Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53004 * 109.47527 * 239.99868 * 2 1 3 5 5 C 1.50699 * 109.46973 * 64.99594 * 4 2 1 6 6 O 1.21284 * 120.00024 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00178 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99739 * 0.02562 * 7 5 4 9 9 C 1.46500 * 120.00331 * 180.02562 * 7 5 4 10 10 H 1.09000 * 109.46821 * 0.02562 * 9 7 5 11 11 C 1.52995 * 109.47156 * 119.99901 * 9 7 5 12 12 C 1.50695 * 109.47148 * 240.00364 * 9 7 5 13 13 H 1.08003 * 120.00455 * 359.97438 * 12 9 7 14 14 C 1.37881 * 119.99999 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99865 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00040 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.46972 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46972 * 120.00035 * 16 14 12 19 19 H 1.48499 * 109.46737 * 239.99792 * 16 14 12 20 20 C 1.53005 * 109.47238 * 119.99874 * 2 1 3 21 21 C 1.53120 * 109.57370 * 180.16060 * 20 2 1 22 22 C 1.53040 * 109.27503 * 177.59141 * 21 20 2 23 23 N 1.46850 * 109.52419 * 300.82105 * 22 21 20 24 24 C 1.46841 * 111.19924 * 61.73999 * 23 22 21 25 25 C 1.53042 * 109.52629 * 298.26169 * 24 23 22 26 26 H 1.09001 * 109.47047 * 299.99888 * 1 2 3 27 27 H 1.08999 * 109.47258 * 60.00231 * 1 2 3 28 28 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47240 * 185.00122 * 4 2 1 30 30 H 1.09007 * 109.46965 * 305.00320 * 4 2 1 31 31 H 1.09007 * 109.47006 * 89.99634 * 8 7 5 32 32 H 1.08996 * 109.47174 * 209.99741 * 8 7 5 33 33 H 1.08994 * 109.47165 * 329.99672 * 8 7 5 34 34 H 1.08996 * 109.47295 * 300.00402 * 11 9 7 35 35 H 1.09000 * 109.46999 * 60.00423 * 11 9 7 36 36 H 1.08996 * 109.47265 * 180.02562 * 11 9 7 37 37 H 0.96999 * 119.99682 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.52314 * 59.99973 * 20 2 1 39 39 H 1.09002 * 109.50326 * 297.52512 * 21 20 2 40 40 H 1.08999 * 109.50267 * 57.65168 * 21 20 2 41 41 H 1.09002 * 109.46407 * 180.80522 * 22 21 20 42 42 H 1.08999 * 109.46610 * 60.83611 * 22 21 20 43 43 H 1.00905 * 110.99460 * 297.64520 * 23 22 21 44 44 H 1.08998 * 109.46320 * 178.24106 * 24 23 22 45 45 H 1.08998 * 109.45897 * 58.27716 * 24 23 22 46 46 H 1.09003 * 109.49792 * 299.23877 * 25 24 23 47 47 H 1.08994 * 109.50340 * 179.12119 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0116 1.0873 -2.3633 7 7 1.9845 -0.3920 -3.7002 8 6 2.7447 -1.6368 -3.8370 9 6 1.5974 0.3648 -4.8933 10 1 1.0428 1.2546 -4.5951 11 6 2.8525 0.7809 -5.6628 12 6 0.7300 -0.4963 -5.7749 13 1 0.4913 -1.5064 -5.4765 14 6 0.2411 0.0055 -6.9624 15 7 0.5313 1.2358 -7.3256 16 14 -0.8347 -1.0617 -8.0549 17 1 -1.0114 -2.3947 -7.4249 18 1 -2.1604 -0.4153 -8.2271 19 1 -0.1867 -1.2234 -9.3812 20 6 2.0400 -0.7212 1.2493 21 6 3.5712 -0.7191 1.2537 22 6 4.0737 -1.3886 2.5348 23 7 3.5619 -0.6600 3.7026 24 6 2.0944 -0.6889 3.7453 25 6 1.5328 0.0015 2.5002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7199 -1.2952 31 1 2.0546 -2.4764 -3.9225 32 1 3.3674 -1.5860 -4.7301 33 1 3.3774 -1.7744 -2.9603 34 1 3.4799 1.4037 -5.0252 35 1 3.4075 -0.1086 -5.9610 36 1 2.5646 1.3444 -6.5503 37 1 0.1877 1.5886 -8.1612 38 1 1.6771 -1.7491 1.2502 39 1 3.9383 -1.2695 0.3874 40 1 3.9338 0.3080 1.2135 41 1 5.1635 -1.3760 2.5478 42 1 3.7222 -2.4199 2.5676 43 1 3.9055 0.2887 3.7158 44 1 1.7467 -0.1681 4.6374 45 1 1.7522 -1.7234 3.7724 46 1 1.8634 1.0400 2.4797 47 1 0.4437 -0.0339 2.5246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602590995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -58.397173 kcal Electronic energy + Delta-G solvation = -23377.345711 eV Core-core repulsion = 20172.979305 eV Total energy + Delta-G solvation = -3204.366407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82704 -38.72356 -35.72019 -34.74475 -32.85455 -31.17129 -30.45993 -29.41943 -27.29119 -26.03849 -25.19941 -24.21669 -22.89295 -21.53017 -20.59074 -19.74469 -18.15659 -16.77275 -16.33209 -15.98180 -15.25591 -15.18530 -14.85284 -14.48705 -14.31603 -14.04959 -13.78232 -13.44429 -12.95590 -12.71659 -12.61594 -12.38996 -12.12375 -11.94506 -11.75042 -11.61940 -11.52048 -11.41216 -11.12511 -11.05048 -10.86765 -10.78285 -10.70538 -10.57922 -10.45025 -10.21204 -10.17362 -10.08354 -9.15606 -8.79536 -8.54818 -8.41978 -7.54451 -6.07164 -4.14971 3.25242 3.33016 3.35831 3.45780 3.97833 4.11670 4.39449 4.54868 4.61907 4.81497 4.95901 5.09854 5.19331 5.21820 5.25098 5.26919 5.37542 5.43364 5.61516 5.66359 5.70603 5.76949 5.79754 5.83078 5.89728 5.92503 5.96626 6.05000 6.09136 6.19390 6.29406 6.30421 6.56228 6.73402 6.76977 6.80820 6.82817 7.06902 7.14248 7.46503 7.54493 7.73021 8.02757 8.21123 8.57708 8.85194 9.11865 9.51914 10.98126 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033044 B = 0.003497 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.160462 B = 8005.452849 C = 8228.217249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.552 6.552 7 N -0.596 5.596 8 C 0.088 3.912 9 C 0.257 3.743 10 H 0.063 0.937 11 C -0.147 4.147 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.081 4.081 21 C -0.156 4.156 22 C 0.056 3.944 23 N -0.689 5.689 24 C 0.056 3.944 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.010 0.990 35 H 0.029 0.971 36 H 0.093 0.907 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.339 0.661 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -5.770 17.387 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.289 3.711 6 O -0.431 6.431 7 N -0.327 5.327 8 C -0.056 4.056 9 C 0.157 3.843 10 H 0.080 0.920 11 C -0.205 4.205 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.100 4.100 21 C -0.195 4.195 22 C -0.073 4.073 23 N -0.317 5.317 24 C -0.074 4.074 25 C -0.192 4.192 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.156 0.844 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.044 -5.651 17.705 19.543 hybrid contribution -0.762 -0.084 -1.612 1.785 sum 5.282 -5.735 16.093 17.882 Atomic orbital electron populations 1.21976 0.94771 1.01183 1.03058 1.20870 0.96499 0.99433 0.91712 0.90756 1.21820 1.02019 1.00181 0.93674 1.20442 0.80086 0.85882 0.84645 1.90601 1.40948 1.25273 1.86315 1.48254 1.53352 1.23855 1.07221 1.21532 0.95543 0.87161 1.01399 1.18911 0.92768 0.92596 0.80054 0.91950 1.22092 0.97139 0.99264 1.02050 1.21369 1.30663 0.99798 1.04398 0.92317 1.24905 0.96232 0.95104 0.97631 1.69894 1.44977 1.14620 1.23184 0.86448 0.80296 0.80452 0.80246 1.19839 1.20910 1.20946 1.21228 0.94662 0.99656 0.94415 1.22396 0.96156 1.01586 0.99406 1.22028 0.99529 0.98087 0.87683 1.60690 1.08823 1.20466 1.41712 1.22031 0.87458 1.01012 0.96857 1.22348 1.01669 0.99805 0.95396 0.93232 0.90122 0.93707 0.89644 0.89783 0.93440 0.91003 0.93049 0.97059 0.95161 0.88853 0.92776 0.91243 0.91048 0.91905 0.90922 0.91053 0.84354 0.90979 0.91087 0.91982 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.59 37.15 0.32 -1.89 16 2 C -0.07 -0.89 1.63 -90.62 -0.15 -1.04 16 3 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 4 C -0.14 -1.98 3.51 -27.88 -0.10 -2.08 16 5 C 0.50 10.20 7.39 -10.99 -0.08 10.12 16 6 O -0.55 -13.27 13.29 5.55 0.07 -13.20 16 7 N -0.60 -12.69 2.75 -175.27 -0.48 -13.17 16 8 C 0.09 1.47 9.48 59.85 0.57 2.04 16 9 C 0.26 6.61 2.63 -69.09 -0.18 6.43 16 10 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 11 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 12 C -0.52 -14.28 8.37 -34.44 -0.29 -14.56 16 13 H 0.06 1.59 7.65 -52.48 -0.40 1.18 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 16 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.08 -0.83 1.84 -90.49 -0.17 -1.00 16 21 C -0.16 -1.45 4.95 -26.65 -0.13 -1.58 16 22 C 0.06 0.47 6.55 -3.83 -0.03 0.45 16 23 N -0.69 -5.95 6.87 -113.82 -0.78 -6.73 16 24 C 0.06 0.47 6.55 -3.83 -0.03 0.45 16 25 C -0.15 -1.43 4.94 -26.65 -0.13 -1.56 16 26 H 0.05 0.63 6.49 -51.93 -0.34 0.29 16 27 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.07 5.50 -51.93 -0.29 0.78 16 30 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 31 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.34 2.68 8.86 -39.29 -0.35 2.33 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -30.46 351.57 -8.68 -39.14 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.24 Total: 2.99 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.15 Total: -5.78 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.64 Total: -44.60 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.46 -8.68 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602590995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds