Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47052 * 2 1 4 4 C 1.52998 * 109.47099 * 239.99615 * 2 1 3 5 5 C 1.50700 * 109.47113 * 65.00090 * 4 2 1 6 6 H 1.08006 * 119.99978 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99809 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47364 * 59.99613 * 9 7 5 11 11 H 1.48505 * 109.47151 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47178 * 299.99790 * 9 7 5 13 13 C 1.52997 * 109.47304 * 119.99427 * 2 1 3 14 14 N 1.46901 * 109.47371 * 295.00117 * 13 2 1 15 15 C 1.46894 * 111.00288 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.85971 * 322.66545 * 15 14 13 17 17 C 1.54624 * 110.97165 * 86.45366 * 15 14 13 18 18 C 1.51283 * 104.19601 * 93.35898 * 17 15 14 19 19 O 1.21286 * 124.94049 * 196.28006 * 18 17 15 20 20 N 1.34422 * 110.11822 * 16.25192 * 18 17 15 21 21 C 1.46497 * 124.35128 * 180.40504 * 20 18 17 22 22 C 1.52997 * 109.47188 * 0.03160 * 21 20 18 23 23 C 1.52992 * 109.47081 * 240.02704 * 21 20 18 24 24 C 1.53006 * 109.46631 * 120.02906 * 21 20 18 25 25 C 1.46766 * 111.29486 * 0.67903 * 20 18 17 26 26 H 1.08994 * 109.47442 * 60.00624 * 1 2 3 27 27 H 1.09003 * 109.46722 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47307 * 300.00096 * 1 2 3 29 29 H 1.08999 * 109.46978 * 184.99675 * 4 2 1 30 30 H 1.08994 * 109.47205 * 304.99769 * 4 2 1 31 31 H 0.97006 * 119.99625 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47619 * 175.00437 * 13 2 1 33 33 H 1.09001 * 109.47299 * 54.99788 * 13 2 1 34 34 H 1.00900 * 111.00069 * 303.95813 * 14 13 2 35 35 H 1.08997 * 110.48691 * 334.68361 * 17 15 14 36 36 H 1.08995 * 110.49326 * 212.03502 * 17 15 14 37 37 H 1.09002 * 109.47153 * 299.99573 * 22 21 20 38 38 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47261 * 59.99745 * 22 21 20 40 40 H 1.09001 * 109.47066 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47747 * 300.00111 * 23 21 20 42 42 H 1.09002 * 109.47103 * 60.00523 * 23 21 20 43 43 H 1.08993 * 109.46955 * 300.00228 * 24 21 20 44 44 H 1.09000 * 109.47050 * 60.00057 * 24 21 20 45 45 H 1.09001 * 109.47002 * 179.97438 * 24 21 20 46 46 H 1.08990 * 110.25067 * 101.71564 * 25 20 18 47 47 H 1.09007 * 110.24333 * 223.71594 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4025 -3.7282 8 7 2.6755 -1.5195 -3.8510 9 14 1.4976 0.5618 -5.2497 10 1 2.0896 1.9223 -5.1878 11 1 1.9927 -0.1383 -6.4622 12 1 0.0175 0.6682 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4456 15 6 2.1248 -0.6268 3.6672 16 1 2.0516 -1.7102 3.5730 17 6 3.5711 -0.1973 4.0058 18 6 3.3995 0.9640 4.9601 19 8 4.2669 1.7621 5.2460 20 7 2.1457 0.9830 5.4445 21 6 1.6394 1.9822 6.3887 22 6 2.7518 2.9781 6.7226 23 6 1.1774 1.2851 7.6698 24 6 0.4601 2.7268 5.7594 25 6 1.3512 -0.1296 4.9108 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 2.9227 -1.8425 -4.7317 32 1 3.1264 -0.7993 1.2057 33 1 1.6054 -1.7196 1.2953 34 1 1.9881 0.9875 2.3966 35 1 4.0946 0.1233 3.1052 36 1 4.1078 -1.0129 4.4903 37 1 3.5919 2.4477 7.1708 38 1 2.3749 3.7218 7.4247 39 1 3.0809 3.4747 5.8098 40 1 0.8003 2.0285 8.3721 41 1 0.3849 0.5756 7.4320 42 1 2.0176 0.7546 8.1180 43 1 0.7893 3.2233 4.8467 44 1 -0.3324 2.0172 5.5215 45 1 0.0831 3.4699 6.4621 46 1 1.2710 -0.9252 5.6515 47 1 0.3597 0.2194 4.6221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602574136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -51.976088 kcal Electronic energy + Delta-G solvation = -23048.755402 eV Core-core repulsion = 19844.667435 eV Total energy + Delta-G solvation = -3204.087967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93920 -37.42561 -36.81987 -35.45763 -33.09084 -31.70409 -29.19035 -28.04176 -27.59377 -27.09878 -26.67483 -24.94203 -22.51677 -21.88316 -21.05485 -19.10324 -18.70303 -16.76184 -16.48816 -16.24814 -15.65772 -14.80669 -14.66606 -14.46109 -14.35023 -14.10827 -13.79757 -13.77493 -13.49087 -12.90280 -12.69593 -12.46864 -12.28683 -12.26455 -12.06503 -11.88316 -11.69600 -11.59469 -11.45064 -11.39063 -11.29303 -11.19820 -10.85128 -10.79046 -10.30992 -10.29076 -9.73906 -9.48052 -9.17709 -8.99565 -8.78428 -8.33174 -8.27354 -5.98132 -3.99345 2.53457 2.81950 3.34435 3.38848 3.41352 4.09610 4.21672 4.46648 4.51335 4.62483 4.66184 4.78030 4.84147 5.12822 5.25739 5.31608 5.34751 5.37793 5.45228 5.50913 5.52720 5.58899 5.61621 5.67090 5.70546 5.71415 5.82468 5.88295 6.07103 6.11826 6.16132 6.36096 6.50298 6.54861 6.63992 6.95949 7.06180 7.13822 7.15515 7.26375 7.49618 7.67976 7.83449 8.01720 8.14145 8.45600 9.06743 9.64173 11.13347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.003112 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.069422 B = 8994.342815 C = 9123.781261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.674 5.674 15 C 0.078 3.922 16 H 0.105 0.895 17 C -0.192 4.192 18 C 0.519 3.481 19 O -0.534 6.534 20 N -0.608 5.608 21 C 0.173 3.827 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.157 4.157 25 C 0.107 3.893 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.340 0.660 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 2.963 22.696 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.304 5.304 15 C -0.033 4.033 16 H 0.123 0.877 17 C -0.234 4.234 18 C 0.307 3.693 19 O -0.411 6.411 20 N -0.343 5.343 21 C 0.090 3.910 22 C -0.198 4.198 23 C -0.214 4.214 24 C -0.215 4.215 25 C -0.016 4.016 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.939 3.041 22.786 23.323 hybrid contribution 0.710 0.523 -1.008 1.340 sum -3.229 3.564 21.778 22.302 Atomic orbital electron populations 1.21585 0.95661 1.00572 1.00140 1.21210 0.96038 0.98956 0.94024 0.92869 1.19106 0.95912 0.95540 0.90364 1.21197 1.34717 1.08307 0.91010 0.92641 1.25012 0.95314 0.95084 0.99089 1.69954 1.39016 1.21210 1.23503 0.86694 0.78903 0.80123 0.82491 1.20313 1.21368 1.20258 1.22211 0.97528 0.97671 0.89101 1.60571 1.62969 1.05855 1.00992 1.22567 0.90129 1.00042 0.90611 0.87695 1.23177 1.00618 0.98618 1.00972 1.20831 0.81796 0.85672 0.80969 1.90716 1.45184 1.43086 1.62095 1.48430 1.12329 1.28374 1.45161 1.20441 0.94734 0.87790 0.88070 1.22092 0.97253 0.97975 1.02437 1.22177 1.01532 1.01000 0.96691 1.22174 0.97488 1.00393 1.01447 1.22245 0.96559 0.88568 0.94226 0.92787 0.94107 0.94011 0.96925 0.96533 0.93031 0.95405 0.91186 0.84115 0.88006 0.87716 0.91433 0.92615 0.91248 0.91410 0.92161 0.92331 0.91900 0.91969 0.91541 0.91021 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.89 37.16 0.33 -1.94 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.99 4.93 -3.82 -0.02 0.97 16 14 N -0.67 -8.56 5.77 -104.91 -0.61 -9.17 16 15 C 0.08 0.79 3.43 -65.99 -0.23 0.56 16 16 H 0.11 0.96 7.92 -51.93 -0.41 0.55 16 17 C -0.19 -2.07 6.30 -26.74 -0.17 -2.23 16 18 C 0.52 6.59 7.84 -10.86 -0.09 6.50 16 19 O -0.53 -8.54 13.99 5.55 0.08 -8.46 16 20 N -0.61 -6.24 2.76 -157.46 -0.43 -6.67 16 21 C 0.17 1.60 1.20 -131.82 -0.16 1.44 16 22 C -0.14 -1.48 7.00 37.16 0.26 -1.22 16 23 C -0.16 -1.14 8.53 37.15 0.32 -0.82 16 24 C -0.16 -1.32 8.50 37.16 0.32 -1.00 16 25 C 0.11 0.93 6.33 -3.02 -0.02 0.92 16 26 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.45 7.85 -51.93 -0.41 0.04 16 33 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.34 4.56 8.53 -39.29 -0.34 4.23 16 35 H 0.10 1.23 7.79 -51.93 -0.40 0.83 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.82 7.06 -51.93 -0.37 0.45 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.40 7.89 -51.93 -0.41 -0.01 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.49 7.22 -51.93 -0.37 0.12 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.81 7.09 -51.92 -0.37 0.44 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -30.89 366.54 -8.69 -39.58 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.78 Total: -0.17 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.19 Total: -11.17 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.30 Total: -41.94 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.89 -8.69 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602574136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.396 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds