Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99681 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.46501 * 120.00027 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47183 * 275.00329 * 19 18 16 21 21 C 1.53001 * 109.47026 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47327 * 59.99688 * 21 20 19 23 23 C 1.52999 * 109.47193 * 299.99775 * 22 21 20 24 24 C 1.53004 * 109.46965 * 154.99774 * 19 18 16 25 25 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 26 26 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 27 27 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 29 29 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 32 32 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 33 33 H 1.00894 * 110.99896 * 56.04225 * 14 13 2 34 34 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 35 35 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 36 36 H 0.96995 * 119.99942 * 359.97438 * 18 16 15 37 37 H 1.09002 * 109.46845 * 35.00173 * 19 18 16 38 38 H 1.09005 * 109.46381 * 299.99582 * 20 19 18 39 39 H 1.08996 * 109.47199 * 59.99559 * 20 19 18 40 40 H 1.09002 * 109.46674 * 299.99643 * 21 20 19 41 41 H 1.08996 * 109.47099 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46843 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47640 * 60.00039 * 22 21 20 44 44 H 1.09002 * 109.47457 * 300.00443 * 23 22 21 45 45 H 1.09000 * 109.47150 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47370 * 300.00220 * 24 19 18 47 47 H 1.09002 * 109.47013 * 60.00502 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 8 1.0788 1.2045 -4.7254 18 7 2.0350 -0.2424 -6.1089 19 6 1.6292 0.5400 -7.2792 20 6 0.2052 0.1525 -7.6829 21 6 -0.2184 0.9692 -8.9054 22 6 0.7366 0.6828 -10.0659 23 6 2.1606 1.0703 -9.6622 24 6 2.5842 0.2542 -8.4399 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2952 30 1 1.9007 -0.0402 5.6795 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9872 -2.3966 34 1 3.2117 -0.7051 -3.6404 35 1 1.6905 -1.6250 -3.7296 36 1 2.5391 -1.0629 -6.2252 37 1 1.6615 1.6019 -7.0352 38 1 0.1730 -0.9094 -7.9268 39 1 -0.4751 0.3561 -6.8559 40 1 -0.1860 2.0312 -8.6618 41 1 -1.2327 0.6929 -9.1933 42 1 0.4350 1.2650 -10.9367 43 1 0.7043 -0.3791 -10.3095 44 1 2.1929 2.1323 -9.4186 45 1 2.8410 0.8658 -10.4889 46 1 3.5986 0.5302 -8.1523 47 1 2.5519 -0.8077 -8.6839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602536351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -73.918687 kcal Electronic energy + Delta-G solvation = -21967.130975 eV Core-core repulsion = 18762.091505 eV Total energy + Delta-G solvation = -3205.039470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20546 -38.37106 -36.70226 -34.36868 -33.85942 -31.95691 -31.16810 -29.99810 -27.85265 -26.69507 -24.44313 -23.07184 -22.57297 -21.81204 -20.66175 -20.14283 -19.13056 -17.23906 -16.72992 -16.56898 -15.97665 -15.27989 -14.89600 -14.58169 -14.50455 -14.35768 -14.12563 -13.78775 -13.31971 -13.26420 -12.90171 -12.71965 -12.59945 -12.43533 -12.09017 -11.64902 -11.62539 -11.56266 -11.54800 -11.07784 -10.92507 -10.85011 -10.71905 -10.61470 -10.44841 -9.87106 -9.75423 -9.69842 -9.36900 -9.23755 -9.02045 -8.48684 -8.20652 -5.98598 -3.95340 2.58552 2.90098 3.33124 3.40286 3.43413 4.26020 4.32980 4.40010 4.49218 4.53491 4.70006 4.77101 4.84785 5.03661 5.09219 5.10522 5.20637 5.21522 5.26306 5.34708 5.37041 5.60200 5.60813 5.66513 5.69941 5.71197 5.75520 5.83622 5.96415 6.02999 6.05427 6.29244 6.32031 6.44810 6.64805 6.86887 7.05833 7.14270 7.22969 7.33385 7.37692 7.49409 7.59751 7.86102 8.15870 8.61486 9.07826 9.64056 11.14890 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048160 B = 0.002365 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.251193 B =11834.727502 C =12121.385332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.671 5.671 15 C 0.040 3.960 16 C 0.513 3.487 17 O -0.521 6.521 18 N -0.735 5.735 19 C 0.146 3.854 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.349 0.651 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -3.182 -31.242 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.303 5.303 15 C -0.093 4.093 16 C 0.299 3.701 17 O -0.395 6.395 18 N -0.388 5.388 19 C 0.042 3.958 20 C -0.168 4.168 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.273 -2.697 -30.947 31.090 hybrid contribution 1.738 -1.192 0.254 2.122 sum 3.011 -3.889 -30.692 31.084 Atomic orbital electron populations 1.21611 0.95161 1.00614 1.00919 1.21004 0.96506 0.99114 0.92626 0.92063 1.19618 0.95664 0.95896 0.93491 1.21142 1.35190 1.09561 0.89062 0.90771 1.25042 0.95733 0.96970 0.95974 1.69919 1.47274 1.39263 0.98004 0.86791 0.80601 0.84389 0.77537 1.20391 1.19168 1.21535 1.22226 0.97108 0.97775 0.89490 1.60206 1.64049 1.06130 0.99957 1.21809 0.98807 0.98839 0.89805 1.20767 0.79168 0.85981 0.84207 1.90719 1.38372 1.24511 1.85907 1.46104 1.58792 1.28116 1.05746 1.20939 0.93654 0.96946 0.84279 1.21926 0.96611 1.00036 0.98270 1.21500 0.98937 1.00520 0.94623 1.21576 0.94856 1.01480 0.97997 1.21475 0.96714 1.00180 0.97050 1.21800 0.98936 1.00904 0.94771 0.92214 0.93453 0.94270 0.96958 0.97031 0.92864 0.95671 0.91402 0.83191 0.92728 0.88336 0.76849 0.89524 0.91931 0.91191 0.91679 0.91721 0.91878 0.91951 0.91617 0.91568 0.91352 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.89 37.16 0.33 -2.19 16 2 C -0.07 -1.48 2.48 -90.62 -0.22 -1.71 16 3 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.65 8.96 -34.44 -0.31 -14.96 16 6 H 0.07 2.29 7.30 -52.49 -0.38 1.91 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.06 1.02 5.07 -3.83 -0.02 1.00 16 14 N -0.67 -9.99 5.58 -115.06 -0.64 -10.63 16 15 C 0.04 0.45 6.17 -4.98 -0.03 0.42 16 16 C 0.51 6.16 7.83 -10.99 -0.09 6.08 16 17 O -0.52 -8.51 15.87 5.55 0.09 -8.42 16 18 N -0.73 -6.18 5.08 -53.80 -0.27 -6.45 16 19 C 0.15 1.20 2.46 -67.93 -0.17 1.04 16 20 C -0.13 -1.07 5.50 -26.73 -0.15 -1.22 16 21 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 22 C -0.12 -0.67 5.92 -26.73 -0.16 -0.82 16 23 C -0.12 -0.62 5.92 -26.75 -0.16 -0.78 16 24 C -0.13 -0.72 5.39 -26.75 -0.14 -0.87 16 25 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 26 H 0.05 0.89 7.75 -51.92 -0.40 0.49 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.35 5.39 8.43 -39.30 -0.33 5.06 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 2.21 8.60 -40.82 -0.35 1.86 16 37 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.06 368.16 -9.56 -42.62 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.92 Total: 1.08 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.47 Total: -13.53 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.14 Total: -44.58 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.06 -9.56 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602536351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.299 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds