Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.52999 * 109.47341 * 240.00562 * 2 1 3 5 5 C 1.50696 * 109.47099 * 64.99514 * 4 2 1 6 6 O 1.21284 * 120.00412 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99890 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99865 * 0.02562 * 7 5 4 9 9 C 1.46499 * 120.00355 * 179.97438 * 7 5 4 10 10 H 1.09006 * 109.47028 * 0.02562 * 9 7 5 11 11 C 1.53002 * 109.47532 * 240.00389 * 9 7 5 12 12 C 1.50701 * 109.47207 * 120.00019 * 9 7 5 13 13 H 1.08002 * 119.99683 * 5.45726 * 12 9 7 14 14 C 1.37878 * 120.00236 * 185.46309 * 12 9 7 15 15 N 1.31516 * 119.99732 * 9.61539 * 14 12 9 16 16 Si 1.86793 * 119.99919 * 189.62111 * 14 12 9 17 17 H 1.48502 * 109.47378 * 84.99459 * 16 14 12 18 18 H 1.48507 * 109.46934 * 204.99219 * 16 14 12 19 19 H 1.48500 * 109.47259 * 324.98537 * 16 14 12 20 20 C 1.52997 * 109.47297 * 120.00178 * 2 1 3 21 21 C 1.53118 * 109.57537 * 180.16239 * 20 2 1 22 22 C 1.53043 * 109.27749 * 177.59058 * 21 20 2 23 23 N 1.46842 * 109.52366 * 300.82205 * 22 21 20 24 24 C 1.46844 * 111.20217 * 61.74047 * 23 22 21 25 25 C 1.53043 * 109.52276 * 298.25870 * 24 23 22 26 26 H 1.09005 * 109.47483 * 299.99621 * 1 2 3 27 27 H 1.09001 * 109.47197 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47427 * 185.00214 * 4 2 1 30 30 H 1.09009 * 109.46687 * 304.99903 * 4 2 1 31 31 H 1.08999 * 109.47582 * 90.00281 * 8 7 5 32 32 H 1.09008 * 109.46849 * 210.00037 * 8 7 5 33 33 H 1.08993 * 109.47305 * 329.99466 * 8 7 5 34 34 H 1.08997 * 109.46779 * 183.28496 * 11 9 7 35 35 H 1.08997 * 109.46588 * 303.28580 * 11 9 7 36 36 H 1.08995 * 109.47076 * 63.28615 * 11 9 7 37 37 H 0.96998 * 119.99575 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.52254 * 59.99575 * 20 2 1 39 39 H 1.09004 * 109.50079 * 297.53030 * 21 20 2 40 40 H 1.08995 * 109.50180 * 57.64902 * 21 20 2 41 41 H 1.08995 * 109.45816 * 180.80115 * 22 21 20 42 42 H 1.09004 * 109.45746 * 60.83285 * 22 21 20 43 43 H 1.00905 * 110.99546 * 297.64058 * 23 22 21 44 44 H 1.08997 * 109.46591 * 178.24434 * 24 23 22 45 45 H 1.09000 * 109.46001 * 58.27328 * 24 23 22 46 46 H 1.08997 * 109.50573 * 299.23719 * 25 24 23 47 47 H 1.09003 * 109.50259 * 179.11812 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4765 6 8 1.0116 1.0876 -2.3632 7 7 1.9845 -0.3916 -3.7001 8 6 2.7446 -1.6365 -3.8371 9 6 1.5964 0.3646 -4.8933 10 1 1.0412 1.2540 -4.5951 11 6 0.7162 -0.5104 -5.7880 12 6 2.8322 0.7754 -5.6517 13 1 3.8030 0.4268 -5.3315 14 6 2.7236 1.5961 -6.7542 15 7 1.5752 2.1729 -7.0340 16 14 4.2073 1.8887 -7.8506 17 1 4.3067 0.7959 -8.8512 18 1 4.0561 3.1893 -8.5514 19 1 5.4386 1.9138 -7.0209 20 6 2.0401 -0.7213 1.2492 21 6 3.5712 -0.7191 1.2536 22 6 4.0738 -1.3887 2.5347 23 7 3.5620 -0.6602 3.7025 24 6 2.0945 -0.6891 3.7452 25 6 1.5329 0.0014 2.5002 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 2.0548 -2.4760 -3.9228 32 1 3.3675 -1.5855 -4.7303 33 1 3.3774 -1.7742 -2.9604 34 1 0.4756 0.0315 -6.7026 35 1 1.2505 -1.4269 -6.0385 36 1 -0.2044 -0.7592 -5.2602 37 1 1.4987 2.7501 -7.8098 38 1 1.6771 -1.7491 1.2500 39 1 3.9384 -1.2693 0.3872 40 1 3.9338 0.3080 1.2135 41 1 5.1636 -1.3760 2.5476 42 1 3.7222 -2.4200 2.5674 43 1 3.9056 0.2885 3.7158 44 1 1.7467 -0.1683 4.6373 45 1 1.7523 -1.7236 3.7722 46 1 1.8634 1.0399 2.4797 47 1 0.4437 -0.0340 2.5246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602590999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = -60.118873 kcal Electronic energy + Delta-G solvation = -23382.846893 eV Core-core repulsion = 20178.405828 eV Total energy + Delta-G solvation = -3204.441065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81753 -38.71167 -35.70950 -34.73371 -32.81684 -31.15892 -30.46963 -29.49893 -27.31421 -26.01328 -25.18250 -24.21427 -22.88345 -21.55675 -20.60008 -19.73203 -18.16634 -16.77500 -16.31697 -16.01989 -15.23847 -15.07294 -14.83819 -14.49238 -14.35963 -14.03333 -13.76325 -13.48849 -12.83704 -12.70427 -12.60568 -12.38659 -12.11840 -11.93824 -11.78403 -11.73633 -11.52747 -11.41038 -11.15671 -10.99308 -10.89796 -10.79265 -10.71470 -10.61960 -10.44879 -10.27989 -10.17641 -10.07365 -9.21900 -8.76670 -8.53299 -8.39637 -7.55641 -6.08835 -4.13576 3.26161 3.32884 3.34459 3.46787 3.98136 4.13048 4.39759 4.56085 4.62934 4.82467 4.97382 5.09869 5.20644 5.21887 5.25471 5.28331 5.39307 5.44228 5.62217 5.66731 5.71929 5.77193 5.79629 5.83757 5.88874 5.94213 5.97649 6.01782 6.07244 6.19808 6.28898 6.35181 6.56780 6.67458 6.70862 6.76734 6.82131 7.00199 7.15698 7.37441 7.56893 7.71510 7.94309 8.18703 8.57456 8.86478 9.12912 9.51635 10.98540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003645 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.553798 B = 7680.562330 C = 8049.953981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.550 6.550 7 N -0.596 5.596 8 C 0.084 3.916 9 C 0.255 3.745 10 H 0.069 0.931 11 C -0.140 4.140 12 C -0.529 4.529 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.080 4.080 21 C -0.157 4.157 22 C 0.057 3.943 23 N -0.689 5.689 24 C 0.056 3.944 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.340 0.660 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -8.895 16.755 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.290 3.710 6 O -0.429 6.429 7 N -0.327 5.327 8 C -0.060 4.060 9 C 0.155 3.845 10 H 0.087 0.913 11 C -0.199 4.199 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.099 4.099 21 C -0.196 4.196 22 C -0.073 4.073 23 N -0.317 5.317 24 C -0.073 4.073 25 C -0.192 4.192 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.157 0.843 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.772 -8.774 17.089 19.292 hybrid contribution 0.647 0.676 -1.623 1.874 sum 2.419 -8.097 15.466 17.624 Atomic orbital electron populations 1.21973 0.94872 1.01026 1.03038 1.20877 0.96394 0.99600 0.91735 0.90639 1.21815 1.02221 0.99949 0.93684 1.20441 0.80138 0.85820 0.84636 1.90608 1.41194 1.24871 1.86252 1.48235 1.53221 1.23941 1.07281 1.21581 0.95661 0.86386 1.02397 1.18913 0.94938 0.90772 0.79872 0.91287 1.22006 0.96989 0.99212 1.01643 1.21279 0.92946 1.30670 1.11912 0.92301 1.24904 0.96116 0.94839 0.97768 1.69976 1.24721 1.29984 1.27465 0.86581 0.82941 0.77551 0.80753 1.20485 1.21192 1.19996 1.21219 0.94715 0.99566 0.94397 1.22398 0.96109 1.01689 0.99399 1.22025 0.99561 0.98038 0.87683 1.60686 1.08795 1.20510 1.41726 1.22028 0.87494 1.00964 0.96849 1.22352 1.01608 0.99867 0.95410 0.93185 0.90245 0.93791 0.89517 0.89934 0.94062 0.90285 0.92869 0.90658 0.95019 0.96624 0.92687 0.91299 0.91023 0.91837 0.90903 0.91084 0.84314 0.90991 0.91117 0.91944 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.59 37.16 0.32 -1.81 16 2 C -0.07 -0.90 1.63 -90.62 -0.15 -1.05 16 3 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 4 C -0.14 -1.98 3.51 -27.89 -0.10 -2.08 16 5 C 0.50 10.24 7.39 -10.99 -0.08 10.16 16 6 O -0.55 -13.32 13.29 5.55 0.07 -13.25 16 7 N -0.60 -12.65 2.75 -175.26 -0.48 -13.14 16 8 C 0.08 1.39 9.16 59.85 0.55 1.94 16 9 C 0.26 6.55 2.50 -69.08 -0.17 6.37 16 10 H 0.07 2.08 6.84 -51.93 -0.36 1.72 16 11 C -0.14 -3.32 9.12 37.16 0.34 -2.98 16 12 C -0.53 -14.37 8.01 -34.44 -0.28 -14.64 16 13 H 0.06 1.57 7.16 -52.49 -0.38 1.19 16 14 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 15 N -0.88 -25.49 12.16 55.43 0.67 -24.81 16 16 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.08 -0.83 1.84 -90.50 -0.17 -1.00 16 21 C -0.16 -1.51 4.95 -26.65 -0.13 -1.64 16 22 C 0.06 0.49 6.55 -3.83 -0.03 0.46 16 23 N -0.69 -6.10 6.87 -113.82 -0.78 -6.88 16 24 C 0.06 0.48 6.55 -3.83 -0.03 0.45 16 25 C -0.15 -1.44 4.94 -26.65 -0.13 -1.57 16 26 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 27 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.14 5.50 -51.93 -0.29 0.85 16 30 H 0.08 1.06 8.11 -51.92 -0.42 0.64 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.39 6.92 -51.92 -0.36 1.03 16 33 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.07 1.94 6.84 -51.93 -0.36 1.59 16 35 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.34 2.79 8.86 -39.29 -0.35 2.44 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -30.64 353.26 -8.68 -39.32 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.33 Total: 3.06 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.14 Total: -5.64 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.59 Total: -44.83 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.64 -8.68 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602590999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.797 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds