Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00266 * 2 1 4 4 O 1.21279 * 120.00162 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99769 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46931 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47233 * 300.00761 * 6 5 3 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46903 * 111.00270 * 154.99879 * 9 8 7 11 11 C 1.53002 * 109.46994 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47325 * 304.99787 * 11 10 9 13 13 C 1.52995 * 109.47334 * 65.00413 * 11 10 9 14 14 C 1.52996 * 109.46879 * 185.00025 * 11 10 9 15 15 C 1.50699 * 109.47101 * 174.99768 * 14 11 10 16 16 H 1.07993 * 120.00351 * 0.02562 * 15 14 11 17 17 C 1.37884 * 120.00109 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47441 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46965 * 120.00604 * 19 17 15 22 22 H 1.48499 * 109.47154 * 239.99911 * 19 17 15 23 23 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 24 24 C 1.52997 * 109.46907 * 60.00708 * 5 3 2 25 25 H 1.08996 * 109.47366 * 59.99254 * 1 2 3 26 26 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46684 * 299.99693 * 1 2 3 28 28 H 0.97008 * 119.99402 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47221 * 300.00692 * 5 3 2 30 30 H 1.08992 * 109.47063 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46733 * 60.00104 * 6 5 3 32 32 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 33 33 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 35 35 H 1.00901 * 111.00047 * 278.95651 * 9 8 7 36 36 H 1.09000 * 109.47021 * 300.00052 * 10 9 8 37 37 H 1.08998 * 109.47037 * 60.00492 * 10 9 8 38 38 H 1.09001 * 109.47425 * 59.99436 * 13 11 10 39 39 H 1.09003 * 109.47512 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46882 * 299.99632 * 13 11 10 41 41 H 1.08998 * 109.47338 * 295.00097 * 14 11 10 42 42 H 1.09002 * 109.47452 * 55.00171 * 14 11 10 43 43 H 0.97011 * 120.00070 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 23 8 7 45 45 H 1.09002 * 109.46716 * 60.00091 * 23 8 7 46 46 H 1.09002 * 109.47153 * 179.97438 * 24 5 3 47 47 H 1.09001 * 109.47289 * 299.99763 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1670 0.0006 6 6 4.1560 2.6095 0.0011 7 6 3.6464 3.3312 -1.2481 8 6 4.1568 2.6103 -2.4973 9 7 3.6681 3.3034 -3.6967 10 6 4.5523 3.0577 -4.8438 11 6 4.0121 3.7947 -6.0711 12 1 2.9784 3.4974 -6.2477 13 6 4.0744 5.3039 -5.8281 14 6 4.8608 3.4396 -7.2936 15 6 4.2569 4.0667 -8.5236 16 1 3.3580 4.6595 -8.4417 17 6 4.8527 3.8844 -9.7537 18 7 5.9476 3.1628 -9.8535 19 14 4.1045 4.6623 -11.2783 20 1 2.8843 5.4193 -10.8998 21 1 5.0886 5.5871 -11.8958 22 1 3.7461 3.5993 -12.2513 23 6 3.6468 1.1678 -2.4980 24 6 4.1563 0.4456 -1.2484 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9499 -0.8402 -0.0004 29 1 4.0089 0.6533 0.8907 30 1 5.2460 2.6095 0.0011 31 1 3.7924 3.1231 0.8911 32 1 2.5564 3.3312 -1.2484 33 1 4.0102 4.3587 -1.2479 34 1 5.2468 2.6102 -2.4970 35 1 2.7187 3.0349 -3.9079 36 1 5.5542 3.4205 -4.6145 37 1 4.5913 1.9881 -5.0500 38 1 5.1081 5.6012 -5.6515 39 1 3.6901 5.8290 -6.7026 40 1 3.4698 5.5569 -4.9572 41 1 5.8742 3.8159 -7.1541 42 1 4.8888 2.3566 -7.4144 43 1 6.3666 3.0342 -10.7189 44 1 4.0107 0.6541 -3.3878 45 1 2.5568 1.1679 -2.4983 46 1 5.2463 0.4459 -1.2482 47 1 3.7929 -0.5820 -1.2484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602537103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -71.631637 kcal Electronic energy + Delta-G solvation = -22889.003937 eV Core-core repulsion = 19684.063641 eV Total energy + Delta-G solvation = -3204.940296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71481 -38.05294 -36.02865 -34.90788 -33.64378 -31.95181 -30.81115 -29.25077 -27.08533 -26.58446 -24.90208 -22.95737 -22.75466 -21.96145 -20.91783 -19.89162 -18.92982 -16.90744 -16.46852 -16.25812 -15.91436 -15.30399 -14.71434 -14.49991 -14.42773 -14.23895 -13.89632 -13.59391 -13.03991 -12.93633 -12.79471 -12.60931 -12.28597 -12.22029 -12.17923 -11.90490 -11.48382 -11.35228 -11.20027 -10.85702 -10.82175 -10.72284 -10.45450 -10.37190 -10.24268 -10.07802 -9.69035 -9.63686 -9.32565 -9.07701 -8.88419 -8.29971 -7.94363 -5.94703 -3.95323 2.46004 2.97640 3.34155 3.41643 3.46342 4.34220 4.38850 4.50656 4.54526 4.71647 4.86850 4.94811 5.11676 5.16659 5.21610 5.28866 5.41196 5.41667 5.49252 5.50721 5.62340 5.71118 5.77234 5.85419 5.94161 5.96823 6.05199 6.08916 6.18999 6.24045 6.41129 6.50059 6.58804 6.68952 6.77205 7.09970 7.19906 7.25785 7.27649 7.51691 7.72807 7.79189 7.90725 8.03586 8.06241 8.50943 9.11445 9.67901 11.16918 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.002977 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.350296 B = 9401.746784 C = 9583.201890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.518 3.482 4 O -0.528 6.528 5 C -0.108 4.108 6 C -0.097 4.097 7 C -0.119 4.119 8 C 0.089 3.911 9 N -0.682 5.682 10 C 0.065 3.935 11 C -0.083 4.083 12 H 0.052 0.948 13 C -0.122 4.122 14 C 0.027 3.973 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.152 4.152 24 C -0.105 4.105 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.336 0.664 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -9.006 22.993 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.305 3.695 4 O -0.404 6.404 5 C -0.130 4.130 6 C -0.135 4.135 7 C -0.157 4.157 8 C -0.021 4.021 9 N -0.311 5.311 10 C -0.064 4.064 11 C -0.102 4.102 12 H 0.070 0.930 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.192 4.192 24 C -0.143 4.143 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.627 -7.671 23.013 24.902 hybrid contribution -0.314 -1.193 -1.204 1.724 sum -5.941 -8.864 21.809 24.279 Atomic orbital electron populations 1.21518 0.79812 1.02052 1.02357 1.45870 1.07683 1.08888 1.76723 1.20720 0.90245 0.83415 0.75096 1.90660 1.70410 1.30977 1.48372 1.21406 0.91514 0.99890 1.00166 1.21337 1.00030 0.92637 0.99542 1.21730 1.03466 0.98857 0.91668 1.21583 0.99175 0.90003 0.91372 1.60614 1.05888 1.60544 1.04008 1.22162 0.96421 0.97477 0.90315 1.21197 0.99694 0.95209 0.94085 0.92973 1.21579 1.00297 0.96091 0.99989 1.19120 0.94821 0.96339 0.90733 1.21296 1.10409 1.31092 0.92081 0.92519 1.25026 0.95056 0.95498 0.99048 1.69982 1.19478 1.40007 1.24308 0.86577 0.79271 0.79122 0.83303 1.19733 1.21098 1.21145 1.22348 1.00976 0.98109 0.97729 1.21488 1.01612 0.98103 0.93140 0.92168 0.90856 0.92351 0.76664 0.88822 0.91417 0.91404 0.89297 0.91561 0.90992 0.84614 0.91722 0.95994 0.94229 0.92881 0.93870 0.96596 0.97029 0.93210 0.91553 0.92091 0.90520 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.84 0.64 1.24 16 2 N -0.74 -5.47 5.61 -67.08 -0.38 -5.85 16 3 C 0.52 5.31 5.64 -10.98 -0.06 5.25 16 4 O -0.53 -7.49 13.66 5.56 0.08 -7.42 16 5 C -0.11 -0.90 3.01 -91.77 -0.28 -1.17 16 6 C -0.10 -0.96 5.09 -26.73 -0.14 -1.09 16 7 C -0.12 -1.50 5.23 -26.73 -0.14 -1.64 16 8 C 0.09 1.15 2.47 -67.72 -0.17 0.98 16 9 N -0.68 -10.53 5.70 -106.73 -0.61 -11.14 16 10 C 0.06 1.16 4.87 -3.82 -0.02 1.14 16 11 C -0.08 -1.75 2.48 -90.62 -0.22 -1.98 16 12 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.12 -2.49 8.89 37.15 0.33 -2.16 16 14 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 15 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 16 H 0.06 1.59 7.05 -52.49 -0.37 1.22 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.15 -1.70 4.95 -26.70 -0.13 -1.83 16 24 C -0.10 -0.85 5.36 -26.70 -0.14 -0.99 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.40 1.84 8.25 -40.82 -0.34 1.51 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.95 7.80 -51.93 -0.40 0.54 16 35 H 0.34 5.19 8.47 -39.29 -0.33 4.85 16 36 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 37 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 40 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 45 H 0.06 0.74 7.20 -51.93 -0.37 0.36 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.40 7.56 -51.93 -0.39 0.00 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -32.68 361.60 -9.24 -41.93 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.66 Total: 1.67 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.84 Total: -15.05 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.25 Total: -43.59 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.68 -9.24 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.704 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds