Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47289 * 2 1 4 4 C 1.46006 * 118.53284 * 94.50161 * 3 2 1 5 5 C 1.52990 * 110.04090 * 161.81567 * 4 3 2 6 6 N 1.47195 * 108.72649 * 50.28897 * 5 4 3 7 7 C 1.46896 * 111.00032 * 54.36941 * 6 5 4 8 8 C 1.53003 * 109.47564 * 61.05553 * 7 6 5 9 9 H 1.08999 * 109.46955 * 305.10276 * 8 7 6 10 10 C 1.52999 * 109.46729 * 65.09800 * 8 7 6 11 11 C 1.53000 * 109.47541 * 185.10076 * 8 7 6 12 12 C 1.50698 * 109.47281 * 174.81429 * 11 8 7 13 13 H 1.08006 * 119.99506 * 4.74669 * 12 11 8 14 14 C 1.37877 * 119.99919 * 184.74674 * 12 11 8 15 15 N 1.31519 * 119.99894 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00016 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46919 * 90.00334 * 16 14 12 18 18 H 1.48500 * 109.47260 * 209.99716 * 16 14 12 19 19 H 1.48492 * 109.47356 * 330.00354 * 16 14 12 20 20 C 1.46893 * 110.17588 * 290.99983 * 6 5 4 21 21 C 1.53001 * 109.38777 * 170.45637 * 20 6 5 22 22 C 1.53004 * 109.38890 * 290.14515 * 20 6 5 23 23 C 1.33710 * 118.53844 * 274.22758 * 3 2 1 24 24 O 1.21287 * 118.61946 * 1.71423 * 23 3 2 25 25 H 1.08994 * 109.47219 * 55.05638 * 1 2 3 26 26 H 1.09007 * 109.46954 * 295.05742 * 1 2 3 27 27 H 1.09000 * 109.47153 * 175.06152 * 1 2 3 28 28 H 1.09007 * 109.47238 * 120.00352 * 2 1 3 29 29 H 1.09007 * 109.47288 * 239.99708 * 2 1 3 30 30 H 1.09003 * 109.37431 * 281.98830 * 4 3 2 31 31 H 1.08994 * 109.37994 * 41.64342 * 4 3 2 32 32 H 1.09000 * 109.59192 * 170.05888 * 5 4 3 33 33 H 1.08993 * 109.59575 * 290.51400 * 5 4 3 34 34 H 1.09002 * 109.47337 * 181.06045 * 7 6 5 35 35 H 1.09005 * 109.47390 * 301.05291 * 7 6 5 36 36 H 1.09007 * 109.47256 * 65.11124 * 10 8 7 37 37 H 1.08997 * 109.47054 * 185.10932 * 10 8 7 38 38 H 1.08999 * 109.47726 * 305.11148 * 10 8 7 39 39 H 1.09003 * 109.46767 * 294.81225 * 11 8 7 40 40 H 1.09000 * 109.46991 * 54.81114 * 11 8 7 41 41 H 0.96989 * 120.00205 * 179.97438 * 15 14 12 42 42 H 1.08995 * 109.47389 * 59.99976 * 21 20 6 43 43 H 1.09003 * 109.47370 * 180.02562 * 21 20 6 44 44 H 1.09003 * 109.46885 * 299.99467 * 21 20 6 45 45 H 1.08998 * 109.46985 * 59.99594 * 22 20 6 46 46 H 1.08998 * 109.47305 * 179.97438 * 22 20 6 47 47 H 1.08999 * 109.46855 * 300.00286 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3457 2.0052 1.2788 5 6 3.2365 3.2283 1.0525 6 7 2.6169 4.0806 0.0248 7 6 1.2339 4.4196 0.3859 8 6 1.2265 5.1948 1.7050 9 1 1.7474 4.6174 2.4687 10 6 1.9328 6.5381 1.5110 11 6 -0.2184 5.4373 2.1460 12 6 -0.2263 6.0873 3.5056 13 1 0.7044 6.3755 3.9717 14 6 -1.4215 6.3141 4.1543 15 7 -1.4284 6.8809 5.3411 16 14 -3.0311 5.8162 3.3478 17 1 -3.3697 4.4236 3.7368 18 1 -4.1122 6.7314 3.7938 19 1 -2.8912 5.8976 1.8717 20 6 2.6715 3.4167 -1.2844 21 6 1.8206 4.1993 -2.2866 22 6 4.1206 3.3771 -1.7737 23 6 2.1496 2.0123 -1.1714 24 8 1.8298 1.4282 -2.1851 25 1 -0.3633 0.5886 -0.8423 26 1 -0.3633 0.4353 0.9310 27 1 -0.3633 -1.0238 -0.0885 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.4264 2.3144 1.7761 31 1 2.8711 1.2867 1.9078 32 1 3.3319 3.7881 1.9829 33 1 4.2214 2.9058 0.7148 34 1 0.7936 5.0342 -0.3993 35 1 0.6531 3.5042 0.4992 36 1 1.3614 7.1518 0.8145 37 1 2.0079 7.0509 2.4698 38 1 2.9322 6.3687 1.1103 39 1 -0.7126 6.0914 1.4277 40 1 -0.7478 4.4858 2.1951 41 1 -2.2692 7.0408 5.7973 42 1 2.2070 5.2144 -2.3768 43 1 1.8598 3.7076 -3.2586 44 1 0.7882 4.2330 -1.9383 45 1 4.7304 2.8241 -1.0593 46 1 4.1628 2.8843 -2.7450 47 1 4.5011 4.3944 -1.8651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602620245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -31.832295 kcal Electronic energy + Delta-G solvation = -24478.370486 eV Core-core repulsion = 21275.156019 eV Total energy + Delta-G solvation = -3203.214467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31258 -37.91470 -36.21175 -35.08532 -32.54071 -32.01080 -30.49297 -28.84935 -27.48088 -27.36141 -25.52456 -24.27341 -23.13232 -22.15233 -21.28023 -19.05623 -17.82102 -17.20409 -16.71070 -16.59392 -15.98567 -15.33163 -14.82376 -14.33888 -14.20893 -13.92022 -13.76660 -13.43788 -13.06213 -12.98008 -12.70074 -12.34089 -12.31815 -12.18585 -12.04140 -11.96863 -11.79312 -11.70630 -11.66118 -11.33133 -11.03554 -10.99567 -10.77871 -10.73190 -10.38083 -10.10678 -9.87845 -9.66100 -9.45275 -9.07482 -8.80356 -8.54069 -8.13504 -6.04804 -4.01839 2.58879 2.83187 3.28438 3.37080 3.40873 3.86550 4.32164 4.44311 4.71295 4.83025 4.85812 5.01293 5.02041 5.11258 5.24523 5.29147 5.32186 5.47240 5.55867 5.58079 5.61674 5.64271 5.73988 5.76204 5.78015 5.82929 5.87608 5.98056 6.07635 6.11598 6.14119 6.29089 6.34539 6.36084 6.52702 6.80913 6.92587 7.00105 7.11161 7.13639 7.26008 7.36565 7.45439 7.79712 8.11252 8.54287 9.01064 9.58467 11.08536 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.005394 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.782000 B = 5190.021954 C = 5814.233835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 N -0.604 5.604 4 C 0.071 3.929 5 C 0.033 3.967 6 N -0.511 5.511 7 C 0.043 3.957 8 C -0.071 4.071 9 H 0.063 0.937 10 C -0.125 4.125 11 C -0.007 4.007 12 C -0.512 4.512 13 H 0.075 0.925 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.876 3.124 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.267 1.267 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.128 4.128 23 C 0.496 3.504 24 O -0.550 6.550 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.007 0.993 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 -10.606 -11.557 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.337 5.337 4 C -0.053 4.053 5 C -0.095 4.095 6 N -0.235 5.235 7 C -0.084 4.084 8 C -0.090 4.090 9 H 0.081 0.919 10 C -0.182 4.182 11 C -0.045 4.045 12 C -0.550 4.550 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.703 3.297 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.191 1.191 20 C 0.002 3.998 21 C -0.192 4.192 22 C -0.186 4.186 23 C 0.283 3.717 24 O -0.427 6.427 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.940 -10.385 -11.984 18.715 hybrid contribution -1.593 -1.100 0.037 1.936 sum 8.348 -11.484 -11.947 18.555 Atomic orbital electron populations 1.22090 0.95707 1.02134 1.02574 1.21454 0.94832 0.82516 1.02669 1.47588 1.65064 1.14440 1.06586 1.22241 1.01331 0.96660 0.85102 1.22670 0.97324 0.91502 0.98036 1.62698 1.19963 1.40584 1.00227 1.22622 0.86855 0.99057 0.99864 1.21052 0.98855 0.95991 0.93102 0.91908 1.21603 0.98804 0.96501 1.01342 1.19602 0.91642 0.95944 0.97348 1.21108 0.94560 1.38913 1.00432 0.90740 1.25014 0.98968 0.94831 0.94641 1.69905 1.26701 1.43803 1.13923 0.86844 0.83892 0.78470 0.80447 1.20499 1.21438 1.19137 1.21269 0.97905 0.88230 0.92383 1.21865 0.99268 1.00198 0.97872 1.21765 0.92551 1.03397 1.00873 1.21204 0.77758 0.89870 0.82891 1.90648 1.50065 1.67127 1.34864 0.92187 0.92373 0.91750 0.90610 0.90255 0.90336 0.90338 0.87465 0.90015 0.90234 0.94837 0.94050 0.92431 0.93429 0.96806 0.97512 0.92816 0.90580 0.91147 0.91957 0.92477 0.91668 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.19 37.16 0.38 -1.58 16 2 C 0.11 1.23 5.95 -4.04 -0.02 1.21 16 3 N -0.60 -7.74 2.65 -174.58 -0.46 -8.21 16 4 C 0.07 0.82 5.65 -4.31 -0.02 0.79 16 5 C 0.03 0.38 5.43 -3.67 -0.02 0.36 16 6 N -0.51 -6.69 4.05 -220.33 -0.89 -7.58 16 7 C 0.04 0.67 3.08 -3.82 -0.01 0.66 16 8 C -0.07 -1.30 2.15 -90.62 -0.19 -1.49 16 9 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 10 C -0.13 -2.22 8.87 37.16 0.33 -1.89 16 11 C -0.01 -0.17 3.51 -27.88 -0.10 -0.27 16 12 C -0.51 -13.99 9.10 -34.44 -0.31 -14.30 16 13 H 0.07 2.18 7.16 -52.48 -0.38 1.80 16 14 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 16 Si 0.88 21.60 27.38 -169.99 -4.65 16.95 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.37 6.68 56.52 0.38 -5.99 16 20 C 0.10 1.22 0.64 -132.97 -0.08 1.13 16 21 C -0.13 -1.69 7.50 37.16 0.28 -1.42 16 22 C -0.13 -1.36 8.44 37.16 0.31 -1.05 16 23 C 0.50 7.17 5.73 -11.68 -0.07 7.10 16 24 O -0.55 -9.40 15.58 5.55 0.09 -9.32 16 25 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.08 0.96 7.41 -51.92 -0.38 0.58 16 30 H 0.08 1.05 6.84 -51.93 -0.36 0.69 16 31 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 32 H 0.11 1.25 6.53 -51.93 -0.34 0.91 16 33 H 0.08 0.82 6.23 -51.93 -0.32 0.49 16 34 H 0.08 1.26 5.93 -51.93 -0.31 0.96 16 35 H 0.03 0.55 5.83 -51.93 -0.30 0.25 16 36 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.06 1.14 7.02 -51.93 -0.36 0.77 16 38 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 39 H 0.01 0.32 7.53 -51.93 -0.39 -0.07 16 40 H 0.01 0.15 7.31 -51.93 -0.38 -0.23 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 44 H 0.06 0.85 6.23 -51.93 -0.32 0.53 16 45 H 0.06 0.57 6.46 -51.93 -0.34 0.23 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -31.22 349.47 -7.76 -38.99 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.25 Total: -0.49 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 0.36 Total: -8.95 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.58 Total: -42.45 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.65 Total: 16.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.22 -7.76 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602620245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds