Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47212 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00071 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99664 * 180.02562 * 17 16 15 20 20 C 1.46926 * 120.63299 * 359.71492 * 19 17 16 21 21 C 1.53623 * 108.53811 * 126.37035 * 20 19 17 22 22 C 1.53038 * 109.24318 * 54.85861 * 21 20 19 23 23 C 1.53037 * 109.53827 * 298.50388 * 22 21 20 24 24 C 1.46924 * 120.62458 * 179.97438 * 19 17 16 25 25 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08998 * 109.58455 * 246.20320 * 20 19 17 39 39 H 1.09002 * 109.58807 * 6.63325 * 20 19 17 40 40 H 1.09002 * 109.63732 * 294.86283 * 21 20 19 41 41 H 1.09008 * 109.45608 * 174.73968 * 21 20 19 42 42 H 1.09005 * 109.45667 * 178.48899 * 22 21 20 43 43 H 1.09000 * 109.46210 * 58.53174 * 22 21 20 44 44 H 1.08994 * 109.50044 * 301.41693 * 23 22 21 45 45 H 1.08997 * 109.49817 * 181.31480 * 23 22 21 46 46 H 1.08999 * 109.59034 * 353.37601 * 24 19 17 47 47 H 1.09004 * 109.58314 * 113.79905 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1887 -0.4912 -6.1423 18 8 2.8127 -1.5282 -6.0654 19 7 1.9308 0.0524 -7.3484 20 6 1.1716 1.3056 -7.4579 21 6 1.9908 2.3015 -8.2928 22 6 2.3442 1.6616 -9.6374 23 6 3.1988 0.4141 -9.4016 24 6 2.3986 -0.6001 -8.5788 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 0.6529 0.1791 -2.4753 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 0.2169 1.1128 -7.9471 39 1 0.9986 1.7162 -6.4631 40 1 2.9065 2.5594 -7.7608 41 1 1.4024 3.2033 -8.4626 42 1 2.9026 2.3751 -10.2434 43 1 1.4285 1.3815 -10.1581 44 1 4.1030 0.6898 -8.8591 45 1 3.4696 -0.0279 -10.3604 46 1 3.0352 -1.4473 -8.3239 47 1 1.5419 -0.9453 -9.1578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602521894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = -71.460928 kcal Electronic energy + Delta-G solvation = -21994.960007 eV Core-core repulsion = 18790.027114 eV Total energy + Delta-G solvation = -3204.932893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48354 -37.85507 -37.00644 -34.51729 -33.35015 -32.37451 -31.60018 -29.89507 -26.53039 -26.07454 -25.06466 -23.77775 -22.84318 -21.99803 -21.03923 -19.38236 -18.96036 -17.49983 -16.74280 -16.26293 -16.15662 -15.34589 -14.99305 -14.71103 -14.53789 -14.12805 -13.97899 -13.80353 -13.65971 -13.26458 -13.12553 -12.91983 -12.68910 -12.36937 -11.90115 -11.71164 -11.63106 -11.42591 -11.37961 -11.18312 -11.12547 -11.01798 -10.97717 -10.66079 -10.21067 -10.05228 -9.96285 -9.81310 -9.41487 -8.98920 -8.44102 -8.26425 -8.19908 -6.28666 -3.96683 2.41158 2.64353 3.47274 3.49572 3.68096 4.07598 4.28543 4.40176 4.42045 4.59370 4.62019 4.69884 4.82495 4.86064 4.97648 5.06162 5.10095 5.28674 5.33534 5.39400 5.42232 5.47569 5.49880 5.58405 5.63886 5.68800 5.71906 5.85484 5.89698 5.93530 6.02212 6.19030 6.21283 6.39916 6.49595 6.83801 7.04413 7.05727 7.07257 7.27682 7.47161 7.57895 7.66932 7.93928 8.30567 8.54049 8.96303 9.74862 11.11742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042983 B = 0.002303 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.261691 B =12157.025636 C =12478.546657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.067 0.933 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.073 3.927 16 C -0.137 4.137 17 C 0.518 3.482 18 O -0.539 6.539 19 N -0.617 5.617 20 C 0.105 3.895 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.135 4.135 24 C 0.110 3.890 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.268 0.732 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.336 0.664 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 7.064 -28.800 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.057 4.057 16 C -0.177 4.177 17 C 0.306 3.694 18 O -0.416 6.416 19 N -0.352 5.352 20 C -0.018 4.018 21 C -0.175 4.175 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.013 4.013 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.970 6.923 -27.053 28.082 hybrid contribution -0.754 -0.663 -1.891 2.141 sum -3.723 6.260 -28.944 29.847 Atomic orbital electron populations 1.21733 0.96493 1.00437 1.00397 1.21085 0.94988 1.00000 0.93522 0.91485 1.19247 0.95411 0.95443 0.92271 1.22026 1.38630 1.10246 0.92269 0.93219 1.25833 0.94787 0.97181 1.01397 1.70775 1.36256 1.14696 1.33512 0.83561 0.75978 0.75158 0.75658 1.20885 1.21494 1.21546 1.22138 1.00429 0.94467 0.89390 1.60565 1.19378 1.50779 1.01559 1.21642 1.01468 0.94716 0.87908 1.21652 1.02547 1.01446 0.92035 1.20784 0.79049 0.84820 0.84702 1.90704 1.40427 1.23757 1.86691 1.48147 1.55952 1.25046 1.06012 1.21881 0.94332 0.83844 1.01753 1.22005 1.00955 0.98131 0.96406 1.21520 1.00093 0.97177 0.97015 1.21912 0.98988 0.96199 1.00245 1.21567 0.98740 0.96166 0.84809 0.94818 0.94110 0.91726 0.97562 0.97662 0.92160 0.91453 0.95756 0.84545 0.90414 0.94781 0.89105 0.87939 0.91228 0.89174 0.91237 0.90542 0.91615 0.91756 0.91442 0.90745 0.88968 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.61 2.55 -90.62 -0.23 -1.84 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -17.02 8.41 -34.44 -0.29 -17.31 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 9 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.16 5.14 -3.82 -0.02 1.15 16 14 N -0.69 -10.31 6.50 -113.78 -0.74 -11.05 16 15 C 0.07 0.99 4.97 -3.82 -0.02 0.97 16 16 C -0.14 -1.40 4.31 -27.88 -0.12 -1.52 16 17 C 0.52 6.08 7.70 -10.98 -0.08 6.00 16 18 O -0.54 -8.49 15.39 5.56 0.09 -8.41 16 19 N -0.62 -5.45 2.97 -172.52 -0.51 -5.96 16 20 C 0.10 0.62 6.37 -3.49 -0.02 0.59 16 21 C -0.14 -0.69 6.10 -26.39 -0.16 -0.86 16 22 C -0.12 -0.60 5.88 -26.69 -0.16 -0.75 16 23 C -0.14 -0.83 6.08 -26.63 -0.16 -0.99 16 24 C 0.11 0.87 6.43 -3.73 -0.02 0.85 16 25 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 28 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 29 H 0.01 0.14 8.00 -51.93 -0.42 -0.28 16 30 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.34 4.56 6.98 -39.29 -0.27 4.28 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.09 0.75 7.93 -51.92 -0.41 0.34 16 37 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.46 5.93 -51.93 -0.31 0.16 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.91 7.01 -51.93 -0.36 0.55 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -33.42 365.04 -9.83 -43.25 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.67 Total: -0.65 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.17 Total: -15.42 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.49 Total: -44.92 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.42 -9.83 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.211 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds