Wall clock time and date at job start Tue Mar 31 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47351 * 2 1 4 4 C 1.52994 * 109.47034 * 239.99464 * 2 1 3 5 5 C 1.50701 * 109.47338 * 65.00034 * 4 2 1 6 6 H 1.08001 * 119.99284 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00245 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99936 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99720 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47218 * 90.00554 * 9 7 5 11 11 H 1.48505 * 109.47248 * 210.00237 * 9 7 5 12 12 H 1.48496 * 109.47744 * 330.00464 * 9 7 5 13 13 C 1.53008 * 109.46934 * 119.99521 * 2 1 3 14 14 N 1.46900 * 109.47189 * 294.99982 * 13 2 1 15 15 C 1.46900 * 110.99768 * 180.02562 * 14 13 2 16 16 C 1.50696 * 109.46836 * 179.97438 * 15 14 13 17 17 O 1.21287 * 120.00434 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99885 * 179.97438 * 16 15 14 19 19 C 1.46506 * 120.00033 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47289 * 275.00400 * 19 18 16 21 21 C 1.52996 * 109.47131 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47518 * 59.99828 * 21 20 19 23 23 C 1.53005 * 109.46632 * 300.00318 * 22 21 20 24 24 C 1.52996 * 109.47571 * 60.00168 * 23 22 21 25 25 H 1.09007 * 109.47161 * 300.00610 * 1 2 3 26 26 H 1.08994 * 109.46859 * 59.99844 * 1 2 3 27 27 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47318 * 185.00030 * 4 2 1 29 29 H 1.09006 * 109.47529 * 305.00094 * 4 2 1 30 30 H 0.96997 * 119.99696 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.46964 * 174.99811 * 13 2 1 32 32 H 1.08999 * 109.46693 * 54.99943 * 13 2 1 33 33 H 1.00897 * 111.00115 * 303.95386 * 14 13 2 34 34 H 1.09001 * 109.47358 * 59.99943 * 15 14 13 35 35 H 1.08997 * 109.47076 * 300.00022 * 15 14 13 36 36 H 0.97000 * 120.00155 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.47060 * 35.00669 * 19 18 16 38 38 H 1.09001 * 109.46832 * 299.99854 * 20 19 18 39 39 H 1.08996 * 109.46952 * 59.99873 * 20 19 18 40 40 H 1.09001 * 109.46997 * 299.99574 * 21 20 19 41 41 H 1.09004 * 109.47552 * 179.97438 * 21 20 19 42 42 H 1.08992 * 109.47399 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47194 * 59.99866 * 22 21 20 44 44 H 1.09001 * 109.47420 * 299.99415 * 23 22 21 45 45 H 1.09004 * 109.46832 * 179.97438 * 23 22 21 46 46 H 1.08992 * 109.47346 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47364 * 59.99212 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0568 -2.4766 6 1 1.0807 0.9744 -2.3756 7 6 1.9932 -0.4020 -3.7282 8 7 2.6764 -1.5191 -3.8510 9 14 1.4984 0.5622 -5.2496 10 1 2.5631 1.5425 -5.5824 11 1 1.3121 -0.3719 -6.3889 12 1 0.2267 1.2827 -4.9872 13 6 2.0400 -0.7212 1.2494 14 7 1.6514 0.0376 2.4457 15 6 2.1257 -0.6263 3.6672 16 6 1.7098 0.1796 4.8708 17 8 1.0805 1.2062 4.7253 18 7 2.0370 -0.2405 6.1089 19 6 1.6331 0.5432 7.2789 20 6 2.6656 1.6422 7.5379 21 6 2.2440 2.4602 8.7602 22 6 2.1574 1.5437 9.9822 23 6 1.1248 0.4447 9.7231 24 6 1.5464 -0.3734 8.5009 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2055 29 1 1.6053 -1.7200 -1.2950 30 1 2.9236 -1.8421 -4.7316 31 1 3.1263 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 1.9881 0.9874 2.3967 34 1 3.2127 -0.7035 3.6402 35 1 1.6921 -1.6243 3.7302 36 1 2.5406 -1.0613 6.2253 37 1 0.6589 0.9961 7.0943 38 1 3.6397 1.1893 7.7226 39 1 2.7276 2.2949 6.6672 40 1 1.2699 2.9131 8.5759 41 1 2.9798 3.2429 8.9450 42 1 1.8567 2.1264 10.8528 43 1 3.1316 1.0908 10.1665 44 1 0.1506 0.8975 9.5389 45 1 1.0634 -0.2086 10.5936 46 1 0.8106 -1.1560 8.3161 47 1 2.5206 -0.8263 8.6852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602536350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:11 Heat of formation + Delta-G solvation = -77.784262 kcal Electronic energy + Delta-G solvation = -21916.465448 eV Core-core repulsion = 18711.258354 eV Total energy + Delta-G solvation = -3205.207094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16893 -38.33638 -36.57942 -34.33304 -33.79350 -31.90342 -31.15203 -29.94036 -27.42576 -26.44041 -24.44152 -23.06230 -22.65287 -21.99803 -20.62150 -20.12476 -19.10240 -17.12110 -16.65867 -16.19873 -15.88089 -15.40144 -14.76096 -14.59749 -14.50425 -14.18099 -14.14156 -13.86039 -13.43288 -13.10425 -12.82488 -12.60249 -12.52824 -12.18309 -12.01657 -11.62874 -11.54044 -11.47536 -11.31453 -11.06380 -10.83935 -10.82817 -10.71442 -10.60007 -10.26769 -10.24217 -9.76880 -9.66278 -9.20183 -9.11342 -8.92374 -8.29886 -8.12355 -5.94951 -3.95570 2.62903 2.94266 3.35597 3.41700 3.45926 4.28145 4.35609 4.43175 4.51462 4.60071 4.73563 4.79610 4.86529 5.05653 5.10550 5.12933 5.23389 5.28019 5.33422 5.38653 5.40989 5.62704 5.67905 5.71640 5.72353 5.73181 5.84553 5.88672 5.96429 6.04371 6.18907 6.33496 6.43467 6.58187 6.75575 7.02027 7.19051 7.25449 7.29735 7.43169 7.65001 7.72769 7.88439 8.05560 8.20007 8.50114 9.10754 9.67617 11.16631 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050424 B = 0.002259 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.153448 B =12392.512438 C =12548.085729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.672 5.672 15 C 0.040 3.960 16 C 0.513 3.487 17 O -0.522 6.522 18 N -0.735 5.735 19 C 0.146 3.854 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.347 0.653 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 1.400 28.780 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.304 5.304 15 C -0.093 4.093 16 C 0.299 3.701 17 O -0.397 6.397 18 N -0.388 5.388 19 C 0.042 3.958 20 C -0.168 4.168 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.097 1.757 28.548 28.602 hybrid contribution 1.103 0.125 -0.910 1.435 sum 1.007 1.881 27.638 27.720 Atomic orbital electron populations 1.21597 0.95616 1.00548 1.00362 1.21198 0.96154 0.98993 0.93767 0.92712 1.19127 0.95872 0.95589 0.90427 1.21250 1.34463 1.08258 0.90967 0.92518 1.25027 0.95396 0.95122 0.99116 1.69968 1.39245 1.21231 1.23332 0.86616 0.78950 0.79776 0.82796 1.20790 1.21339 1.19866 1.22205 0.97187 0.97730 0.89242 1.60262 1.63987 1.06079 1.00072 1.21813 0.98831 0.98850 0.89799 1.20796 0.79026 0.86013 0.84236 1.90711 1.38498 1.24567 1.85875 1.46110 1.58959 1.27924 1.05778 1.20939 0.99043 0.91689 0.84176 1.21923 0.98712 0.97654 0.98533 1.21499 1.01949 0.97835 0.94290 1.21576 0.99376 0.97061 0.97890 1.21484 0.99297 0.97403 0.97241 1.21807 1.02189 0.98149 0.94271 0.93716 0.92748 0.94206 0.96932 0.96516 0.93148 0.95629 0.91397 0.83398 0.92721 0.88311 0.76825 0.89475 0.91944 0.91348 0.91670 0.91762 0.91886 0.91956 0.91604 0.91565 0.91269 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.67 -10.47 5.58 -115.06 -0.64 -11.11 16 15 C 0.04 0.47 6.17 -4.98 -0.03 0.44 16 16 C 0.51 6.40 7.83 -10.99 -0.09 6.31 16 17 O -0.52 -8.71 15.86 5.55 0.09 -8.62 16 18 N -0.73 -6.46 5.08 -53.80 -0.27 -6.74 16 19 C 0.15 1.24 2.46 -67.93 -0.17 1.07 16 20 C -0.13 -1.08 5.49 -26.73 -0.15 -1.22 16 21 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 22 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 23 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 24 C -0.13 -0.76 5.39 -26.73 -0.14 -0.90 16 25 H 0.04 0.85 7.75 -51.92 -0.40 0.45 16 26 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 37 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -32.54 371.76 -9.94 -42.48 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.95 Total: 0.60 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.47 Total: -12.74 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.18 Total: -44.31 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.54 -9.94 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602536350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.306 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds