Wall clock time and date at job start Tue Mar 31 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47003 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00540 * 2 1 3 5 5 C 1.50700 * 109.46991 * 65.00072 * 4 2 1 6 6 H 1.07994 * 120.00568 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99766 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47183 * 89.99894 * 9 7 5 11 11 H 1.48498 * 109.46886 * 210.00086 * 9 7 5 12 12 H 1.48503 * 109.46750 * 329.99627 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00880 * 2 1 3 14 14 N 1.46906 * 109.46807 * 294.99531 * 13 2 1 15 15 C 1.46901 * 110.99793 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.46769 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.46927 * 120.62638 * 359.71455 * 19 17 16 21 21 C 1.53627 * 108.54183 * 126.37295 * 20 19 17 22 22 C 1.53040 * 109.24108 * 54.85576 * 21 20 19 23 23 C 1.53042 * 109.53871 * 298.50936 * 22 21 20 24 24 C 1.46920 * 120.63268 * 180.02562 * 19 17 16 25 25 H 1.09002 * 109.47571 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46810 * 299.99567 * 1 2 3 27 27 H 1.08998 * 109.47728 * 59.99309 * 1 2 3 28 28 H 1.09001 * 109.47031 * 184.99671 * 4 2 1 29 29 H 1.09005 * 109.47230 * 304.99874 * 4 2 1 30 30 H 0.97005 * 119.99410 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47206 * 175.00237 * 13 2 1 32 32 H 1.08995 * 109.47212 * 54.99351 * 13 2 1 33 33 H 1.00899 * 110.99995 * 303.95597 * 14 13 2 34 34 H 1.09001 * 109.46874 * 60.00179 * 15 14 13 35 35 H 1.08992 * 109.47407 * 300.00197 * 15 14 13 36 36 H 1.09002 * 109.47398 * 300.00295 * 16 15 14 37 37 H 1.09001 * 109.47194 * 60.00475 * 16 15 14 38 38 H 1.09005 * 109.58858 * 246.20434 * 20 19 17 39 39 H 1.08995 * 109.58867 * 6.63230 * 20 19 17 40 40 H 1.08999 * 109.63425 * 294.86802 * 21 20 19 41 41 H 1.08997 * 109.46146 * 174.73964 * 21 20 19 42 42 H 1.08995 * 109.46070 * 178.49571 * 22 21 20 43 43 H 1.08999 * 109.46244 * 58.53099 * 22 21 20 44 44 H 1.09000 * 109.50220 * 301.42045 * 23 22 21 45 45 H 1.09000 * 109.50009 * 181.31223 * 23 22 21 46 46 H 1.09001 * 109.58920 * 353.36599 * 24 19 17 47 47 H 1.08997 * 109.58981 * 113.79581 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6411 0.0573 -2.4766 6 1 1.0799 0.9744 -2.3757 7 6 1.9930 -0.4014 -3.7284 8 7 2.6761 -1.5185 -3.8513 9 14 1.4982 0.5631 -5.2497 10 1 2.5628 1.5435 -5.5823 11 1 1.3119 -0.3709 -6.3890 12 1 0.2264 1.2834 -4.9871 13 6 2.0400 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1249 -0.6275 3.6671 16 6 1.7026 0.1905 4.8892 17 6 2.1888 -0.4911 6.1422 18 8 2.8112 -1.5291 6.0654 19 7 1.9310 0.0524 7.3483 20 6 1.1826 1.3121 7.4572 21 6 -0.0027 1.0954 8.4102 22 6 0.5157 0.5553 9.7450 23 6 1.2042 -0.7927 9.5191 24 6 2.3988 -0.6000 8.5788 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.1262 -0.7994 -1.2058 29 1 1.6052 -1.7198 -1.2954 30 1 2.9240 -1.8409 -4.7320 31 1 3.1264 -0.7996 1.2054 32 1 1.6054 -1.7199 1.2949 33 1 1.9882 0.9871 2.3967 34 1 3.2117 -0.7055 3.6404 35 1 1.6905 -1.6252 3.7295 36 1 2.1374 1.1881 4.8265 37 1 0.6158 0.2689 4.9161 38 1 1.8345 2.0915 7.8518 39 1 0.8140 1.6043 6.4740 40 1 -0.6978 0.3786 7.9731 41 1 -0.5139 2.0437 8.5754 42 1 -0.3196 0.4254 10.4332 43 1 1.2295 1.2610 10.1698 44 1 0.4978 -1.4917 9.0713 45 1 1.5526 -1.1878 10.4733 46 1 2.8330 -1.5698 8.3359 47 1 3.1477 0.0270 9.0629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602521893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:49 Heat of formation + Delta-G solvation = -67.903515 kcal Electronic energy + Delta-G solvation = -21957.901468 eV Core-core repulsion = 18753.122835 eV Total energy + Delta-G solvation = -3204.778632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45030 -37.80768 -36.82800 -34.35183 -33.30726 -32.24136 -31.58357 -29.92831 -26.81047 -25.98254 -24.97587 -23.75867 -22.82957 -21.94741 -21.02367 -19.29999 -18.84405 -17.45920 -16.35121 -16.18160 -16.05810 -15.12954 -14.97328 -14.70740 -14.44867 -14.42769 -14.04173 -13.86957 -13.69267 -13.29277 -12.92215 -12.77908 -12.41929 -12.21954 -11.88192 -11.66302 -11.43820 -11.40514 -11.37120 -11.15123 -11.10158 -10.99866 -10.84009 -10.68378 -10.26104 -10.19274 -9.93924 -9.66022 -9.10940 -8.96062 -8.91712 -8.29603 -8.10219 -5.94227 -3.95326 2.44703 2.67483 3.35010 3.41241 3.44572 4.11636 4.30886 4.42199 4.44466 4.51327 4.63905 4.74497 4.84710 4.90538 5.01285 5.08445 5.14948 5.30999 5.35789 5.41346 5.41596 5.46299 5.52143 5.60264 5.66416 5.75678 5.82863 5.87403 6.02518 6.03246 6.20328 6.22391 6.46610 6.59397 6.72131 7.04631 7.09710 7.21610 7.23244 7.38173 7.67412 7.74218 7.89928 7.97454 8.06317 8.50074 9.11153 9.67717 11.17304 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045522 B = 0.002296 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.942098 B =12190.305957 C =12578.782191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.073 3.927 16 C -0.136 4.136 17 C 0.518 3.482 18 O -0.539 6.539 19 N -0.617 5.617 20 C 0.105 3.895 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.135 4.135 24 C 0.110 3.890 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.335 0.665 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 6.514 28.583 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.057 4.057 16 C -0.176 4.176 17 C 0.306 3.694 18 O -0.416 6.416 19 N -0.352 5.352 20 C -0.018 4.018 21 C -0.175 4.175 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.013 4.013 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.210 5.536 28.428 29.266 hybrid contribution 0.720 0.726 -0.856 1.333 sum -3.489 6.262 27.572 28.489 Atomic orbital electron populations 1.21587 0.95745 1.00580 1.00068 1.21199 0.95981 0.98875 0.94045 0.92850 1.19132 0.95956 0.95621 0.90436 1.21238 1.34525 1.08258 0.90986 0.92567 1.25039 0.95414 0.95110 0.99115 1.69975 1.39133 1.21201 1.23338 0.86622 0.78889 0.79780 0.82868 1.20797 1.21329 1.19897 1.22147 0.97335 0.97748 0.89168 1.60542 1.64061 1.05711 1.01659 1.21635 0.98031 0.97991 0.88040 1.21653 1.03507 1.00389 0.92088 1.20811 0.78998 0.84838 0.84738 1.90706 1.40513 1.23652 1.86699 1.48148 1.56211 1.24836 1.05993 1.21877 0.93192 0.85501 1.01225 1.22003 0.97616 1.02023 0.95846 1.21520 1.00333 0.96858 0.97097 1.21927 0.97957 0.97849 0.99602 1.21579 0.95970 0.99371 0.84367 0.94168 0.93985 0.92794 0.96908 0.96519 0.93122 0.95638 0.91460 0.84806 0.94790 0.90476 0.89097 0.88000 0.91254 0.89149 0.91244 0.90567 0.91642 0.91766 0.91444 0.90777 0.88967 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.16 5.07 -3.82 -0.02 1.14 16 14 N -0.69 -10.05 5.96 -113.78 -0.68 -10.73 16 15 C 0.07 0.98 4.97 -3.82 -0.02 0.96 16 16 C -0.14 -1.38 4.31 -27.88 -0.12 -1.50 16 17 C 0.52 6.07 7.70 -10.98 -0.08 5.98 16 18 O -0.54 -8.50 15.39 5.56 0.09 -8.41 16 19 N -0.62 -5.45 2.97 -172.48 -0.51 -5.96 16 20 C 0.11 0.62 6.37 -3.48 -0.02 0.59 16 21 C -0.14 -0.69 6.10 -26.39 -0.16 -0.85 16 22 C -0.12 -0.60 5.88 -26.69 -0.16 -0.75 16 23 C -0.14 -0.83 6.08 -26.59 -0.16 -0.99 16 24 C 0.11 0.88 6.43 -3.69 -0.02 0.85 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.33 4.44 8.73 -39.29 -0.34 4.10 16 34 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.09 0.75 7.93 -51.93 -0.41 0.33 16 37 H 0.10 0.92 7.70 -51.93 -0.40 0.52 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.46 5.93 -51.93 -0.31 0.15 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.92 7.01 -51.93 -0.36 0.55 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -32.71 368.61 -9.86 -42.57 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.86 Total: -1.94 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.17 Total: -11.33 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.45 Total: -43.33 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.71 -9.86 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds