Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00098 * 2 1 3 5 5 C 1.50696 * 109.47300 * 294.99712 * 4 2 1 6 6 O 1.21284 * 120.00109 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00137 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99828 * 0.28058 * 7 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 10 10 H 1.08995 * 109.47304 * 0.02562 * 9 7 5 11 11 C 1.52998 * 109.46656 * 120.00305 * 9 7 5 12 12 C 1.50700 * 109.47033 * 240.00036 * 9 7 5 13 13 H 1.08001 * 120.00017 * 0.02562 * 12 9 7 14 14 C 1.37881 * 119.99556 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00032 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99730 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47319 * 60.00017 * 16 14 12 18 18 H 1.48496 * 109.47312 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47444 * 300.00384 * 16 14 12 20 20 C 1.53004 * 109.46936 * 239.99698 * 2 1 3 21 21 C 1.53118 * 109.51876 * 179.87599 * 20 2 1 22 22 C 1.53050 * 109.27233 * 182.50788 * 21 20 2 23 23 N 1.46851 * 109.57584 * 59.08200 * 22 21 20 24 24 C 1.46847 * 111.19740 * 298.29159 * 23 22 21 25 25 C 1.53038 * 109.52381 * 61.74267 * 24 23 22 26 26 H 1.09000 * 109.47048 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47217 * 60.00083 * 1 2 3 28 28 H 1.09002 * 109.47527 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46930 * 174.99817 * 4 2 1 30 30 H 1.09000 * 109.47312 * 54.99761 * 4 2 1 31 31 H 1.08998 * 109.46661 * 269.71691 * 8 7 5 32 32 H 1.08993 * 109.47575 * 29.72405 * 8 7 5 33 33 H 1.09001 * 109.46870 * 149.72361 * 8 7 5 34 34 H 1.09002 * 109.46792 * 180.02562 * 11 9 7 35 35 H 1.09002 * 109.47539 * 299.99969 * 11 9 7 36 36 H 1.09005 * 109.47120 * 60.00270 * 11 9 7 37 37 H 0.97006 * 119.99631 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.52424 * 300.00034 * 20 2 1 39 39 H 1.08997 * 109.50477 * 302.37896 * 21 20 2 40 40 H 1.09000 * 109.50568 * 62.50520 * 21 20 2 41 41 H 1.08999 * 109.40720 * 299.07084 * 22 21 20 42 42 H 1.08991 * 109.46608 * 179.13062 * 22 21 20 43 43 H 1.00896 * 110.99712 * 62.38474 * 23 22 21 44 44 H 1.08999 * 109.46270 * 301.72929 * 24 23 22 45 45 H 1.09003 * 109.46379 * 181.75780 * 24 23 22 46 46 H 1.09007 * 109.50095 * 180.87942 * 25 24 23 47 47 H 1.08991 * 109.53563 * 60.78070 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9845 -0.3920 3.7002 8 6 2.7502 -1.6334 3.8367 9 6 1.5974 0.3650 4.8933 10 1 1.0422 1.2543 4.5952 11 6 0.7168 -0.5093 5.7883 12 6 2.8338 0.7747 5.6513 13 1 3.8102 0.4991 5.2811 14 6 2.7183 1.5012 6.8174 15 7 1.5292 1.8362 7.2684 16 14 4.2509 2.0097 7.7566 17 1 5.1049 2.8590 6.8879 18 1 3.8585 2.7758 8.9667 19 1 5.0077 0.7981 8.1622 20 6 2.0400 -0.7213 -1.2492 21 6 3.5712 -0.7193 -1.2520 22 6 4.0749 -1.3865 -2.5339 23 7 3.5632 -0.6579 -3.7017 24 6 2.0957 -0.6880 -3.7452 25 6 1.5329 0.0015 -2.5002 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7995 1.2056 30 1 1.6053 -1.7198 1.2952 31 1 2.0640 -2.4757 3.9250 32 1 3.3815 -1.7695 2.9587 33 1 3.3748 -1.5788 4.7283 34 1 0.4284 0.0541 6.6758 35 1 -0.1775 -0.8057 5.2401 36 1 1.2717 -1.3988 6.0866 37 1 1.4481 2.3471 8.0890 38 1 1.6771 -1.7492 -1.2501 39 1 3.9338 0.3078 -1.2107 40 1 3.9374 -1.2703 -0.3857 41 1 3.7243 -2.4180 -2.5672 42 1 5.1647 -1.3730 -2.5463 43 1 3.9059 0.2910 -3.7144 44 1 1.7544 -1.7228 -3.7727 45 1 1.7480 -0.1671 -4.6373 46 1 0.4437 -0.0349 -2.5252 47 1 1.8619 1.0403 -2.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602590997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = -59.084814 kcal Electronic energy + Delta-G solvation = -23385.066100 eV Core-core repulsion = 20180.669875 eV Total energy + Delta-G solvation = -3204.396225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82307 -38.71613 -35.71368 -34.74199 -32.85549 -31.16347 -30.45431 -29.42638 -27.30201 -25.99011 -25.21612 -24.21644 -22.88700 -21.53428 -20.58914 -19.73188 -18.17180 -16.76827 -16.33391 -16.02372 -15.24028 -15.07997 -14.84247 -14.50248 -14.37426 -14.04219 -13.76706 -13.48490 -12.82800 -12.70902 -12.62733 -12.36966 -12.12330 -11.94226 -11.77456 -11.68710 -11.44092 -11.41158 -11.16935 -11.02839 -10.86180 -10.80130 -10.66308 -10.61378 -10.45388 -10.25721 -10.17300 -10.07352 -9.17367 -8.79868 -8.53968 -8.41438 -7.54602 -6.07335 -4.15496 3.26894 3.32202 3.33339 3.45815 3.97979 4.12656 4.39064 4.55668 4.62546 4.81943 4.96813 5.09438 5.20342 5.22501 5.24828 5.27848 5.38782 5.43707 5.61968 5.66332 5.71526 5.77426 5.79308 5.83499 5.88528 5.93863 5.97141 6.02560 6.07652 6.19281 6.28503 6.37456 6.56137 6.69242 6.76731 6.81562 6.84904 7.08234 7.15290 7.45749 7.55484 7.72662 8.02772 8.21256 8.57700 8.83987 9.11936 9.51185 10.97876 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027043 B = 0.003646 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.138008 B = 7676.814007 C = 8069.943753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.552 6.552 7 N -0.595 5.595 8 C 0.085 3.915 9 C 0.258 3.742 10 H 0.062 0.938 11 C -0.146 4.146 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.080 4.080 21 C -0.157 4.157 22 C 0.056 3.944 23 N -0.689 5.689 24 C 0.056 3.944 25 C -0.153 4.153 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.010 0.990 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.340 0.660 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -8.193 -17.091 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.289 3.711 6 O -0.431 6.431 7 N -0.326 5.326 8 C -0.060 4.060 9 C 0.157 3.843 10 H 0.080 0.920 11 C -0.204 4.204 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.099 4.099 21 C -0.196 4.196 22 C -0.073 4.073 23 N -0.317 5.317 24 C -0.073 4.073 25 C -0.192 4.192 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.919 -8.103 -17.398 19.288 hybrid contribution 0.680 0.770 1.502 1.820 sum 2.599 -7.333 -15.896 17.698 Atomic orbital electron populations 1.21973 0.94872 1.01043 1.03025 1.20878 0.96398 0.99578 0.91742 0.90658 1.21817 1.02218 0.99973 0.93675 1.20448 0.80156 0.85794 0.84657 1.90601 1.41278 1.24966 1.86288 1.48259 1.53014 1.24112 1.07264 1.21575 0.95588 0.86432 1.02363 1.18898 0.94816 0.90736 0.79802 0.91988 1.22077 0.96769 0.99348 1.02219 1.21294 0.92501 1.35063 1.07679 0.92378 1.24895 0.96183 0.95533 0.97160 1.69872 1.22022 1.38309 1.22397 0.86562 0.83001 0.78682 0.79172 1.20257 1.21151 1.20237 1.21221 0.94718 0.99577 0.94394 1.22399 0.96104 1.01691 0.99395 1.22026 0.99557 0.98054 0.87681 1.60693 1.08826 1.20470 1.41708 1.22029 0.87491 1.00977 0.96845 1.22348 1.01608 0.99860 0.95410 0.90251 0.93190 0.93778 0.89517 0.89912 0.94039 0.92912 0.90234 0.88911 0.97117 0.95246 0.92639 0.91287 0.91857 0.91005 0.91086 0.90901 0.84322 0.91108 0.90988 0.91023 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.59 37.16 0.32 -1.81 16 2 C -0.07 -0.90 1.62 -90.62 -0.15 -1.05 16 3 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 4 C -0.14 -1.98 3.52 -27.88 -0.10 -2.08 16 5 C 0.50 10.22 7.39 -10.99 -0.08 10.14 16 6 O -0.55 -13.29 13.29 5.55 0.07 -13.22 16 7 N -0.60 -12.70 2.75 -175.27 -0.48 -13.18 16 8 C 0.08 1.42 9.25 59.85 0.55 1.97 16 9 C 0.26 6.64 2.64 -69.08 -0.18 6.45 16 10 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 11 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 12 C -0.53 -14.30 7.98 -34.44 -0.27 -14.58 16 13 H 0.06 1.55 7.31 -52.49 -0.38 1.16 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.29 11.32 55.43 0.63 -24.67 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 C -0.08 -0.83 1.84 -90.50 -0.17 -1.00 16 21 C -0.16 -1.50 4.95 -26.64 -0.13 -1.63 16 22 C 0.06 0.49 6.55 -3.82 -0.03 0.46 16 23 N -0.69 -6.08 6.87 -113.81 -0.78 -6.86 16 24 C 0.06 0.47 6.55 -3.83 -0.03 0.45 16 25 C -0.15 -1.44 4.94 -26.65 -0.13 -1.57 16 26 H 0.08 1.39 5.95 -51.93 -0.31 1.08 16 27 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.13 5.49 -51.93 -0.29 0.85 16 30 H 0.08 1.07 8.11 -51.93 -0.42 0.64 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 33 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.03 0.65 7.68 -51.93 -0.40 0.26 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.34 2.77 8.86 -39.29 -0.35 2.43 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.67 6.58 -51.92 -0.34 0.33 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -30.33 352.20 -8.73 -39.07 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.31 Total: 3.24 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.15 Total: -5.75 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.64 Total: -44.70 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.33 -8.73 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602590997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.017 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds