Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.47037 * 179.97438 * 17 16 15 19 19 C 1.45747 * 117.95007 * 269.74060 * 18 17 16 20 20 C 1.53105 * 110.38986 * 160.74102 * 19 18 17 21 21 C 1.53350 * 108.52392 * 51.11641 * 20 19 18 22 22 C 1.53070 * 108.42075 * 292.30778 * 21 20 19 23 23 C 1.33360 * 117.94271 * 89.99867 * 18 17 16 24 24 O 1.21284 * 118.24534 * 2.24848 * 23 18 17 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 1.08996 * 109.30059 * 281.23937 * 19 18 17 41 41 H 1.09003 * 109.30062 * 40.61213 * 19 18 17 42 42 H 1.08996 * 109.80710 * 291.33189 * 20 19 18 43 43 H 1.08995 * 109.67613 * 170.82629 * 20 19 18 44 44 H 1.08997 * 109.66943 * 172.58029 * 21 20 19 45 45 H 1.08997 * 109.70487 * 52.06041 * 21 20 19 46 46 H 1.08997 * 109.40221 * 288.76897 * 22 21 20 47 47 H 1.09005 * 109.32763 * 168.98442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7928 0.2834 7.3315 19 6 2.7076 1.3097 7.8152 20 6 1.9621 2.3172 8.6947 21 6 1.1732 1.5448 9.7590 22 6 0.0554 0.7655 9.0617 23 6 0.6134 0.0093 7.8904 24 8 -0.0434 -0.8995 7.4282 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.8938 -0.0449 -5.6799 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 3.5027 0.8399 8.3941 41 1 3.1458 1.8317 6.9646 42 1 1.2754 2.9033 8.0841 43 1 2.6777 2.9809 9.1798 44 1 0.7416 2.2441 10.4751 45 1 1.8361 0.8516 10.2768 46 1 -0.7080 1.4611 8.7133 47 1 -0.3892 0.0635 9.7672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -64.473669 kcal Electronic energy + Delta-G solvation = -21927.030866 eV Core-core repulsion = 18722.400963 eV Total energy + Delta-G solvation = -3204.629903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79972 -37.29660 -36.79122 -35.46644 -33.96100 -32.18784 -30.69113 -29.94499 -27.47374 -26.18174 -24.91534 -24.05111 -22.61684 -21.78579 -21.45801 -19.04941 -18.94260 -17.01453 -16.80347 -16.73422 -15.98531 -15.72672 -14.80946 -14.66137 -14.61047 -14.28839 -14.20208 -13.81905 -13.76240 -13.55974 -13.13168 -12.55682 -12.28133 -12.19957 -12.04283 -11.74893 -11.71762 -11.57002 -11.47860 -11.40933 -11.38293 -10.93647 -10.87592 -10.64629 -10.40446 -9.91239 -9.75491 -9.70768 -9.39011 -9.04584 -8.97897 -8.48861 -8.15527 -5.99276 -3.95917 2.38696 2.66725 3.33719 3.40723 3.44443 4.14919 4.23022 4.25069 4.31992 4.36623 4.49361 4.77647 4.86109 4.92571 5.00807 5.07070 5.20026 5.23994 5.30994 5.32893 5.34604 5.39468 5.42155 5.48558 5.62515 5.67133 5.70648 5.78496 5.99282 6.06418 6.07889 6.24823 6.35535 6.46784 6.63814 6.88945 7.08353 7.16168 7.19427 7.29191 7.35383 7.50307 7.63749 7.85994 7.90901 8.60676 9.06683 9.63721 11.14175 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039671 B = 0.002321 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.643243 B =12058.585940 C =12085.737398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.687 5.687 15 C 0.062 3.938 16 C -0.128 4.128 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.112 3.888 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.135 4.135 23 C 0.514 3.486 24 O -0.550 6.550 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 3.296 31.496 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.068 4.068 16 C -0.167 4.167 17 C -0.016 4.016 18 N -0.336 5.336 19 C -0.011 4.011 20 C -0.175 4.175 21 C -0.162 4.162 22 C -0.175 4.175 23 C 0.302 3.698 24 O -0.428 6.428 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.362 2.541 31.121 31.313 hybrid contribution 1.591 -0.551 -0.355 1.721 sum 3.953 1.991 30.765 31.082 Atomic orbital electron populations 1.21601 0.95263 1.00681 1.00668 1.21007 0.96376 0.98962 0.92905 0.92267 1.19619 0.95675 0.95936 0.93526 1.21140 1.35159 1.09554 0.89093 0.90825 1.25042 0.95723 0.96962 0.95972 1.69923 1.47270 1.39332 0.97976 0.86794 0.80632 0.84397 0.77528 1.20350 1.21519 1.19164 1.22177 0.96992 0.97834 0.89694 1.60474 1.64106 1.05694 1.01432 1.21830 0.96857 0.98511 0.89586 1.21856 1.02824 0.98945 0.93100 1.21516 0.99593 0.96429 0.84031 1.47336 1.18857 1.36886 1.30510 1.21450 0.92012 0.89059 0.98558 1.21924 1.00274 0.97731 0.97580 1.21665 0.97223 0.99349 0.97928 1.21669 0.99380 1.00429 0.96007 1.20177 0.80809 0.84092 0.84705 1.90749 1.57288 1.31154 1.63608 0.92265 0.94208 0.93694 0.96977 0.97027 0.92865 0.91541 0.95880 0.84572 0.91027 0.95690 0.92195 0.90621 0.89294 0.90720 0.91653 0.90484 0.90707 0.89705 0.90493 0.91142 0.88228 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 2 C -0.07 -1.49 2.48 -90.62 -0.22 -1.71 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.68 8.96 -34.44 -0.31 -14.99 16 6 H 0.07 2.27 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 9 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.06 1.04 5.07 -3.83 -0.02 1.02 16 14 N -0.69 -9.93 5.96 -113.78 -0.68 -10.60 16 15 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 16 C -0.13 -1.35 5.79 -26.73 -0.15 -1.51 16 17 C 0.11 1.00 5.22 -4.04 -0.02 0.98 16 18 N -0.60 -5.19 2.81 -174.85 -0.49 -5.68 16 19 C 0.11 0.59 6.32 -4.39 -0.03 0.56 16 20 C -0.14 -0.54 6.03 -26.50 -0.16 -0.70 16 21 C -0.12 -0.51 6.03 -26.51 -0.16 -0.67 16 22 C -0.14 -0.90 6.03 -28.10 -0.17 -1.06 16 23 C 0.51 5.38 7.46 -11.87 -0.09 5.29 16 24 O -0.55 -8.26 16.18 5.55 0.09 -8.17 16 25 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.34 4.56 8.73 -39.29 -0.34 4.22 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.00 7.13 -51.93 -0.37 0.63 16 39 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.29 8.12 -51.93 -0.42 -0.14 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -33.75 369.24 -9.60 -43.35 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.97 Total: -1.64 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.22 Total: -12.77 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.40 Total: -43.81 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.75 -9.60 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.125 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds