Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.52999 * 109.47341 * 240.00562 * 2 1 3 5 5 C 1.50696 * 109.47099 * 64.99514 * 4 2 1 6 6 O 1.21284 * 120.00412 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99890 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99865 * 0.02562 * 7 5 4 9 9 C 1.46499 * 120.00355 * 179.97438 * 7 5 4 10 10 H 1.09006 * 109.47028 * 0.02562 * 9 7 5 11 11 C 1.53002 * 109.47532 * 240.00389 * 9 7 5 12 12 C 1.50701 * 109.47207 * 120.00019 * 9 7 5 13 13 H 1.08002 * 119.99683 * 5.45726 * 12 9 7 14 14 C 1.37878 * 120.00236 * 185.46309 * 12 9 7 15 15 N 1.31516 * 119.99732 * 9.61539 * 14 12 9 16 16 Si 1.86793 * 119.99919 * 189.62111 * 14 12 9 17 17 H 1.48502 * 109.47378 * 84.99459 * 16 14 12 18 18 H 1.48507 * 109.46934 * 204.99219 * 16 14 12 19 19 H 1.48500 * 109.47259 * 324.98537 * 16 14 12 20 20 C 1.52997 * 109.47297 * 120.00178 * 2 1 3 21 21 C 1.53118 * 109.57537 * 180.16239 * 20 2 1 22 22 C 1.53043 * 109.27749 * 177.59058 * 21 20 2 23 23 N 1.46842 * 109.52366 * 300.82205 * 22 21 20 24 24 C 1.46844 * 111.20217 * 61.74047 * 23 22 21 25 25 C 1.53043 * 109.52276 * 298.25870 * 24 23 22 26 26 H 1.09005 * 109.47483 * 299.99621 * 1 2 3 27 27 H 1.09001 * 109.47197 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47427 * 185.00214 * 4 2 1 30 30 H 1.09009 * 109.46687 * 304.99903 * 4 2 1 31 31 H 1.08999 * 109.47582 * 90.00281 * 8 7 5 32 32 H 1.09008 * 109.46849 * 210.00037 * 8 7 5 33 33 H 1.08993 * 109.47305 * 329.99466 * 8 7 5 34 34 H 1.08997 * 109.46779 * 183.28496 * 11 9 7 35 35 H 1.08997 * 109.46588 * 303.28580 * 11 9 7 36 36 H 1.08995 * 109.47076 * 63.28615 * 11 9 7 37 37 H 0.96998 * 119.99575 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.52254 * 59.99575 * 20 2 1 39 39 H 1.09004 * 109.50079 * 297.53030 * 21 20 2 40 40 H 1.08995 * 109.50180 * 57.64902 * 21 20 2 41 41 H 1.08995 * 109.45816 * 180.80115 * 22 21 20 42 42 H 1.09004 * 109.45746 * 60.83285 * 22 21 20 43 43 H 1.00905 * 110.99546 * 297.64058 * 23 22 21 44 44 H 1.08997 * 109.46591 * 178.24434 * 24 23 22 45 45 H 1.09000 * 109.46001 * 58.27328 * 24 23 22 46 46 H 1.08997 * 109.50573 * 299.23719 * 25 24 23 47 47 H 1.09003 * 109.50259 * 179.11812 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4765 6 8 1.0116 1.0876 -2.3632 7 7 1.9845 -0.3916 -3.7001 8 6 2.7446 -1.6365 -3.8371 9 6 1.5964 0.3646 -4.8933 10 1 1.0412 1.2540 -4.5951 11 6 0.7162 -0.5104 -5.7880 12 6 2.8322 0.7754 -5.6517 13 1 3.8030 0.4268 -5.3315 14 6 2.7236 1.5961 -6.7542 15 7 1.5752 2.1729 -7.0340 16 14 4.2073 1.8887 -7.8506 17 1 4.3067 0.7959 -8.8512 18 1 4.0561 3.1893 -8.5514 19 1 5.4386 1.9138 -7.0209 20 6 2.0401 -0.7213 1.2492 21 6 3.5712 -0.7191 1.2536 22 6 4.0738 -1.3887 2.5347 23 7 3.5620 -0.6602 3.7025 24 6 2.0945 -0.6891 3.7452 25 6 1.5329 0.0014 2.5002 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7197 -1.2952 31 1 2.0548 -2.4760 -3.9228 32 1 3.3675 -1.5855 -4.7303 33 1 3.3774 -1.7742 -2.9604 34 1 0.4756 0.0315 -6.7026 35 1 1.2505 -1.4269 -6.0385 36 1 -0.2044 -0.7592 -5.2602 37 1 1.4987 2.7501 -7.8098 38 1 1.6771 -1.7491 1.2500 39 1 3.9384 -1.2693 0.3872 40 1 3.9338 0.3080 1.2135 41 1 5.1636 -1.3760 2.5476 42 1 3.7222 -2.4200 2.5674 43 1 3.9056 0.2885 3.7158 44 1 1.7467 -0.1683 4.6373 45 1 1.7523 -1.7236 3.7722 46 1 1.8634 1.0399 2.4797 47 1 0.4437 -0.0340 2.5246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602590999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = -80.061421 kcal Electronic energy + Delta-G solvation = -23383.711667 eV Core-core repulsion = 20178.405828 eV Total energy + Delta-G solvation = -3205.305839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08033 -39.85620 -37.28161 -35.96413 -34.76471 -32.07381 -31.72184 -30.85580 -28.56680 -27.47858 -27.27002 -25.14427 -23.69878 -22.99773 -21.63264 -20.79313 -19.74096 -18.54111 -17.89452 -17.26106 -16.76748 -16.45120 -16.03485 -15.53018 -15.50105 -15.07632 -14.85730 -14.64072 -14.39697 -14.15379 -13.86802 -13.66773 -13.52598 -13.14124 -13.08202 -12.87672 -12.82552 -12.78077 -12.70976 -12.53973 -12.30412 -12.21862 -12.08891 -12.00530 -11.78566 -11.65777 -11.36492 -11.22918 -10.94129 -10.55756 -10.36141 -9.28375 -9.22735 -8.17915 -6.31447 1.40277 1.41168 1.50769 1.89428 2.34269 2.53453 3.10958 3.45458 3.67874 3.73855 3.82189 4.10768 4.13326 4.26257 4.37381 4.42744 4.54346 4.54849 4.59911 4.64469 4.69664 4.72174 4.76117 4.84212 4.87818 4.95249 4.99049 5.00594 5.03490 5.06052 5.06506 5.17242 5.18572 5.29326 5.33286 5.45898 5.53037 5.55254 5.58777 5.68497 6.02246 6.13378 6.16395 6.51306 6.77932 6.90214 7.33767 7.55880 8.88902 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003645 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.553798 B = 7680.562330 C = 8049.953981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 H 0.044 0.956 4 C -0.122 4.122 5 C 0.489 3.511 6 O -0.600 6.600 7 N -0.605 5.605 8 C 0.079 3.921 9 C 0.259 3.741 10 H 0.010 0.990 11 C -0.125 4.125 12 C -0.540 4.540 13 H 0.063 0.937 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.268 1.268 20 C -0.070 4.070 21 C -0.154 4.154 22 C 0.061 3.939 23 N -0.695 5.695 24 C 0.061 3.939 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.264 0.736 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.342 0.658 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -11.463 18.005 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 H 0.063 0.937 4 C -0.161 4.161 5 C 0.279 3.721 6 O -0.483 6.483 7 N -0.336 5.336 8 C -0.063 4.063 9 C 0.156 3.844 10 H 0.028 0.972 11 C -0.184 4.184 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.089 4.089 21 C -0.193 4.193 22 C -0.069 4.069 23 N -0.323 5.323 24 C -0.069 4.069 25 C -0.190 4.190 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.560 -11.385 18.357 21.892 hybrid contribution 0.052 1.511 -1.967 2.480 sum 3.612 -9.875 16.390 19.473 Atomic orbital electron populations 1.21900 0.95452 1.01661 1.01490 1.20832 0.95902 0.98384 0.93081 0.93701 1.21825 1.03618 1.00136 0.90542 1.21550 0.79068 0.85610 0.85878 1.90594 1.43305 1.27375 1.87020 1.48279 1.53838 1.25142 1.06330 1.21850 0.96112 0.84698 1.03674 1.18490 0.94273 0.89957 0.81655 0.97202 1.21793 0.97241 0.99292 1.00061 1.21584 0.93492 1.30649 1.12157 0.91907 1.25789 0.98978 0.94579 0.99216 1.70128 1.27027 1.30762 1.28000 0.85495 0.79307 0.77515 0.78868 1.19039 1.21398 1.19291 1.21130 0.95285 0.99696 0.92781 1.22381 0.95344 1.01225 1.00397 1.22021 1.00015 0.98045 0.86814 1.60710 1.08986 1.20805 1.41833 1.22014 0.87241 1.01143 0.96455 1.22326 1.01684 0.99308 0.95665 0.92004 0.94510 0.91951 0.87335 0.86999 0.91629 0.91463 0.89140 0.93339 0.92725 0.95909 0.92732 0.89903 0.90407 0.93102 0.90170 0.90490 0.84059 0.90206 0.90623 0.93072 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.59 71.98 0.62 -3.48 16 2 C -0.06 -1.64 1.63 -10.79 -0.02 -1.65 16 3 H 0.04 1.44 7.95 -2.39 -0.02 1.42 16 4 C -0.12 -3.27 3.51 29.85 0.10 -3.17 16 5 C 0.49 20.08 7.39 87.66 0.65 20.73 16 6 O -0.60 -30.74 13.29 -3.04 -0.04 -30.78 16 7 N -0.61 -25.56 2.75 -826.78 -2.28 -27.83 16 8 C 0.08 2.40 9.16 127.77 1.17 3.57 16 9 C 0.26 13.66 2.50 44.25 0.11 13.77 16 10 H 0.01 0.64 6.84 -2.38 -0.02 0.62 16 11 C -0.13 -6.03 9.12 71.98 0.66 -5.37 16 12 C -0.54 -29.71 8.01 25.60 0.20 -29.51 16 13 H 0.06 3.32 7.16 -2.91 -0.02 3.30 16 14 C 0.01 0.78 5.17 84.65 0.44 1.22 16 15 N -0.92 -54.86 12.16 21.45 0.26 -54.60 16 16 Si 0.96 43.31 29.55 68.60 2.03 45.34 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 C -0.07 -1.28 1.84 -10.71 -0.02 -1.30 16 21 C -0.15 -2.56 4.95 30.65 0.15 -2.41 16 22 C 0.06 0.87 6.55 86.33 0.57 1.43 16 23 N -0.70 -10.62 6.87 -514.01 -3.53 -14.15 16 24 C 0.06 0.88 6.55 86.33 0.57 1.45 16 25 C -0.15 -2.57 4.94 30.65 0.15 -2.42 16 26 H 0.06 1.52 6.49 -2.38 -0.02 1.50 16 27 H 0.04 1.34 5.95 -2.39 -0.01 1.33 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 2.48 5.50 -2.39 -0.01 2.46 16 30 H 0.11 2.41 8.11 -2.38 -0.02 2.39 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.22 6.92 -2.38 -0.02 2.20 16 33 H 0.09 2.05 6.44 -2.39 -0.02 2.04 16 34 H 0.05 2.57 6.84 -2.39 -0.02 2.55 16 35 H 0.05 2.32 7.56 -2.39 -0.02 2.30 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.20 6.47 -2.39 -0.02 1.18 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.34 4.98 8.86 -89.69 -0.79 4.19 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.23 6.57 -2.39 -0.02 1.21 16 Total: -1.00 -70.63 353.26 1.94 -68.69 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.15 Total: 20.47 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.35 Total: -7.14 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -5.54 Total: -96.58 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.04 Total: -30.78 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.63 1.94 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602590999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.367 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds