Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 119.99808 * 2 1 4 4 N 1.34778 * 120.00023 * 179.97438 * 2 1 3 5 5 C 1.46919 * 120.63255 * 179.97438 * 4 2 1 6 6 C 1.53195 * 108.89273 * 126.34238 * 5 4 2 7 7 C 1.53346 * 109.14901 * 54.57640 * 6 5 4 8 8 C 1.53004 * 109.41904 * 178.67276 * 7 6 5 9 9 N 1.46901 * 109.47273 * 295.13166 * 8 7 6 10 10 C 1.46892 * 110.99941 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46978 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46974 * 55.00577 * 11 10 9 13 13 C 1.52998 * 109.47411 * 294.99828 * 11 10 9 14 14 C 1.53008 * 109.46901 * 175.00184 * 11 10 9 15 15 C 1.50703 * 109.46669 * 185.00402 * 14 11 10 16 16 H 1.07997 * 120.00097 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99552 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00044 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99679 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47024 * 60.00193 * 19 17 15 21 21 H 1.48498 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47200 * 300.00283 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 7 6 5 24 24 C 1.46933 * 120.62741 * 0.02562 * 4 2 1 25 25 H 1.09001 * 109.47269 * 240.00026 * 1 2 3 26 26 H 1.09008 * 109.46962 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47488 * 119.99604 * 1 2 3 28 28 H 1.09002 * 109.58751 * 246.20189 * 5 4 2 29 29 H 1.08996 * 109.58750 * 6.48373 * 5 4 2 30 30 H 1.08997 * 109.49914 * 174.65962 * 6 5 4 31 31 H 1.09002 * 109.49585 * 294.75599 * 6 5 4 32 32 H 1.09001 * 109.42242 * 58.75065 * 7 6 5 33 33 H 1.09001 * 109.46592 * 55.13132 * 8 7 6 34 34 H 1.08997 * 109.47133 * 175.12697 * 8 7 6 35 35 H 1.00898 * 110.99851 * 56.04100 * 9 8 7 36 36 H 1.08997 * 109.47620 * 299.99656 * 10 9 8 37 37 H 1.09009 * 109.47147 * 60.00030 * 10 9 8 38 38 H 1.09000 * 109.47144 * 300.00376 * 13 11 10 39 39 H 1.09003 * 109.46633 * 60.00146 * 13 11 10 40 40 H 1.09000 * 109.47078 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46742 * 304.99949 * 14 11 10 42 42 H 1.08995 * 109.46888 * 65.00345 * 14 11 10 43 43 H 0.96998 * 120.00011 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50232 * 301.42239 * 23 7 6 45 45 H 1.09000 * 109.49784 * 181.32304 * 23 7 6 46 46 H 1.08994 * 109.58580 * 353.38021 * 24 4 2 47 47 H 1.09006 * 109.57831 * 113.65514 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1834 0.0000 6 6 4.1370 -2.0470 1.1679 7 6 3.4900 -3.4340 1.0718 8 6 3.9979 -4.3126 2.2169 9 7 5.4401 -4.5408 2.0565 10 6 5.9638 -5.3820 3.1410 11 6 7.4651 -5.5976 2.9396 12 1 7.9634 -4.6314 2.8597 13 6 7.6978 -6.3991 1.6573 14 6 8.0342 -6.3679 4.1328 15 6 9.5312 -6.4733 3.9947 16 1 10.0270 -6.0352 3.1411 17 6 10.2679 -7.1292 4.9583 18 7 9.6641 -7.6631 5.9974 19 14 12.1233 -7.2605 4.7867 20 1 12.7145 -5.8988 4.7483 21 1 12.6758 -8.0080 5.9449 22 1 12.4547 -7.9796 3.5304 23 6 1.9688 -3.2990 1.1688 24 6 1.4602 -2.4477 0.0005 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 4.0104 -1.6024 -0.9395 29 1 4.0267 -0.1671 0.1151 30 1 5.2216 -2.1437 1.1213 31 1 3.8532 -1.5781 2.1101 32 1 3.7539 -3.8918 0.1184 33 1 3.8126 -3.8129 3.1678 34 1 3.4747 -5.2686 2.2009 35 1 5.9409 -3.6665 2.0035 36 1 5.7923 -4.8894 4.0981 37 1 5.4542 -6.3456 3.1317 38 1 7.1995 -7.3652 1.7372 39 1 7.2923 -5.8503 0.8073 40 1 8.7674 -6.5522 1.5137 41 1 7.7907 -5.8406 5.0552 42 1 7.6005 -7.3674 4.1603 43 1 10.1823 -8.1248 6.6750 44 1 1.7054 -2.8186 2.1110 45 1 1.5122 -4.2878 1.1240 46 1 0.3920 -2.2657 0.1185 47 1 1.6405 -2.9683 -0.9400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602536468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = -66.952874 kcal Electronic energy + Delta-G solvation = -22233.280902 eV Core-core repulsion = 19028.543493 eV Total energy + Delta-G solvation = -3204.737410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46123 -38.24954 -36.64250 -34.64725 -32.85488 -31.90129 -31.50821 -29.70094 -27.38441 -26.56457 -24.87972 -23.55843 -23.01163 -21.97826 -20.73737 -19.30292 -19.02515 -17.35653 -16.32544 -16.17167 -15.94595 -15.48729 -14.82535 -14.59632 -14.42203 -14.33901 -13.93908 -13.73785 -13.49840 -13.30553 -12.99893 -12.65945 -12.47944 -12.41878 -12.12092 -12.01430 -11.56591 -11.53723 -11.35242 -11.10238 -10.86282 -10.83464 -10.74126 -10.55234 -10.28611 -10.22880 -10.06376 -9.69462 -9.14318 -8.99946 -8.92165 -8.32126 -8.12863 -5.96998 -3.98140 2.32212 2.69324 3.34916 3.39190 3.41772 4.19194 4.24254 4.43728 4.49099 4.57249 4.72678 4.76794 4.84091 4.96762 4.98920 5.03452 5.20432 5.34731 5.38669 5.39168 5.45100 5.49394 5.59897 5.68129 5.73175 5.74652 5.80753 5.87710 5.96750 6.15956 6.19630 6.23707 6.41779 6.55469 6.68842 7.01562 7.08335 7.18322 7.20301 7.36653 7.63668 7.70252 7.85917 7.86190 8.03129 8.47169 9.08024 9.65105 11.14514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039544 B = 0.002451 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.899887 B =11421.575673 C =11693.559081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.550 6.550 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.131 4.131 7 C -0.086 4.086 8 C 0.063 3.937 9 N -0.688 5.688 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.052 0.948 13 C -0.122 4.122 14 C 0.027 3.973 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.130 4.130 24 C 0.108 3.892 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.336 0.664 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 10.287 -12.371 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.428 6.428 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.169 4.169 7 C -0.104 4.104 8 C -0.066 4.066 9 N -0.319 5.319 10 C -0.065 4.065 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.179 4.179 14 C -0.010 4.010 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.169 4.169 24 C -0.015 4.015 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.244 10.214 -12.638 25.959 hybrid contribution 1.010 0.291 0.892 1.378 sum -19.235 10.505 -11.746 24.866 Atomic orbital electron populations 1.21943 0.91925 1.05383 1.04079 1.20822 0.90647 0.83073 0.75513 1.90716 1.70802 1.31106 1.50160 1.48192 1.07212 1.06008 1.73273 1.21606 0.79019 1.01911 0.98613 1.22049 1.01151 0.95225 0.98513 1.21220 0.93829 0.95058 1.00338 1.21955 0.90106 0.98796 0.95779 1.60587 1.02378 1.20938 1.48001 1.22146 0.97315 0.96534 0.90490 1.21199 0.91559 0.99378 0.98002 0.92908 1.21582 1.01108 0.98770 0.96487 1.19119 0.95439 0.94949 0.91520 1.21202 0.92299 1.34767 1.06852 0.92621 1.25027 0.98392 0.95751 0.95425 1.69953 1.35577 1.37140 1.11042 0.86684 0.85869 0.78130 0.77467 1.20312 1.21385 1.20263 1.21951 0.96204 1.00235 0.98487 1.21797 0.96576 0.83923 0.99239 0.89370 0.89080 0.89429 0.91326 0.89093 0.90057 0.91777 0.89911 0.95723 0.91159 0.84595 0.95878 0.91610 0.94199 0.93964 0.92806 0.96980 0.96583 0.93052 0.91473 0.90294 0.89624 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 8.67 36.00 0.31 -0.65 16 2 C 0.51 5.06 7.81 -10.99 -0.09 4.98 16 3 O -0.55 -7.93 16.50 5.56 0.09 -7.84 16 4 N -0.61 -5.21 2.97 -172.74 -0.51 -5.72 16 5 C 0.11 1.02 6.42 -3.71 -0.02 1.00 16 6 C -0.13 -1.19 5.18 -26.45 -0.14 -1.33 16 7 C -0.09 -0.74 2.36 -90.42 -0.21 -0.95 16 8 C 0.06 0.70 5.14 -3.82 -0.02 0.68 16 9 N -0.69 -9.41 5.95 -113.78 -0.68 -10.09 16 10 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 11 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 12 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 16 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.13 -0.86 5.37 -26.59 -0.14 -1.00 16 24 C 0.11 0.61 6.34 -3.68 -0.02 0.59 16 25 H 0.09 0.34 7.69 -51.93 -0.40 -0.06 16 26 H 0.09 0.52 8.12 -51.92 -0.42 0.10 16 27 H 0.09 0.31 7.94 -51.93 -0.41 -0.10 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 30 H 0.08 0.76 6.63 -51.93 -0.34 0.42 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.34 4.42 6.95 -39.29 -0.27 4.14 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 40 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.31 5.93 -51.93 -0.31 0.00 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -32.66 365.95 -9.34 -42.00 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.71 Total: -2.09 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.76 Total: -12.19 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.45 Total: -42.16 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.66 -9.34 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602536468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.957 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds