Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47148 * 180.02562 * 17 16 15 19 19 C 1.34773 * 119.99772 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.00105 * 179.97438 * 19 18 17 22 22 C 1.53777 * 113.61620 * 279.13819 * 21 19 18 23 23 C 1.53958 * 87.02180 * 220.04763 * 22 21 19 24 24 C 1.53781 * 113.61448 * 181.52879 * 21 19 18 25 25 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 26 26 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 27 27 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 39 39 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 40 40 H 0.96996 * 120.00037 * 359.97438 * 18 17 16 41 41 H 1.09000 * 112.84473 * 50.33141 * 21 19 18 42 42 H 1.09003 * 113.61225 * 334.56640 * 22 21 19 43 43 H 1.09001 * 113.62012 * 105.46340 * 22 21 19 44 44 H 1.08999 * 113.53357 * 270.81044 * 23 22 21 45 45 H 1.09000 * 113.66618 * 139.92858 * 23 22 21 46 46 H 1.09000 * 113.61308 * 254.52584 * 24 21 19 47 47 H 1.08993 * 113.61699 * 25.34887 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 7 1.7912 0.2814 -7.3316 19 6 2.1179 -0.1391 -8.5696 20 8 2.7475 -1.1655 -8.7150 21 6 1.7010 0.6659 -9.7734 22 6 0.2435 0.4254 -10.2007 23 6 0.7468 0.4702 -11.6550 24 6 2.1177 0.0336 -11.1118 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 3.2829 -0.5787 -6.1347 39 1 1.7623 -1.4995 -6.2238 40 1 1.2874 1.1021 -7.2153 41 1 1.9627 1.7206 -9.6885 42 1 -0.1438 -0.5489 -9.9025 43 1 -0.4277 1.2452 -9.9445 44 1 0.7464 1.4718 -12.0851 45 1 0.2781 -0.2702 -12.3032 46 1 2.9575 0.5376 -11.5902 47 1 2.2452 -1.0478 -11.0629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602570521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -77.558941 kcal Electronic energy + Delta-G solvation = -21183.594530 eV Core-core repulsion = 17978.397207 eV Total energy + Delta-G solvation = -3205.197323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26252 -38.84069 -38.40302 -36.92466 -35.66263 -34.14613 -31.85135 -28.62787 -28.10441 -26.82761 -26.52270 -25.27207 -23.87384 -22.67306 -21.89438 -20.98112 -20.23460 -18.86080 -18.40170 -17.30975 -17.06099 -16.57392 -16.10541 -15.98687 -15.81337 -15.58991 -15.41287 -15.09830 -14.75153 -14.09339 -13.81772 -13.75416 -13.48092 -13.41400 -13.16771 -13.02634 -12.90343 -12.67711 -12.56381 -12.43749 -12.15975 -12.00263 -11.95295 -11.79328 -11.56642 -11.44968 -11.32857 -11.29879 -10.75040 -10.55470 -10.52211 -10.15054 -9.41655 -8.65634 -6.34872 1.52817 1.57690 1.61578 1.80420 2.16064 2.58311 3.17056 3.18654 3.52418 3.64981 3.78815 3.90993 3.92138 4.02487 4.06118 4.18492 4.22186 4.27270 4.41029 4.49250 4.65095 4.67739 4.71496 4.78533 4.78810 4.81362 4.85735 4.88521 5.02735 5.06721 5.08603 5.11776 5.16300 5.18721 5.31816 5.36763 5.39739 5.48228 5.52494 5.64466 5.95158 6.08657 6.21987 6.44337 6.53975 6.61615 7.23103 7.46477 8.74865 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.059176 B = 0.001861 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.049068 B =15041.040013 C =15305.195509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.605 4.605 6 H 0.054 0.946 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.117 2.883 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.269 1.269 13 C 0.076 3.924 14 N -0.682 5.682 15 C 0.059 3.941 16 C -0.110 4.110 17 C 0.123 3.877 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.592 6.592 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.130 4.130 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.032 0.968 28 H -0.018 1.018 29 H -0.015 1.015 30 H 0.253 0.747 31 H 0.017 0.983 32 H 0.060 0.940 33 H 0.346 0.654 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.417 0.583 41 H 0.141 0.859 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 9.215 -30.275 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.643 4.643 6 H 0.072 0.928 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.938 3.062 10 H -0.212 1.212 11 H -0.193 1.193 12 H -0.194 1.194 13 C -0.054 4.054 14 N -0.313 5.313 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.002 4.002 18 N -0.368 5.368 19 C 0.301 3.699 20 O -0.473 6.473 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.170 4.170 24 C -0.168 4.168 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.000 1.000 29 H 0.003 0.997 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.383 8.216 -28.763 30.394 hybrid contribution 1.175 -0.252 -1.163 1.673 sum -4.208 7.963 -29.926 31.252 Atomic orbital electron populations 1.21482 0.94421 1.00321 1.00751 1.20910 0.96915 0.98352 0.92585 0.92616 1.19212 0.93700 0.94930 0.94514 1.22448 1.38017 1.10480 0.93372 0.92752 1.27445 0.94077 0.97284 1.05317 1.70922 1.38294 1.16034 1.32760 0.82938 0.76962 0.74540 0.71727 1.21169 1.19324 1.19383 1.21853 0.96486 0.97410 0.89638 1.60435 1.63991 1.05994 1.00889 1.21860 0.97391 0.98510 0.89270 1.21566 1.02877 0.99444 0.90893 1.21181 0.99405 0.95058 0.84561 1.45946 1.57461 1.28222 1.05143 1.21233 0.77900 0.85362 0.85373 1.90681 1.42217 1.27437 1.86942 1.22953 0.99930 1.01483 0.91284 1.22857 0.93417 1.02899 0.96636 1.22869 0.95086 1.03053 0.96000 1.22819 0.98953 1.00752 0.94226 0.94450 0.90909 0.94847 1.00017 0.99656 0.93768 0.96485 0.92136 0.83603 0.95360 0.91435 0.89602 0.89866 0.92711 0.92680 0.74550 0.84132 0.91182 0.88282 0.87832 0.90889 0.90361 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 2 C -0.07 -2.78 2.48 -10.79 -0.03 -2.81 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 4 C 0.01 0.73 3.76 29.85 0.11 0.85 16 5 C -0.61 -34.65 8.41 25.60 0.22 -34.44 16 6 H 0.05 3.01 7.06 -2.91 -0.02 2.99 16 7 C -0.04 -2.63 5.46 84.65 0.46 -2.16 16 8 N -0.94 -59.64 13.65 21.45 0.29 -59.34 16 9 Si 1.12 50.74 29.90 68.60 2.05 52.79 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.08 2.53 5.07 86.31 0.44 2.97 16 14 N -0.68 -17.38 5.96 -513.89 -3.06 -20.44 16 15 C 0.06 1.24 5.68 86.30 0.49 1.73 16 16 C -0.11 -1.61 5.59 30.59 0.17 -1.44 16 17 C 0.12 2.10 5.67 86.38 0.49 2.59 16 18 N -0.72 -10.08 5.56 -463.08 -2.57 -12.65 16 19 C 0.51 9.61 7.35 87.66 0.64 10.25 16 20 O -0.59 -17.09 15.91 -3.03 -0.05 -17.13 16 21 C -0.14 -1.50 4.14 -11.01 -0.05 -1.54 16 22 C -0.12 -1.02 7.64 31.18 0.24 -0.78 16 23 C -0.13 -1.03 8.09 31.18 0.25 -0.78 16 24 C -0.13 -1.65 7.40 31.12 0.23 -1.42 16 25 H 0.04 1.52 6.95 -2.39 -0.02 1.51 16 26 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 29 H -0.01 -0.84 8.00 -2.39 -0.02 -0.86 16 30 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.35 7.98 8.73 -89.69 -0.78 7.20 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 3.13 8.47 -92.71 -0.79 2.34 16 41 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 43 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 1.24 7.45 -2.39 -0.02 1.22 16 Total: -1.00 -73.69 377.81 0.43 -73.26 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.54 Total: 14.12 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.31 Total: -30.60 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -5.34 Total: -92.44 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.79 kcal Total: -73.69 0.43 -73.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602570521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.302 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds