Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99677 * 2 1 4 4 O 1.21280 * 120.00060 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47543 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46853 * 299.99762 * 6 5 3 8 8 C 1.53001 * 109.47270 * 299.99968 * 7 6 5 9 9 N 1.46904 * 109.47022 * 180.02562 * 8 7 6 10 10 C 1.46897 * 110.99957 * 155.00308 * 9 8 7 11 11 C 1.52999 * 109.47488 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47160 * 54.99359 * 11 10 9 13 13 C 1.53006 * 109.46626 * 294.99728 * 11 10 9 14 14 C 1.52997 * 109.47592 * 174.99693 * 11 10 9 15 15 C 1.50692 * 109.47279 * 184.99832 * 14 11 10 16 16 H 1.08008 * 120.00068 * 359.97438 * 15 14 11 17 17 C 1.37883 * 120.00230 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00065 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99677 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47422 * 89.99919 * 19 17 15 21 21 H 1.48497 * 109.47139 * 210.00014 * 19 17 15 22 22 H 1.48503 * 109.47375 * 329.99872 * 19 17 15 23 23 C 1.52999 * 109.46958 * 59.99978 * 8 7 6 24 24 C 1.52997 * 109.47482 * 59.99290 * 5 3 2 25 25 H 1.08995 * 109.47563 * 300.00274 * 1 2 3 26 26 H 1.08997 * 109.47203 * 60.00545 * 1 2 3 27 27 H 1.09007 * 109.46893 * 180.02562 * 1 2 3 28 28 H 0.96995 * 120.00167 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46944 * 299.99708 * 5 3 2 30 30 H 1.09001 * 109.47561 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.47420 * 59.99099 * 6 5 3 32 32 H 1.09007 * 109.47010 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47287 * 59.99943 * 7 6 5 34 34 H 1.09001 * 109.47122 * 299.99660 * 8 7 6 35 35 H 1.00896 * 111.00330 * 31.04409 * 9 8 7 36 36 H 1.09002 * 109.47627 * 59.99395 * 10 9 8 37 37 H 1.09000 * 109.46866 * 299.99360 * 10 9 8 38 38 H 1.09001 * 109.46801 * 59.99811 * 13 11 10 39 39 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47050 * 299.99699 * 13 11 10 41 41 H 1.09001 * 109.46992 * 305.00257 * 14 11 10 42 42 H 1.08998 * 109.47097 * 64.99445 * 14 11 10 43 43 H 0.97001 * 119.99810 * 180.02562 * 18 17 15 44 44 H 1.08992 * 109.46926 * 60.00168 * 23 8 7 45 45 H 1.09005 * 109.46834 * 180.02562 * 23 8 7 46 46 H 1.08992 * 109.47766 * 180.02562 * 24 5 3 47 47 H 1.09007 * 109.47344 * 300.00487 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6098 -0.0002 7 6 3.6463 3.3301 -1.2502 8 6 4.1568 2.6080 -2.4987 9 7 3.6681 3.3000 -3.6988 10 6 4.5523 3.0532 -4.8456 11 6 4.0117 3.7879 -6.0740 12 1 3.8884 4.8453 -5.8398 13 6 2.6592 3.1921 -6.4701 14 6 4.9965 3.6340 -7.2347 15 6 4.5257 4.4577 -8.4055 16 1 3.6148 5.0332 -8.3294 17 6 5.2576 4.4769 -9.5738 18 7 4.8469 5.1962 -10.5954 19 14 6.8325 3.4812 -9.7056 20 1 6.5181 2.1228 -10.2169 21 1 7.7688 4.1570 -10.6392 22 1 7.4628 3.3719 -8.3654 23 6 3.6468 1.1655 -2.4978 24 6 4.1564 0.4457 -1.2482 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 4.0088 0.6537 0.8909 30 1 5.2458 2.6098 -0.0002 31 1 3.7920 3.1243 0.8892 32 1 4.0093 4.3580 -1.2505 33 1 2.5563 3.3301 -1.2506 34 1 5.2468 2.6081 -2.4983 35 1 3.5640 4.2891 -3.5288 36 1 4.5916 1.9834 -5.0506 37 1 5.5543 3.4162 -4.6165 38 1 1.9577 3.3018 -5.6431 39 1 2.2738 3.7158 -7.3450 40 1 2.7826 2.1347 -6.7043 41 1 5.9828 3.9771 -6.9223 42 1 5.0524 2.5855 -7.5272 43 1 5.3617 5.2093 -11.4174 44 1 2.5569 1.1655 -2.4983 45 1 4.0109 0.6509 -3.3871 46 1 5.2463 0.4454 -1.2475 47 1 3.7931 -0.5820 -1.2480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602537104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -67.447732 kcal Electronic energy + Delta-G solvation = -22965.709068 eV Core-core repulsion = 19760.950200 eV Total energy + Delta-G solvation = -3204.758868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71845 -38.06267 -36.14967 -34.90105 -33.68789 -31.99310 -30.87115 -29.45830 -27.40661 -26.83629 -24.95391 -23.01990 -22.78485 -21.67527 -20.76261 -19.81288 -18.99544 -16.90892 -16.67914 -16.44644 -15.92396 -15.47982 -14.84573 -14.64770 -14.30737 -14.13487 -13.94627 -13.67938 -13.36979 -12.96151 -12.65817 -12.54362 -12.46367 -12.32379 -12.17859 -12.02919 -11.65269 -11.58230 -11.15774 -10.99903 -10.93224 -10.71160 -10.58524 -10.33169 -10.18124 -9.74023 -9.70546 -9.68511 -9.34106 -9.29903 -9.00283 -8.48194 -8.06970 -5.98438 -3.94944 2.46561 2.98142 3.33521 3.40660 3.44522 4.26652 4.37779 4.47430 4.49859 4.66899 4.88942 4.99345 5.07114 5.15459 5.23484 5.28912 5.35140 5.36242 5.38317 5.52117 5.58878 5.65528 5.68891 5.82915 5.83816 5.88729 6.08695 6.09791 6.11650 6.13387 6.29821 6.38759 6.46411 6.57017 6.67200 6.90975 7.11089 7.20689 7.21092 7.35396 7.42166 7.52841 7.72943 7.87265 8.04006 8.61970 9.07888 9.64611 11.15143 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029690 B = 0.003130 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.852059 B = 8942.194922 C = 9154.532796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.520 3.480 4 O -0.529 6.529 5 C -0.108 4.108 6 C -0.094 4.094 7 C -0.134 4.134 8 C 0.089 3.911 9 N -0.683 5.683 10 C 0.063 3.937 11 C -0.074 4.074 12 H 0.059 0.941 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.109 4.109 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.340 0.660 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -13.108 25.158 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.307 3.693 4 O -0.405 6.405 5 C -0.130 4.130 6 C -0.133 4.133 7 C -0.172 4.172 8 C -0.021 4.021 9 N -0.314 5.314 10 C -0.066 4.066 11 C -0.093 4.093 12 H 0.077 0.923 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.147 4.147 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.233 0.767 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.801 -12.781 24.797 28.155 hybrid contribution 1.892 -0.467 -0.063 1.950 sum -1.909 -13.249 24.734 28.123 Atomic orbital electron populations 1.21522 0.79752 1.02052 1.02403 1.45840 1.07711 1.08833 1.76673 1.20658 0.90139 0.83454 0.75079 1.90653 1.70382 1.31017 1.48430 1.21391 0.91690 0.99573 1.00297 1.21283 0.99910 0.92929 0.99150 1.21961 1.04472 0.98058 0.92707 1.21486 0.96484 0.94192 0.89970 1.60469 1.51293 1.15663 1.03981 1.22197 0.92930 1.00569 0.90884 1.21007 0.96565 0.98364 0.93361 0.92250 1.21589 0.96449 0.99628 1.00413 1.19607 0.94458 0.96599 0.93997 1.21153 1.10121 1.27643 0.96006 0.90824 1.25035 0.97575 0.95273 0.95776 1.69920 1.39550 1.41174 1.03909 0.86798 0.84019 0.80472 0.78086 1.20392 1.21528 1.19154 1.21536 1.01428 0.95148 0.96607 1.21556 1.01482 0.98364 0.93435 0.92402 0.92037 0.90865 0.76677 0.88799 0.91496 0.91313 0.92398 0.88232 0.94506 0.84215 0.91776 0.96024 0.93659 0.92342 0.94367 0.97018 0.97140 0.92872 0.91416 0.91668 0.90760 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.70 59.85 0.64 1.24 16 2 N -0.74 -5.41 5.61 -67.08 -0.38 -5.79 16 3 C 0.52 5.27 5.64 -10.99 -0.06 5.21 16 4 O -0.53 -7.45 13.66 5.56 0.08 -7.38 16 5 C -0.11 -0.87 3.01 -91.78 -0.28 -1.14 16 6 C -0.09 -0.89 5.09 -26.73 -0.14 -1.02 16 7 C -0.13 -1.58 4.90 -26.73 -0.13 -1.71 16 8 C 0.09 1.11 2.49 -67.71 -0.17 0.94 16 9 N -0.68 -10.16 5.76 -106.72 -0.62 -10.78 16 10 C 0.06 1.07 4.87 -3.83 -0.02 1.05 16 11 C -0.07 -1.51 2.48 -90.62 -0.22 -1.73 16 12 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 14 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 15 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16 16 H 0.07 2.28 7.30 -52.48 -0.38 1.90 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 19 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 23 C -0.11 -1.23 5.21 -26.76 -0.14 -1.37 16 24 C -0.11 -0.86 5.35 -26.76 -0.14 -1.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.40 1.78 8.25 -40.82 -0.34 1.44 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 33 H 0.10 1.42 5.51 -51.93 -0.29 1.13 16 34 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 35 H 0.34 4.97 8.35 -39.29 -0.33 4.65 16 36 H 0.06 1.09 7.44 -51.93 -0.39 0.70 16 37 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 38 H 0.04 0.83 7.75 -51.93 -0.40 0.42 16 39 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.07 0.88 7.22 -51.93 -0.37 0.50 16 45 H 0.06 0.79 7.46 -51.93 -0.39 0.40 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -33.35 357.86 -8.87 -42.22 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.62 Total: 1.74 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.83 Total: -15.25 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.22 Total: -44.20 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.08 Total: -7.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.35 -8.87 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.231 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds