 * 29.72676 * 9 7 5 12 12 H 1.48503 * 109.47096 * 149.72377 * 9 7 5 13 13 C 1.53004 * 109.47337 * 239.99153 * 2 1 3 14 14 N 1.46901 * 109.46498 * 65.06619 * 13 2 1 15 15 C 1.46847 * 110.99825 * 199.97822 * 14 13 2 16 16 C 1.53040 * 109.52293 * 174.16423 * 15 14 13 17 17 C 1.53119 * 109.27945 * 59.18178 * 16 15 14 18 18 C 1.53000 * 109.52313 * 182.43911 * 17 16 15 19 19 C 1.52997 * 109.47357 * 294.68205 * 18 17 16 20 20 C 1.50698 * 109.47404 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00141 * 180.02562 * 20 19 18 22 22 O 1.21283 * 119.99483 * 0.02562 * 20 19 18 23 23 C 1.53119 * 109.16052 * 302.34676 * 17 16 15 24 24 C 1.46852 * 110.99727 * 75.77290 * 14 13 2 25 25 H 1.08997 * 109.47233 * 185.00966 * 1 2 3 26 26 H 1.08990 * 109.47324 * 305.01552 * 1 2 3 27 27 H 1.08998 * 109.46672 * 65.01365 * 1 2 3 28 28 H 1.08998 * 109.46947 * 174.99686 * 4 2 1 29 29 H 1.09005 * 109.47084 * 54.99878 * 4 2 1 30 30 H 0.97004 * 119.99611 * 0.27178 * 8 7 5 31 31 H 1.08993 * 109.47128 * 185.06906 * 13 2 1 32 32 H 1.08998 * 109.47270 * 305.07129 * 13 2 1 33 33 H 1.09000 * 109.46217 * 294.18078 * 15 14 13 34 34 H 1.09003 * 109.46618 * 54.15048 * 15 14 13 35 35 H 1.09001 * 109.50062 * 299.23785 * 16 15 14 36 36 H 1.09001 * 109.50175 * 179.12234 * 16 15 14 37 37 H 1.08999 * 109.57317 * 62.28097 * 17 16 15 38 38 H 1.09004 * 109.46791 * 54.68260 * 18 17 16 39 39 H 1.09002 * 109.46670 * 174.68276 * 18 17 16 40 40 H 1.09000 * 109.47074 * 300.00547 * 19 18 17 41 41 H 1.09003 * 109.46845 * 59.99949 * 19 18 17 42 42 H 0.97003 * 120.00104 * 0.02562 * 21 20 19 43 43 H 0.97004 * 120.00138 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.50031 * 297.71261 * 23 17 16 45 45 H 1.08997 * 109.53696 * 177.61438 * 23 17 16 46 46 H 1.08994 * 109.46405 * 305.85170 * 24 14 13 47 47 H 1.08997 * 109.46514 * 65.83383 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4995 0.5637 5.2496 10 1 2.5680 1.5388 5.5855 11 1 0.2317 1.2904 4.9850 12 1 1.3063 -0.3706 6.3876 13 6 2.0401 -0.7214 -1.2491 14 7 1.6528 0.0380 -2.4455 15 6 1.6892 -0.8116 -3.6427 16 6 1.1428 -0.0312 -4.8404 17 6 1.9928 1.2240 -5.0564 18 6 1.4149 2.0398 -6.2146 19 6 1.5450 1.2434 -7.5144 20 6 0.9752 2.0467 -8.6550 21 7 0.9813 1.5413 -9.9043 22 8 0.5112 3.1481 -8.4486 23 6 1.9775 2.0674 -3.7785 24 6 2.4997 1.2262 -2.6116 25 1 -0.3633 -1.0237 0.0897 26 1 -0.3633 0.5896 0.8416 27 1 -0.3632 0.4341 -0.9315 28 1 3.1263 -0.7995 1.2056 29 1 1.6053 -1.7198 1.2952 30 1 2.9286 -2.0221 3.0616 31 1 3.1262 -0.8007 -1.2049 32 1 1.6045 -1.7195 -1.2956 33 1 2.7175 -1.1121 -3.8436 34 1 1.0775 -1.6985 -3.4775 35 1 0.1099 0.2578 -4.6459 36 1 1.1845 -0.6568 -5.7321 37 1 3.0176 0.9352 -5.2900 38 1 0.3630 2.2504 -6.0212 39 1 1.9623 2.9779 -6.3068 40 1 2.5968 1.0327 -7.7076 41 1 0.9976 0.3053 -7.4220 42 1 1.3521 0.6602 -10.0693 43 1 0.6142 2.0582 -10.6385 44 1 0.9577 2.3894 -3.5673 45 1 2.6150 2.9414 -3.9110 46 1 2.4766 1.8193 -1.6974 47 1 3.5241 0.9161 -2.8176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -82.794500 kcal Electronic energy + Delta-G solvation = -22406.979635 eV Core-core repulsion = 19201.555281 eV Total energy + Delta-G solvation = -3205.424354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.98888 -39.09036 -36.24666 -34.26837 -34.01503 -32.24463 -30.99766 -30.37569 -26.70876 -26.24966 -24.52598 -23.15173 -22.66736 -21.50466 -20.48217 -19.70679 -19.01635 -17.67851 -17.03751 -16.72486 -15.94936 -15.51259 -14.94503 -14.51738 -14.41873 -14.20022 -13.87873 -13.69374 -13.45890 -13.29639 -12.87919 -12.66093 -12.19929 -12.12109 -11.69234 -11.63122 -11.30138 -11.17969 -11.15112 -10.95922 -10.74461 -10.60355 -10.44148 -10.27974 -10.22552 -10.10936 -10.08463 -10.04747 -9.62633 -9.35077 -8.43175 -8.25337 -7.99004 -6.28457 -3.95963 2.29859 3.15958 3.47422 3.51330 3.66912 4.12703 4.44426 4.51939 4.60262 4.62722 4.83131 4.93356 5.08470 5.19072 5.31332 5.39873 5.43217 5.48028 5.57132 5.60455 5.62733 5.76419 5.84605 5.87856 5.91089 6.04215 6.07967 6.12167 6.16573 6.19994 6.35467 6.36509 6.40341 6.52394 6.68830 6.91565 6.96187 7.13075 7.17408 7.39474 7.41539 7.49774 7.66493 7.89438 8.32538 8.55654 8.97372 9.75312 11.12006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045346 B = 0.002557 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.322505 B =10946.596352 C =11198.442052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.013 3.987 5 C -0.591 4.591 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.098 4.098 19 C -0.143 4.143 20 C 0.514 3.486 21 N -0.861 5.861 22 O -0.543 6.543 23 C -0.110 4.110 24 C 0.055 3.945 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.002 0.998 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 2.506 -26.584 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.629 4.629 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.149 4.149 17 C -0.107 4.107 18 C -0.136 4.136 19 C -0.183 4.183 20 C 0.300 3.700 21 N -0.425 5.425 22 O -0.419 6.419 23 C -0.147 4.147 24 C -0.073 4.073 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.229 0.771 43 H 0.229 0.771 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.610 3.362 -24.530 24.812 hybrid contribution 0.899 -0.669 -2.261 2.523 sum -0.711 2.693 -26.791 26.935 Atomic orbital electron populations 1.21551 0.95641 1.00468 1.00135 1.21030 0.96016 0.98945 0.92970 0.92571 1.19274 0.95040 0.95585 0.92537 1.22059 1.38393 1.10226 0.92232 0.93194 1.25823 0.94823 0.97168 1.01385 1.70751 1.36496 1.14744 1.33454 0.83537 0.75981 0.75233 0.75408 1.21589 1.21494 1.21116 1.22309 0.97503 0.96905 0.89985 1.61929 1.53798 1.07568 1.02486 1.22074 0.98861 0.95834 0.90557 1.21693 1.00395 0.96005 0.96801 1.21235 0.99173 0.95574 0.94698 1.21388 1.02649 0.98105 0.91451 1.21767 1.02581 1.00142 0.93842 1.20894 0.78001 0.86738 0.84400 1.43959 1.65833 1.22812 1.09855 1.90761 1.45972 1.20955 1.84222 1.21614 1.02358 0.97375 0.93400 1.22100 0.93674 0.92543 0.98979 0.94432 0.92978 0.93570 0.98004 0.97606 0.92209 0.95396 0.91663 0.95576 0.91061 0.90962 0.92011 0.91624 0.90971 0.91259 0.88918 0.88557 0.77091 0.77057 0.90929 0.91781 0.90219 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.87 37.16 0.33 -2.10 16 2 C -0.07 -1.48 2.39 -90.61 -0.22 -1.70 16 3 H 0.06 1.22 6.70 -51.93 -0.35 0.87 16 4 C 0.01 0.34 3.76 -27.88 -0.10 0.23 16 5 C -0.59 -16.98 8.47 -34.44 -0.29 -17.28 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.60 13.65 55.43 0.76 -27.85 16 9 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.06 1.06 4.39 -3.82 -0.02 1.04 16 14 N -0.53 -7.89 3.96 -234.66 -0.93 -8.81 16 15 C 0.05 0.66 5.43 -3.83 -0.02 0.64 16 16 C -0.11 -1.07 5.08 -26.65 -0.14 -1.20 16 17 C -0.09 -0.82 2.25 -90.50 -0.20 -1.03 16 18 C -0.10 -0.87 3.97 -26.73 -0.11 -0.98 16 19 C -0.14 -0.92 5.46 -27.89 -0.15 -1.07 16 20 C 0.51 4.30 8.10 -10.99 -0.09 4.21 16 21 N -0.86 -3.85 8.87 31.22 0.28 -3.57 16 22 O -0.54 -7.16 16.82 5.56 0.09 -7.07 16 23 C -0.11 -1.24 5.38 -26.65 -0.14 -1.38 16 24 C 0.06 0.76 5.29 -3.83 -0.02 0.74 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.12 7.10 -51.93 -0.37 0.75 16 27 H 0.05 0.84 7.62 -51.93 -0.40 0.44 16 28 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 29 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 30 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 31 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 32 H 0.06 1.14 7.79 -51.93 -0.40 0.73 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.48 6.64 -51.93 -0.34 0.14 16 42 H 0.40 0.56 8.83 -40.82 -0.36 0.20 16 43 H 0.40 1.57 8.93 -40.82 -0.36 1.20 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.22 6.65 -51.93 -0.35 0.87 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -34.16 363.35 -9.30 -43.46 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -8.62 Total: -2.80 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.27 Total: -19.65 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.10 Total: -40.24 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.16 -9.30 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.334 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds