Wall clock time and date at job start Tue Mar 31 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47148 * 180.02562 * 17 16 15 19 19 C 1.45758 * 117.94283 * 269.73449 * 18 17 16 20 20 C 1.53106 * 110.38358 * 160.74576 * 19 18 17 21 21 C 1.53348 * 108.52861 * 51.11575 * 20 19 18 22 22 C 1.53075 * 108.42493 * 292.31119 * 21 20 19 23 23 C 1.33354 * 117.95012 * 90.00006 * 18 17 16 24 24 O 1.21284 * 118.24235 * 2.24317 * 23 18 17 25 25 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 39 39 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 40 40 H 1.08997 * 109.30413 * 281.23728 * 19 18 17 41 41 H 1.08998 * 109.30289 * 40.61795 * 19 18 17 42 42 H 1.08997 * 109.80722 * 291.32775 * 20 19 18 43 43 H 1.08999 * 109.68098 * 170.82544 * 20 19 18 44 44 H 1.08997 * 109.67639 * 172.57832 * 21 20 19 45 45 H 1.08997 * 109.70466 * 52.05517 * 21 20 19 46 46 H 1.09001 * 109.39954 * 288.77290 * 22 21 20 47 47 H 1.08995 * 109.33161 * 168.98785 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 7 1.7912 0.2814 -7.3316 19 6 0.5048 -0.0232 -7.9455 20 6 0.0346 1.1505 -8.8088 21 6 1.1723 1.5429 -9.7592 22 6 2.3157 2.1308 -8.9283 23 6 2.6251 1.2245 -7.7716 24 8 3.6906 1.3571 -7.2076 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 0.6529 0.1791 -2.4753 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 3.2829 -0.5787 -6.1347 39 1 1.7623 -1.4995 -6.2238 40 1 0.6034 -0.9143 -8.5654 41 1 -0.2317 -0.2113 -7.1643 42 1 -0.2194 1.9984 -8.1727 43 1 -0.8396 0.8531 -9.3880 44 1 0.8156 2.2873 -10.4710 45 1 1.5238 0.6614 -10.2952 46 1 2.0230 3.1110 -8.5520 47 1 3.2015 2.2332 -9.5551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:42 Heat of formation + Delta-G solvation = -71.690986 kcal Electronic energy + Delta-G solvation = -21915.962695 eV Core-core repulsion = 18711.019826 eV Total energy + Delta-G solvation = -3204.942870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79783 -37.35409 -36.79424 -35.49734 -34.04541 -32.31370 -30.53769 -29.91415 -26.60766 -26.24198 -24.94047 -24.09153 -22.70865 -22.03203 -21.43714 -19.14615 -18.96290 -17.02761 -16.82382 -16.70101 -15.97883 -15.88264 -14.77934 -14.62553 -14.58550 -14.37131 -13.90653 -13.81393 -13.68935 -13.57803 -13.16894 -12.60730 -12.39668 -12.15476 -11.99650 -11.72694 -11.70767 -11.57390 -11.48559 -11.39435 -11.23603 -11.02359 -10.81233 -10.63327 -10.20395 -10.06164 -9.89710 -9.81472 -9.43055 -9.00978 -8.43950 -8.26390 -8.16752 -6.29289 -3.97117 2.39091 2.66927 3.47245 3.50757 3.66267 4.14950 4.22841 4.24952 4.32187 4.36937 4.60302 4.77835 4.86194 4.92528 5.00861 5.07449 5.20360 5.23782 5.31057 5.33482 5.39328 5.42307 5.47129 5.49240 5.65275 5.68253 5.71476 5.75606 5.95865 6.01596 6.06799 6.18872 6.25510 6.40181 6.49265 6.84859 7.04287 7.06411 7.16553 7.31709 7.46594 7.59578 7.67480 7.91346 8.30543 8.54189 8.96110 9.74340 11.11210 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040137 B = 0.002243 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.435608 B =12480.058502 C =12576.353553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.067 0.933 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.690 5.690 15 C 0.062 3.938 16 C -0.128 4.128 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.112 3.888 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.135 4.135 23 C 0.513 3.487 24 O -0.550 6.550 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.268 0.732 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.337 0.663 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 3.066 -29.768 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.321 5.321 15 C -0.068 4.068 16 C -0.167 4.167 17 C -0.016 4.016 18 N -0.336 5.336 19 C -0.011 4.011 20 C -0.175 4.175 21 C -0.162 4.162 22 C -0.175 4.175 23 C 0.302 3.698 24 O -0.428 6.428 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.749 3.575 -27.813 28.625 hybrid contribution -0.822 -0.829 -1.743 2.098 sum -6.571 2.746 -29.556 30.402 Atomic orbital electron populations 1.21726 0.96510 1.00355 1.00418 1.21087 0.94983 1.00056 0.93546 0.91496 1.19246 0.95385 0.95402 0.92302 1.22060 1.38574 1.10240 0.92254 0.93174 1.25835 0.94786 0.97166 1.01406 1.70747 1.36366 1.14727 1.33504 0.83523 0.75965 0.75226 0.75358 1.21513 1.21546 1.21118 1.22143 1.00320 0.94332 0.89665 1.60520 1.19444 1.50698 1.01475 1.21834 1.00867 0.94684 0.89450 1.21859 1.00736 1.01006 0.93124 1.21514 1.02197 0.93836 0.84024 1.47333 1.19372 1.36301 1.30582 1.21452 0.84613 0.97971 0.97048 1.21924 0.98737 0.98542 0.98298 1.21666 0.94980 1.01644 0.97870 1.21668 1.00907 0.99278 0.95620 1.20178 0.83679 0.80784 0.85171 1.90751 1.23998 1.69633 1.58372 0.94849 0.94150 0.91722 0.97580 0.97694 0.92164 0.91543 0.95952 0.84480 0.90955 0.95681 0.92269 0.90620 0.89248 0.90684 0.91633 0.90515 0.90730 0.89706 0.90491 0.91129 0.88243 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.66 2.55 -90.62 -0.23 -1.89 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.12 8.41 -34.44 -0.29 -17.41 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.71 13.65 55.43 0.76 -27.95 16 9 Si 1.07 25.95 29.90 -169.99 -5.08 20.86 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.06 1.16 5.14 -3.82 -0.02 1.14 16 14 N -0.69 -10.68 6.50 -113.78 -0.74 -11.42 16 15 C 0.06 0.79 5.69 -3.82 -0.02 0.77 16 16 C -0.13 -1.42 5.79 -26.73 -0.15 -1.58 16 17 C 0.11 1.05 5.22 -4.04 -0.02 1.03 16 18 N -0.60 -5.35 2.81 -174.85 -0.49 -5.85 16 19 C 0.11 0.61 6.33 -4.39 -0.03 0.59 16 20 C -0.14 -0.56 6.03 -26.50 -0.16 -0.72 16 21 C -0.12 -0.53 6.03 -26.51 -0.16 -0.69 16 22 C -0.13 -0.92 6.03 -28.10 -0.17 -1.09 16 23 C 0.51 5.51 7.46 -11.87 -0.09 5.42 16 24 O -0.55 -8.43 16.18 5.55 0.09 -8.34 16 25 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.36 6.95 -51.93 -0.36 1.00 16 28 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 29 H 0.00 0.13 8.00 -51.93 -0.42 -0.28 16 30 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.86 6.98 -39.29 -0.27 4.58 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.05 7.13 -51.93 -0.37 0.68 16 39 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 42 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -34.15 369.27 -9.94 -44.10 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.82 Total: -0.80 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.22 Total: -16.16 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.47 Total: -45.22 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.15 -9.94 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.594 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds