Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 C 1.53000 * 109.47003 * 119.99583 * 2 1 3 5 5 N 1.46503 * 109.47225 * 65.00631 * 4 2 1 6 6 C 1.46008 * 118.53737 * 89.99525 * 5 4 2 7 7 C 1.52990 * 110.04085 * 161.82010 * 6 5 4 8 8 N 1.47191 * 108.72586 * 50.29183 * 7 6 5 9 9 C 1.46895 * 111.00075 * 54.37250 * 8 7 6 10 10 C 1.53006 * 109.46799 * 169.99650 * 9 8 7 11 11 H 1.08996 * 109.46884 * 55.00215 * 10 9 8 12 12 C 1.52997 * 109.47127 * 294.99463 * 10 9 8 13 13 C 1.52999 * 109.46623 * 174.99527 * 10 9 8 14 14 C 1.50707 * 109.47009 * 184.99986 * 13 10 9 15 15 H 1.07996 * 119.99521 * 359.97438 * 14 13 10 16 16 C 1.37873 * 120.00339 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00295 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99793 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47195 * 90.00459 * 18 16 14 20 20 H 1.48503 * 109.47190 * 210.00292 * 18 16 14 21 21 H 1.48498 * 109.47389 * 330.00392 * 18 16 14 22 22 C 1.46897 * 110.17696 * 290.99555 * 8 7 6 23 23 C 1.33716 * 118.53485 * 269.97661 * 5 4 2 24 24 O 1.21285 * 118.62132 * 1.70859 * 23 5 4 25 25 H 1.09009 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47441 * 300.00015 * 1 2 3 27 27 H 1.08998 * 109.47397 * 60.00583 * 1 2 3 28 28 H 1.09000 * 109.47441 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.47054 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47423 * 299.99916 * 3 2 1 31 31 H 1.08999 * 109.47487 * 60.00234 * 3 2 1 32 32 H 1.08999 * 109.47587 * 305.00045 * 4 2 1 33 33 H 1.08999 * 109.47145 * 185.00152 * 4 2 1 34 34 H 1.09000 * 109.37414 * 41.64493 * 6 5 4 35 35 H 1.08999 * 109.28170 * 281.93445 * 6 5 4 36 36 H 1.08997 * 109.59116 * 290.51586 * 7 6 5 37 37 H 1.08992 * 109.59194 * 170.06605 * 7 6 5 38 38 H 1.09001 * 109.47563 * 49.99328 * 9 8 7 39 39 H 1.09000 * 109.46722 * 289.98941 * 9 8 7 40 40 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 42 42 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 43 43 H 1.08994 * 109.47465 * 305.00017 * 13 10 9 44 44 H 1.08998 * 109.47565 * 65.00449 * 13 10 9 45 45 H 0.97000 * 120.00616 * 179.97438 * 17 16 14 46 46 H 1.08995 * 109.38709 * 170.45756 * 22 8 7 47 47 H 1.09002 * 109.38871 * 290.15244 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 2.5641 -3.0806 0.5561 7 6 2.2172 -4.5080 0.9835 8 7 0.7747 -4.7233 0.7853 9 6 0.3806 -4.4110 -0.5949 10 6 -1.0567 -4.8786 -0.8330 11 1 -1.7118 -4.4354 -0.0831 12 6 -1.1207 -6.4037 -0.7291 13 6 -1.5101 -4.4430 -2.2278 14 6 -2.9634 -4.7947 -2.4163 15 1 -3.5088 -5.2808 -1.6209 16 6 -3.5964 -4.4970 -3.6044 17 7 -4.8647 -4.8035 -3.7686 18 14 -2.6528 -3.6569 -4.9804 19 1 -2.0335 -4.6847 -5.8552 20 1 -3.5838 -2.8215 -5.7808 21 1 -1.5910 -2.7967 -4.3991 22 6 0.0060 -3.9216 1.7466 23 6 0.4800 -2.4959 1.7210 24 8 -0.2307 -1.6386 2.2015 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2952 34 1 3.5876 -2.8525 0.8538 35 1 2.4750 -2.9956 -0.5269 36 1 2.4662 -4.6452 2.0357 37 1 2.7795 -5.2179 0.3770 38 1 1.0486 -4.9223 -1.2881 39 1 0.4440 -3.3349 -0.7562 40 1 -2.1445 -6.7368 -0.8992 41 1 -0.7976 -6.7140 0.2646 42 1 -0.4655 -6.8468 -1.4791 43 1 -1.3806 -3.3658 -2.3321 44 1 -0.9118 -4.9554 -2.9811 45 1 -5.3101 -4.5938 -4.6044 46 1 -1.0511 -3.9562 1.4831 47 1 0.1412 -4.3299 2.7482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602624916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = -42.644092 kcal Electronic energy + Delta-G solvation = -24121.489156 eV Core-core repulsion = 20917.805854 eV Total energy + Delta-G solvation = -3203.683302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98744 -37.80619 -36.51255 -35.17668 -33.44338 -31.99958 -29.91985 -28.18390 -27.15768 -27.06624 -26.08799 -24.76580 -23.13501 -21.79517 -20.41538 -19.34585 -18.17755 -16.94078 -16.75895 -16.60604 -16.06534 -15.33603 -15.04607 -14.64498 -14.38432 -14.09203 -13.72259 -13.44360 -13.18599 -13.06502 -12.82172 -12.48474 -12.32088 -12.16554 -12.02484 -11.83738 -11.58288 -11.49904 -11.40099 -11.10304 -10.97926 -10.88611 -10.75489 -10.74303 -10.54198 -10.15284 -9.73343 -9.73032 -9.43834 -9.05676 -8.75653 -8.50376 -8.19095 -6.00474 -3.97300 2.64193 2.84911 3.31289 3.39086 3.42170 3.91660 4.39290 4.47649 4.68146 4.76028 4.83491 4.85435 4.98758 5.03262 5.23781 5.30151 5.32863 5.35285 5.47766 5.55691 5.60024 5.63174 5.71266 5.75351 5.79185 5.86903 5.89812 5.98142 6.09272 6.19893 6.22197 6.32225 6.39032 6.52770 6.53804 6.77973 6.85762 7.00958 7.10496 7.16832 7.30912 7.37123 7.46830 7.83485 8.15959 8.58610 9.05394 9.62383 11.13008 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.005581 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.541101 B = 5015.732264 C = 5998.516194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.076 3.924 7 C 0.038 3.962 8 N -0.520 5.520 9 C 0.050 3.950 10 C -0.073 4.073 11 H 0.062 0.938 12 C -0.125 4.125 13 C -0.008 4.008 14 C -0.511 4.511 15 H 0.074 0.926 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.036 3.964 23 C 0.489 3.511 24 O -0.543 6.543 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.120 0.880 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.151 5.313 9.881 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.201 4.201 4 C -0.007 4.007 5 N -0.340 5.340 6 C -0.049 4.049 7 C -0.091 4.091 8 N -0.243 5.243 9 C -0.077 4.077 10 C -0.092 4.092 11 H 0.080 0.920 12 C -0.182 4.182 13 C -0.045 4.045 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.192 1.192 22 C -0.095 4.095 23 C 0.276 3.724 24 O -0.419 6.419 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.138 0.862 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.508 5.233 10.100 21.724 hybrid contribution 0.683 1.337 -1.189 1.915 sum 19.191 6.570 8.911 22.155 Atomic orbital electron populations 1.21807 0.93885 1.02548 1.01301 1.21485 0.97417 0.96045 0.98107 1.21763 1.00400 0.95752 1.02159 1.21606 0.99038 0.80880 0.99186 1.47481 1.19556 1.08536 1.58404 1.22166 0.93717 0.90598 0.98376 1.22589 0.90098 0.93651 1.02762 1.62577 1.02982 1.53680 1.05071 1.22505 0.99298 0.98585 0.87326 1.21063 0.91981 0.96678 0.99501 0.91970 1.21604 1.01874 0.95044 0.99675 1.19597 0.97387 0.95714 0.91849 1.21105 0.93628 1.38971 1.01229 0.90774 1.25010 0.94705 0.95402 0.98359 1.69907 1.10221 1.48260 1.25962 0.86834 0.80136 0.80111 0.82517 1.20376 1.21485 1.19200 1.22565 1.01553 0.86454 0.98948 1.21332 0.80650 0.93032 0.77393 1.90712 1.53169 1.51747 1.46253 0.92490 0.92236 0.93412 0.91462 0.92914 0.92382 0.92529 0.89771 0.91036 0.90557 0.91364 0.89995 0.88499 0.90753 0.94718 0.92117 0.93592 0.94193 0.97099 0.97102 0.92836 0.86166 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.85 37.16 0.29 -1.74 16 2 C -0.11 -1.28 3.13 -90.62 -0.28 -1.57 16 3 C -0.14 -1.34 9.19 37.16 0.34 -0.99 16 4 C 0.12 1.26 4.94 -4.04 -0.02 1.24 16 5 N -0.61 -7.19 2.54 -174.58 -0.44 -7.63 16 6 C 0.08 0.70 5.70 -4.31 -0.02 0.68 16 7 C 0.04 0.35 6.03 -3.67 -0.02 0.33 16 8 N -0.52 -6.57 4.48 -236.10 -1.06 -7.62 16 9 C 0.05 0.76 3.41 -3.82 -0.01 0.75 16 10 C -0.07 -1.41 2.29 -90.62 -0.21 -1.62 16 11 H 0.06 1.26 6.18 -51.93 -0.32 0.94 16 12 C -0.12 -2.28 8.89 37.16 0.33 -1.95 16 13 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 14 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 15 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 18 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 22 C 0.04 0.48 5.76 -5.19 -0.03 0.45 16 23 C 0.49 7.09 5.44 -11.67 -0.06 7.03 16 24 O -0.54 -9.60 14.17 5.55 0.08 -9.53 16 25 H 0.06 0.99 6.02 -51.92 -0.31 0.68 16 26 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 33 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 34 H 0.08 0.52 7.98 -51.93 -0.41 0.11 16 35 H 0.07 0.68 7.09 -51.93 -0.37 0.31 16 36 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.03 0.56 6.23 -51.93 -0.32 0.24 16 40 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 41 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 44 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.12 1.85 5.98 -51.93 -0.31 1.54 16 47 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -32.16 352.82 -8.75 -40.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.55 Total: -0.83 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.20 Total: -10.60 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.73 Total: -42.56 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.16 -8.75 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602624916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.732 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds