Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.47037 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00082 * 179.97438 * 18 17 16 20 20 O 1.21286 * 120.00144 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00078 * 180.02562 * 19 18 17 22 22 C 1.53784 * 113.61434 * 279.13766 * 21 19 18 23 23 C 1.53960 * 87.02038 * 220.04929 * 22 21 19 24 24 C 1.53781 * 87.11010 * 25.36183 * 23 22 21 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 0.97004 * 119.99575 * 0.02562 * 18 17 16 41 41 H 1.09002 * 112.85200 * 50.33240 * 21 19 18 42 42 H 1.09005 * 113.61084 * 334.56266 * 22 21 19 43 43 H 1.08998 * 113.61763 * 105.46698 * 22 21 19 44 44 H 1.08998 * 113.53084 * 270.80915 * 23 22 21 45 45 H 1.08995 * 113.66577 * 139.93066 * 23 22 21 46 46 H 1.09000 * 113.61183 * 220.09237 * 24 23 22 47 47 H 1.08991 * 113.69419 * 89.20124 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7928 0.2834 7.3315 19 6 2.1196 -0.1369 8.5696 20 8 2.7486 -1.1637 8.7152 21 6 1.7037 0.6689 9.7732 22 6 2.6245 1.8664 10.0610 23 6 2.4774 1.5181 11.5535 24 6 2.1847 0.0756 11.1080 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.8938 -0.0449 -5.6799 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 1.2895 1.1044 7.2151 41 1 0.6441 0.9247 9.7657 42 1 3.6382 1.7390 9.6809 43 1 2.1878 2.8279 9.7910 44 1 1.6297 2.0075 12.0330 45 1 3.4029 1.6208 12.1200 46 1 1.3934 -0.4065 11.6819 47 1 3.0769 -0.5434 11.0143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602570520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -48.064630 kcal Electronic energy + Delta-G solvation = -21196.123075 eV Core-core repulsion = 17992.204721 eV Total energy + Delta-G solvation = -3203.918354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59364 -38.06000 -37.29136 -35.76025 -34.15442 -32.26812 -30.86153 -27.81858 -27.18051 -26.10710 -25.59697 -23.85854 -21.90048 -21.83480 -21.20249 -19.75417 -19.06733 -17.76332 -16.75807 -16.45484 -16.31197 -15.84481 -15.21610 -15.00514 -14.55918 -14.24015 -14.01049 -13.84910 -13.32640 -13.23582 -12.92789 -12.78210 -12.46891 -12.27609 -11.94630 -11.88948 -11.65187 -11.58174 -11.52860 -11.15853 -11.02019 -10.96571 -10.87973 -10.70980 -10.45429 -10.00648 -9.79882 -9.73497 -9.40900 -9.39494 -9.05754 -8.51341 -8.25092 -6.01784 -3.98689 2.30458 2.83932 3.31765 3.39160 3.42645 4.02398 4.10847 4.21376 4.26651 4.33594 4.47111 4.66666 4.72658 4.96091 4.97057 5.08833 5.19563 5.30116 5.31768 5.31965 5.40135 5.41531 5.50303 5.53358 5.61225 5.62547 5.72665 5.89329 5.93924 5.94297 6.02252 6.12462 6.29336 6.41074 6.57897 6.83534 7.02539 7.13892 7.16355 7.21408 7.30996 7.45597 7.55742 7.83118 7.91070 8.57662 9.03871 9.61168 11.11597 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049627 B = 0.001940 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.069331 B =14427.765040 C =14688.280518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.687 5.687 15 C 0.061 3.939 16 C -0.128 4.128 17 C 0.118 3.882 18 N -0.729 5.729 19 C 0.520 3.480 20 O -0.541 6.541 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.401 0.599 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 2.966 31.182 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.048 4.048 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.068 4.068 14 N -0.318 5.318 15 C -0.069 4.069 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.380 5.380 19 C 0.306 3.694 20 O -0.418 6.418 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.236 0.764 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.033 1.916 31.104 31.163 hybrid contribution 1.177 -0.281 -0.535 1.323 sum 1.144 1.634 30.569 30.634 Atomic orbital electron populations 1.21601 0.95254 1.00652 1.00676 1.21015 0.96375 0.99018 0.92906 0.92208 1.19617 0.95717 0.95920 0.93498 1.21135 1.35272 1.09583 0.89101 0.90823 1.25037 0.95679 0.96950 0.95966 1.69921 1.47202 1.39315 0.97993 0.86799 0.80638 0.84366 0.77578 1.20355 1.21488 1.19159 1.22186 0.97161 0.97804 0.89614 1.60502 1.64021 1.05817 1.01425 1.21810 0.97386 0.98338 0.89384 1.21756 1.02557 0.99498 0.92828 1.21335 1.00173 0.95272 0.83777 1.46052 1.58107 1.27893 1.05957 1.20564 0.79079 0.85491 0.84237 1.90703 1.40003 1.24849 1.86229 1.22826 1.01627 0.98044 0.93660 1.22865 0.99698 0.96745 0.96918 1.22867 1.02367 0.96752 0.96004 1.22801 1.02443 0.96667 0.93705 0.92232 0.94221 0.93714 0.96949 0.97029 0.92840 0.91491 0.95742 0.84440 0.90901 0.95317 0.91393 0.90287 0.91305 0.91569 0.76449 0.86877 0.89675 0.90542 0.89814 0.90904 0.90974 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.07 -1.44 2.48 -90.62 -0.22 -1.67 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 0.98 5.07 -3.83 -0.02 0.96 16 14 N -0.69 -8.98 5.96 -113.78 -0.68 -9.66 16 15 C 0.06 0.65 5.69 -3.82 -0.02 0.63 16 16 C -0.13 -1.05 5.59 -26.73 -0.15 -1.19 16 17 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 18 N -0.73 -5.55 5.56 -60.30 -0.33 -5.89 16 19 C 0.52 4.93 7.35 -10.99 -0.08 4.85 16 20 O -0.54 -7.44 15.91 5.55 0.09 -7.35 16 21 C -0.14 -0.88 4.14 -90.96 -0.38 -1.26 16 22 C -0.12 -0.64 7.64 -25.82 -0.20 -0.84 16 23 C -0.14 -0.68 8.09 -25.82 -0.21 -0.89 16 24 C -0.12 -0.78 7.40 -25.92 -0.19 -0.97 16 25 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.34 4.15 8.73 -39.29 -0.34 3.80 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 2.00 8.47 -40.82 -0.35 1.66 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.80 7.45 -51.93 -0.39 0.41 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -32.81 375.53 -9.75 -42.56 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.92 Total: -0.60 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.67 Total: -14.75 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.24 Total: -42.75 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.81 -9.75 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602570520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.506 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds