Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21272 * 119.99984 * 2 1 4 4 N 1.34776 * 119.99376 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62478 * 179.97438 * 4 2 1 6 6 C 1.53195 * 108.77920 * 233.62880 * 5 4 2 7 7 C 1.53033 * 109.31222 * 305.36835 * 6 5 4 8 8 C 1.53000 * 109.46124 * 181.38240 * 7 6 5 9 9 N 1.46900 * 109.47059 * 174.97321 * 8 7 6 10 10 C 1.46897 * 110.99727 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.47448 * 304.99654 * 11 10 9 13 13 C 1.53001 * 109.47080 * 65.00472 * 11 10 9 14 14 C 1.53002 * 109.46893 * 184.99774 * 11 10 9 15 15 C 1.50706 * 109.47153 * 174.99718 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.53045 * 109.52734 * 61.36818 * 7 6 5 24 24 C 1.46921 * 120.63926 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.46734 * 239.99836 * 1 2 3 26 26 H 1.08994 * 109.46758 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47038 * 120.00055 * 1 2 3 28 28 H 1.09001 * 109.58713 * 113.84277 * 5 4 2 29 29 H 1.09004 * 109.70741 * 353.48894 * 5 4 2 30 30 H 1.08995 * 109.49585 * 185.41347 * 6 5 4 31 31 H 1.09005 * 109.49248 * 65.31323 * 6 5 4 32 32 H 1.09002 * 109.46397 * 301.35992 * 7 6 5 33 33 H 1.08995 * 109.46999 * 54.96982 * 8 7 6 34 34 H 1.09003 * 109.46925 * 294.97219 * 8 7 6 35 35 H 1.00902 * 110.99874 * 303.95251 * 9 8 7 36 36 H 1.08997 * 109.47423 * 60.00043 * 10 9 8 37 37 H 1.09001 * 109.47481 * 299.99662 * 10 9 8 38 38 H 1.09000 * 109.47309 * 59.99633 * 13 11 10 39 39 H 1.09000 * 109.46932 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.46866 * 299.99538 * 13 11 10 41 41 H 1.09004 * 109.47178 * 55.00508 * 14 11 10 42 42 H 1.08993 * 109.47411 * 295.00191 * 14 11 10 43 43 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 44 44 H 1.08999 * 109.49957 * 58.57899 * 23 7 6 45 45 H 1.09001 * 109.49816 * 178.67808 * 23 7 6 46 46 H 1.08995 * 109.59083 * 246.16012 * 24 4 2 47 47 H 1.09001 * 109.58175 * 6.43892 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6500 -1.1834 -0.0011 6 6 4.1333 -2.0487 -1.1693 7 6 3.4895 -3.4337 -1.0735 8 6 3.9964 -4.3118 -2.2193 9 7 3.4734 -5.6753 -2.0596 10 6 3.9401 -6.5485 -3.1447 11 6 3.3766 -7.9568 -2.9441 12 1 3.6441 -8.3171 -1.9509 13 6 1.8531 -7.9207 -3.0805 14 6 3.9611 -8.8953 -4.0017 15 6 3.5032 -10.3053 -3.7303 16 1 2.8593 -10.5111 -2.8881 17 6 3.9062 -11.3323 -4.5572 18 7 4.6860 -11.0807 -5.5859 19 14 3.3380 -13.0797 -4.2212 20 1 3.9005 -13.9898 -5.2510 21 1 3.8069 -13.5030 -2.8772 22 1 1.8548 -13.1356 -4.2683 23 6 1.9680 -3.2984 -1.1695 24 6 1.4603 -2.4477 -0.0017 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3632 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.0112 -1.6028 0.9380 29 1 4.0288 -0.1680 -0.1174 30 1 5.2178 -2.1476 -1.1244 31 1 3.8488 -1.5797 -2.1113 32 1 3.7537 -3.8919 -0.1204 33 1 5.0860 -4.3364 -2.2035 34 1 3.6560 -3.9011 -3.1698 35 1 3.7213 -6.0543 -1.1579 36 1 5.0293 -6.5887 -3.1358 37 1 3.5989 -6.1532 -4.1015 38 1 1.5857 -7.5604 -4.0739 39 1 1.4517 -8.9239 -2.9372 40 1 1.4366 -7.2521 -2.3271 41 1 5.0497 -8.8532 -3.9630 42 1 3.6204 -8.5865 -4.9898 43 1 4.9809 -10.1733 -5.7606 44 1 1.7043 -2.8175 -2.1115 45 1 1.5113 -4.2871 -1.1248 46 1 1.6425 -2.9703 0.9373 47 1 0.3919 -2.2655 -0.1171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602536469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -71.720431 kcal Electronic energy + Delta-G solvation = -22293.761551 eV Core-core repulsion = 19088.817405 eV Total energy + Delta-G solvation = -3204.944146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45384 -38.24329 -36.75193 -34.75542 -33.10869 -31.98958 -31.29046 -29.79402 -27.23298 -26.37721 -24.78371 -23.57806 -22.93392 -22.03101 -20.90360 -19.47274 -19.11377 -17.35554 -16.70580 -16.17510 -15.82315 -15.46600 -14.96198 -14.70288 -14.32841 -14.08309 -13.85004 -13.72330 -13.51516 -13.29313 -13.23506 -12.73273 -12.57904 -12.35523 -12.21930 -11.90014 -11.69652 -11.53102 -11.39454 -11.04326 -10.99571 -10.81344 -10.75027 -10.66273 -10.20191 -10.09654 -10.07079 -9.83506 -9.45787 -8.96049 -8.47643 -8.30574 -8.21738 -6.33090 -4.01296 2.32728 2.70533 3.44238 3.46194 3.64816 4.19627 4.24682 4.41441 4.56335 4.57674 4.75944 4.80785 4.87263 4.98053 5.01704 5.06730 5.18139 5.36108 5.40921 5.43140 5.45185 5.47624 5.55717 5.63417 5.69369 5.74865 5.76795 5.84428 5.98634 6.03317 6.16588 6.25742 6.30377 6.41808 6.55898 6.86672 7.03577 7.09009 7.09777 7.24143 7.40137 7.53075 7.60434 7.86305 8.25992 8.49537 8.91812 9.70248 11.07271 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042915 B = 0.002463 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.295585 B =11365.030827 C =11743.735891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.553 6.553 4 N -0.612 5.612 5 C 0.112 3.888 6 C -0.129 4.129 7 C -0.083 4.083 8 C 0.062 3.938 9 N -0.685 5.685 10 C 0.063 3.937 11 C -0.075 4.075 12 H 0.054 0.946 13 C -0.121 4.121 14 C 0.013 3.987 15 C -0.593 4.593 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C -0.122 4.122 24 C 0.104 3.896 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.268 0.732 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 19.441 12.188 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.431 6.431 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.168 4.168 7 C -0.102 4.102 8 C -0.067 4.067 9 N -0.316 5.316 10 C -0.065 4.065 11 C -0.094 4.094 12 H 0.073 0.927 13 C -0.178 4.178 14 C -0.024 4.024 15 C -0.632 4.632 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.552 5.552 19 Si 0.896 3.104 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.160 4.160 24 C -0.019 4.019 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.598 18.583 11.318 22.736 hybrid contribution 0.912 1.307 0.731 1.753 sum -5.686 19.890 12.049 23.940 Atomic orbital electron populations 1.21945 0.91840 1.05347 1.04234 1.20835 0.90701 0.83022 0.75379 1.90700 1.70842 1.31167 1.50422 1.48207 1.07022 1.06234 1.73191 1.21570 0.79468 1.01739 0.98310 1.21948 1.00553 0.95404 0.98897 1.21132 0.95531 0.94532 0.99050 1.21973 0.96444 0.89791 0.98502 1.60512 1.63253 1.01730 1.06063 1.22147 0.96465 0.93907 0.94001 1.21052 0.95979 0.92027 1.00321 0.92742 1.21567 0.95583 1.00805 0.99862 1.19254 0.94980 0.94688 0.93484 1.22024 1.33405 0.92853 1.14893 0.93227 1.25832 0.94989 1.04752 0.93575 1.70782 1.32833 1.23776 1.27838 0.83568 0.75932 0.75142 0.75781 1.20858 1.21530 1.21465 1.21877 0.95557 1.00909 0.97657 1.21878 0.96705 0.83674 0.99618 0.89390 0.89110 0.89246 0.91590 0.89111 0.90719 0.91403 0.91098 0.95569 0.91272 0.84646 0.95975 0.91693 0.94315 0.92693 0.93811 0.97934 0.97519 0.92205 0.91742 0.88877 0.91213 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 8.67 36.01 0.31 -0.74 16 2 C 0.51 5.16 7.81 -10.98 -0.09 5.08 16 3 O -0.55 -7.89 16.50 5.56 0.09 -7.80 16 4 N -0.61 -5.31 2.97 -172.79 -0.51 -5.83 16 5 C 0.11 0.97 6.43 -3.71 -0.02 0.94 16 6 C -0.13 -1.06 5.36 -26.61 -0.14 -1.20 16 7 C -0.08 -0.71 2.29 -90.58 -0.21 -0.92 16 8 C 0.06 0.68 5.07 -3.82 -0.02 0.66 16 9 N -0.69 -8.85 5.39 -113.78 -0.61 -9.46 16 10 C 0.06 1.05 5.07 -3.82 -0.02 1.03 16 11 C -0.07 -1.49 2.48 -90.62 -0.22 -1.72 16 12 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.12 -2.28 8.89 37.16 0.33 -1.95 16 14 C 0.01 0.34 3.76 -27.88 -0.10 0.23 16 15 C -0.59 -16.69 8.41 -34.44 -0.29 -16.98 16 16 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 17 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -28.20 13.65 55.43 0.76 -27.44 16 19 Si 1.07 25.32 29.90 -169.99 -5.08 20.23 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -0.99 5.26 -26.63 -0.14 -1.13 16 24 C 0.10 0.69 6.34 -3.74 -0.02 0.67 16 25 H 0.09 0.37 7.94 -51.93 -0.41 -0.04 16 26 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 27 H 0.09 0.42 7.69 -51.93 -0.40 0.02 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.92 7.01 -51.93 -0.36 0.55 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.34 4.14 8.73 -39.29 -0.34 3.79 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 40 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 41 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 42 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 43 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.42 5.93 -51.93 -0.31 0.12 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -32.75 366.88 -9.35 -42.10 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.78 Total: -1.53 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.74 Total: -15.80 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.37 Total: -42.74 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.75 -9.35 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602536469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.623 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds