Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 H 1.09003 * 109.46932 * 55.00223 * 17 16 14 19 19 C 1.52998 * 109.47555 * 295.00175 * 17 16 14 20 20 C 1.53004 * 109.47264 * 174.99806 * 17 16 14 21 21 C 1.53123 * 109.52172 * 299.87789 * 20 17 16 22 22 C 1.53042 * 109.27071 * 182.50420 * 21 20 17 23 23 N 1.46845 * 109.57863 * 59.08125 * 22 21 20 24 24 C 1.46845 * 111.19920 * 298.29111 * 23 22 21 25 25 C 1.53035 * 109.52573 * 61.73798 * 24 23 22 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 31 31 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 32 32 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 33 33 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 34 34 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 35 35 H 1.09003 * 109.47039 * 299.99982 * 19 17 16 36 36 H 1.09002 * 109.46764 * 59.99698 * 19 17 16 37 37 H 1.08993 * 109.47410 * 179.97438 * 19 17 16 38 38 H 1.09003 * 109.51650 * 60.00464 * 20 17 16 39 39 H 1.09001 * 109.50361 * 302.37613 * 21 20 17 40 40 H 1.08996 * 109.50436 * 62.49637 * 21 20 17 41 41 H 1.09004 * 109.41237 * 299.06272 * 22 21 20 42 42 H 1.09000 * 109.46046 * 179.13649 * 22 21 20 43 43 H 1.00900 * 110.99833 * 62.38884 * 23 22 21 44 44 H 1.09002 * 109.46116 * 301.72470 * 24 23 22 45 45 H 1.09003 * 109.46308 * 181.76215 * 24 23 22 46 46 H 1.08990 * 109.50305 * 180.87892 * 25 24 23 47 47 H 1.09001 * 109.52866 * 60.78168 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 1 3.5679 1.1132 4.3679 19 6 5.4008 0.5981 3.3599 20 6 4.5515 -0.4650 5.4554 21 6 3.2960 -0.8453 6.2452 22 6 3.7089 -1.4688 7.5805 23 7 4.5179 -0.5090 8.3425 24 6 5.7520 -0.1664 7.6242 25 6 5.4002 0.4974 6.2909 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9028 -0.5285 -4.4375 30 1 2.4157 -2.7377 0.9718 31 1 1.6237 -2.2852 2.5003 32 1 0.6904 -2.3002 0.9847 33 1 2.4470 -1.0879 3.9074 34 1 3.9003 -1.6024 3.0180 35 1 5.9784 -0.2994 3.1387 36 1 5.1115 1.0831 2.4276 37 1 6.0065 1.2834 3.9528 38 1 5.1292 -1.3627 5.2351 39 1 2.6985 0.0472 6.4307 40 1 2.7097 -1.5640 5.6727 41 1 4.2938 -2.3696 7.3943 42 1 2.8173 -1.7268 8.1520 43 1 3.9851 0.3194 8.5615 44 1 6.3273 -1.0732 7.4377 45 1 6.3443 0.5216 8.2274 46 1 6.3161 0.7374 5.7511 47 1 4.8369 1.4119 6.4766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602590996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = -49.652373 kcal Electronic energy + Delta-G solvation = -23440.528571 eV Core-core repulsion = 20236.541367 eV Total energy + Delta-G solvation = -3203.987204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91601 -38.84735 -35.89636 -34.84983 -32.79491 -31.23058 -30.80937 -29.97074 -27.47136 -26.21370 -25.10864 -24.27673 -22.94146 -21.66764 -20.65155 -19.78363 -18.23028 -17.07424 -16.46495 -16.01345 -15.53514 -15.33838 -14.88188 -14.66400 -14.22470 -14.10828 -13.84654 -13.58882 -13.02049 -12.82598 -12.74632 -12.47386 -12.24911 -12.21116 -12.02219 -11.84662 -11.80806 -11.55149 -11.46161 -11.22366 -11.11062 -10.84832 -10.70848 -10.62374 -10.49991 -10.15582 -10.12965 -9.65342 -9.34695 -8.90853 -8.64660 -8.57842 -7.70506 -6.15681 -4.16091 3.21924 3.30834 3.35676 3.38412 3.81357 4.08180 4.34094 4.50176 4.57264 4.76078 4.92504 5.04778 5.11513 5.16285 5.19594 5.23348 5.31849 5.38362 5.55588 5.62489 5.67627 5.69708 5.75834 5.78626 5.85206 5.87992 5.92396 5.98298 6.01897 6.15180 6.18803 6.24574 6.25537 6.31923 6.48478 6.50858 6.68852 6.77972 6.83452 7.11535 7.12735 7.36495 7.63012 8.20397 8.48393 8.84733 8.95036 9.45692 10.97184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.003623 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.284868 B = 7727.507494 C = 7939.163917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.590 5.590 13 C 0.087 3.913 14 C 0.505 3.495 15 O -0.552 6.552 16 C -0.136 4.136 17 C -0.067 4.067 18 H 0.074 0.926 19 C -0.154 4.154 20 C -0.081 4.081 21 C -0.156 4.156 22 C 0.056 3.944 23 N -0.689 5.689 24 C 0.056 3.944 25 C -0.153 4.153 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.339 0.661 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -1.619 20.865 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.321 5.321 13 C -0.056 4.056 14 C 0.293 3.707 15 O -0.431 6.431 16 C -0.176 4.176 17 C -0.085 4.085 18 H 0.092 0.908 19 C -0.211 4.211 20 C -0.100 4.100 21 C -0.195 4.195 22 C -0.073 4.073 23 N -0.317 5.317 24 C -0.074 4.074 25 C -0.192 4.192 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.156 0.844 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.000 -1.524 20.942 21.211 hybrid contribution -1.051 1.110 -1.206 1.947 sum 1.949 -0.414 19.736 19.836 Atomic orbital electron populations 1.22458 0.99266 1.00988 0.99206 1.19263 0.89850 0.95211 0.83008 0.92030 1.21170 1.32616 1.14176 0.88529 0.90435 1.24876 0.95695 0.96583 0.95641 1.69879 1.45272 1.40220 0.97964 0.86910 0.80401 0.83868 0.77462 1.20426 1.18840 1.22138 1.47897 1.49434 1.11774 1.22954 1.21581 1.01771 0.82892 0.99391 1.20487 0.78679 0.87121 0.84437 1.90600 1.58017 1.17366 1.77163 1.21814 1.00662 0.99742 0.95400 1.20878 0.96776 0.97797 0.93089 0.90781 1.21983 0.96370 1.00937 1.01779 1.21228 0.95916 0.98467 0.94370 1.22397 0.98025 1.01464 0.97647 1.22027 0.97297 0.95761 0.92260 1.60685 1.07891 1.17848 1.45248 1.22033 0.92479 1.00134 0.92722 1.22342 1.00775 0.98805 0.97282 0.94888 0.93188 0.92577 0.92453 0.92882 0.92757 0.90928 0.89478 0.89480 0.93558 0.90177 0.93173 0.91147 0.91956 0.91029 0.91017 0.90918 0.84372 0.91041 0.90961 0.90954 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.65 37.16 0.32 -3.16 16 2 C 0.23 5.53 2.23 -69.08 -0.15 5.38 16 3 H 0.06 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.64 8.95 -34.44 -0.31 -14.94 16 5 H 0.08 2.32 7.89 -52.49 -0.41 1.90 16 6 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 8 Si 0.88 21.98 24.37 -169.99 -4.14 17.84 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.26 -6.49 6.53 56.52 0.37 -6.13 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 N -0.59 -11.99 2.75 -175.25 -0.48 -12.47 16 13 C 0.09 1.40 9.48 59.85 0.57 1.97 16 14 C 0.51 9.77 7.39 -10.99 -0.08 9.69 16 15 O -0.55 -12.63 13.29 5.55 0.07 -12.55 16 16 C -0.14 -1.87 3.51 -27.89 -0.10 -1.97 16 17 C -0.07 -0.85 1.62 -90.62 -0.15 -1.00 16 18 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 19 C -0.15 -2.15 8.59 37.16 0.32 -1.83 16 20 C -0.08 -0.79 1.84 -90.50 -0.17 -0.96 16 21 C -0.16 -1.36 4.95 -26.65 -0.13 -1.50 16 22 C 0.06 0.45 6.55 -3.83 -0.03 0.43 16 23 N -0.69 -5.73 6.87 -113.81 -0.78 -6.52 16 24 C 0.06 0.45 6.55 -3.84 -0.03 0.43 16 25 C -0.15 -1.37 4.94 -26.65 -0.13 -1.50 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 28 H 0.06 1.12 6.66 -51.93 -0.35 0.77 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 33 H 0.09 1.01 5.50 -51.93 -0.29 0.73 16 34 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.42 5.95 -51.93 -0.31 1.11 16 37 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.34 2.56 8.86 -39.29 -0.35 2.22 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -31.75 344.75 -7.63 -39.38 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.11 Total: 2.35 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.16 Total: -6.92 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.49 Total: -45.30 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.75 -7.63 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602590996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.272 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds