Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.46798 * 240.00265 * 2 1 3 5 5 C 1.50701 * 109.47211 * 65.00508 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.52997 * 109.46903 * 120.00662 * 2 1 3 14 14 N 1.46908 * 109.46699 * 294.99532 * 13 2 1 15 15 C 1.46900 * 110.99509 * 180.02562 * 14 13 2 16 16 H 1.09004 * 110.86161 * 37.34495 * 15 14 13 17 17 C 1.54627 * 110.97512 * 273.54696 * 15 14 13 18 18 C 1.51277 * 104.19634 * 266.68477 * 17 15 14 19 19 O 1.21288 * 124.94156 * 163.77778 * 18 17 15 20 20 N 1.34417 * 110.12069 * 343.74378 * 18 17 15 21 21 C 1.46495 * 124.35754 * 179.57146 * 20 18 17 22 22 C 1.53000 * 109.46791 * 359.97438 * 21 20 18 23 23 C 1.53004 * 109.47342 * 119.97329 * 21 20 18 24 24 C 1.52993 * 109.47368 * 239.97853 * 21 20 18 25 25 C 1.46771 * 111.29783 * 359.59429 * 20 18 17 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47425 * 299.99608 * 1 2 3 29 29 H 1.09000 * 109.47211 * 304.99535 * 4 2 1 30 30 H 1.09007 * 109.46376 * 185.00077 * 4 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47572 * 54.99886 * 13 2 1 33 33 H 1.09000 * 109.47136 * 175.00019 * 13 2 1 34 34 H 1.00904 * 110.99864 * 56.05335 * 14 13 2 35 35 H 1.09007 * 110.47995 * 25.36138 * 17 15 14 36 36 H 1.08993 * 110.48865 * 148.00263 * 17 15 14 37 37 H 1.09003 * 109.47289 * 59.99995 * 22 21 20 38 38 H 1.09003 * 109.47280 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47488 * 300.00195 * 22 21 20 40 40 H 1.09001 * 109.46870 * 60.00565 * 23 21 20 41 41 H 1.08997 * 109.46878 * 180.02562 * 23 21 20 42 42 H 1.08998 * 109.46831 * 300.00579 * 23 21 20 43 43 H 1.09002 * 109.47699 * 59.99577 * 24 21 20 44 44 H 1.09003 * 109.47018 * 179.97438 * 24 21 20 45 45 H 1.09001 * 109.47159 * 299.99627 * 24 21 20 46 46 H 1.08998 * 110.24812 * 258.02033 * 25 20 18 47 47 H 1.08991 * 110.24628 * 136.01397 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0801 0.9744 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5218 -3.8515 9 14 1.4871 0.5560 -5.2502 10 1 2.5507 1.5352 -5.5897 11 1 1.2959 -0.3807 -6.3865 12 1 0.2167 1.2775 -4.9843 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6268 3.6671 16 1 3.1087 -1.0711 3.5106 17 6 1.1097 -1.6873 4.1507 18 6 0.2441 -0.9455 5.1451 19 8 -0.8353 -1.3262 5.5463 20 7 0.8456 0.1966 5.5201 21 6 0.2763 1.1585 6.4670 22 6 -1.0873 0.6565 6.9461 23 6 1.2142 1.3098 7.6664 24 6 0.1072 2.5138 5.7776 25 6 2.1459 0.3564 4.8586 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6054 -1.7198 -1.2952 30 1 3.1264 -0.7994 -1.2056 31 1 2.9146 -1.8469 -4.7323 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 0.6528 0.1792 2.4753 35 1 0.5085 -2.0480 3.3160 36 1 1.6251 -2.5156 4.6368 37 1 -0.9670 -0.3091 7.4372 38 1 -1.5108 1.3720 7.6510 39 1 -1.7555 0.5487 6.0917 40 1 2.1856 1.6675 7.3251 41 1 0.7903 2.0252 8.3711 42 1 1.3345 0.3442 8.1575 43 1 -0.5609 2.4062 4.9232 44 1 -0.3168 3.2294 6.4821 45 1 1.0787 2.8715 5.4363 46 1 2.9526 0.1001 5.5453 47 1 2.2643 1.3793 4.5015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602574141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = -51.757033 kcal Electronic energy + Delta-G solvation = -23095.183601 eV Core-core repulsion = 19891.105133 eV Total energy + Delta-G solvation = -3204.078468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95076 -37.48227 -36.82599 -35.48438 -33.08651 -31.68729 -29.18983 -28.04644 -27.59436 -27.13320 -26.69088 -25.12920 -22.50133 -21.87520 -21.00880 -19.04257 -18.67852 -16.81105 -16.49791 -16.34805 -15.72703 -14.91830 -14.67593 -14.41983 -14.31210 -14.05875 -13.87063 -13.67918 -13.39076 -12.97615 -12.69015 -12.52420 -12.38018 -12.28624 -11.99576 -11.93672 -11.83847 -11.62729 -11.53282 -11.33784 -11.31840 -11.19960 -10.90203 -10.76124 -10.34826 -10.23872 -9.77015 -9.48558 -9.19075 -8.99672 -8.78609 -8.34030 -8.29853 -5.98591 -3.99771 2.52550 2.81598 3.32703 3.39179 3.42328 4.10521 4.21494 4.46300 4.50881 4.62154 4.65999 4.77814 4.83857 5.12975 5.25890 5.31591 5.34525 5.37399 5.45104 5.50679 5.52437 5.59142 5.61436 5.67998 5.70255 5.73135 5.80769 5.83884 6.02390 6.06874 6.15558 6.22002 6.41965 6.52232 6.54498 6.88333 7.05704 7.08479 7.13703 7.25125 7.49409 7.67994 7.83698 8.01403 8.13343 8.45115 9.06537 9.63845 11.12911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031795 B = 0.003094 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.434315 B = 9046.883093 C = 9217.926175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.677 5.677 15 C 0.077 3.923 16 H 0.106 0.894 17 C -0.192 4.192 18 C 0.519 3.481 19 O -0.534 6.534 20 N -0.608 5.608 21 C 0.173 3.827 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.157 4.157 25 C 0.107 3.893 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.341 0.659 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 4.566 22.451 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.308 5.308 15 C -0.034 4.034 16 H 0.124 0.876 17 C -0.234 4.234 18 C 0.307 3.693 19 O -0.411 6.411 20 N -0.343 5.343 21 C 0.090 3.910 22 C -0.198 4.198 23 C -0.214 4.214 24 C -0.215 4.215 25 C -0.016 4.016 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.137 4.742 22.538 23.060 hybrid contribution -0.712 -0.327 -0.929 1.215 sum -1.849 4.415 21.609 22.133 Atomic orbital electron populations 1.21747 0.96685 1.00509 1.00262 1.21230 0.94838 1.00117 0.94128 0.91590 1.19105 0.96119 0.95368 0.90303 1.21232 1.34731 1.08218 0.90980 0.92580 1.25013 0.95344 0.95062 0.99100 1.69960 1.39164 1.21150 1.23387 0.86634 0.78948 0.79793 0.82862 1.20714 1.21326 1.19919 1.22203 1.00462 0.94681 0.89167 1.60646 1.20052 1.49268 1.00828 1.22558 0.98884 0.91594 0.90406 0.87599 1.23175 0.99710 1.00207 1.00288 1.20828 0.85574 0.81255 0.81628 1.90715 1.21006 1.70621 1.58767 1.48431 1.20204 1.21398 1.44239 1.20444 0.93981 0.88513 0.88110 1.22092 0.94689 1.01122 1.01850 1.22177 0.99590 1.02267 0.97357 1.22178 1.02622 0.95603 1.01138 1.22219 0.84496 1.01945 0.92979 0.91800 0.93971 0.95125 0.96730 0.96633 0.93087 0.95470 0.91095 0.83889 0.88061 0.87678 0.91427 0.92604 0.91263 0.92138 0.91403 0.92329 0.91924 0.91514 0.91935 0.90982 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.16 16 2 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 1.00 5.00 -3.82 -0.02 0.98 16 14 N -0.68 -8.81 6.30 -104.99 -0.66 -9.47 16 15 C 0.08 0.79 3.43 -66.08 -0.23 0.56 16 16 H 0.11 0.98 7.92 -51.93 -0.41 0.57 16 17 C -0.19 -2.07 6.31 -26.75 -0.17 -2.24 16 18 C 0.52 6.59 7.84 -10.86 -0.09 6.50 16 19 O -0.53 -8.49 13.99 5.55 0.08 -8.42 16 20 N -0.61 -6.28 2.76 -157.57 -0.43 -6.72 16 21 C 0.17 1.60 1.20 -131.82 -0.16 1.45 16 22 C -0.14 -1.47 7.00 37.16 0.26 -1.21 16 23 C -0.16 -1.14 8.54 37.16 0.32 -0.83 16 24 C -0.16 -1.33 8.49 37.15 0.32 -1.01 16 25 C 0.11 0.95 6.33 -3.11 -0.02 0.93 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.03 0.43 7.85 -51.93 -0.41 0.02 16 33 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.34 4.65 6.78 -39.29 -0.27 4.38 16 35 H 0.10 1.22 7.78 -51.92 -0.40 0.81 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.81 7.06 -51.93 -0.37 0.45 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.87 7.08 -51.93 -0.37 0.51 16 40 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.50 7.21 -51.93 -0.37 0.13 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.83 7.07 -51.93 -0.37 0.47 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -30.77 364.24 -8.67 -39.44 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.66 Total: 0.43 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.20 Total: -11.31 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.36 Total: -42.19 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.77 -8.67 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602574141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.316 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds