Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 C 1.53007 * 109.46941 * 119.99696 * 2 1 3 5 5 N 1.46502 * 109.46787 * 65.00357 * 4 2 1 6 6 C 1.46001 * 118.53676 * 89.99769 * 5 4 2 7 7 C 1.52986 * 110.04187 * 161.81382 * 6 5 4 8 8 N 1.47196 * 108.72864 * 50.29343 * 7 6 5 9 9 C 1.46893 * 111.00100 * 167.63485 * 8 7 6 10 10 C 1.52994 * 109.47213 * 170.00082 * 9 8 7 11 11 H 1.09006 * 109.47398 * 304.99999 * 10 9 8 12 12 C 1.53002 * 109.47288 * 64.99894 * 10 9 8 13 13 C 1.53002 * 109.47439 * 185.00290 * 10 9 8 14 14 C 1.50696 * 109.47271 * 175.00131 * 13 10 9 15 15 H 1.08000 * 120.00148 * 359.97438 * 14 13 10 16 16 C 1.37878 * 120.00074 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99922 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00476 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47181 * 59.99679 * 18 16 14 20 20 H 1.48501 * 109.47641 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.46912 * 300.00013 * 18 16 14 22 22 C 1.46921 * 110.16019 * 290.98757 * 8 7 6 23 23 C 1.33715 * 118.53306 * 269.97694 * 5 4 2 24 24 O 1.21281 * 118.62635 * 1.71099 * 23 5 4 25 25 H 1.09006 * 109.46725 * 59.99892 * 1 2 3 26 26 H 1.08998 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47107 * 300.00702 * 1 2 3 28 28 H 1.08996 * 109.47266 * 239.99823 * 2 1 3 29 29 H 1.08999 * 109.46940 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47015 * 299.99703 * 3 2 1 31 31 H 1.08996 * 109.47227 * 59.99800 * 3 2 1 32 32 H 1.09000 * 109.46905 * 305.00028 * 4 2 1 33 33 H 1.08994 * 109.46881 * 184.99902 * 4 2 1 34 34 H 1.09000 * 109.37575 * 41.64130 * 6 5 4 35 35 H 1.08995 * 109.28701 * 281.93051 * 6 5 4 36 36 H 1.08995 * 109.59408 * 170.06698 * 7 6 5 37 37 H 1.09000 * 109.59637 * 290.52059 * 7 6 5 38 38 H 1.08995 * 109.47404 * 290.00281 * 9 8 7 39 39 H 1.09002 * 109.46860 * 50.00317 * 9 8 7 40 40 H 1.08996 * 109.46748 * 60.00539 * 12 10 9 41 41 H 1.09002 * 109.47201 * 179.97438 * 12 10 9 42 42 H 1.08993 * 109.47007 * 300.00429 * 12 10 9 43 43 H 1.09009 * 109.46595 * 295.00118 * 13 10 9 44 44 H 1.09005 * 109.47350 * 54.99555 * 13 10 9 45 45 H 0.97004 * 120.00412 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.40456 * 290.17118 * 22 8 7 47 47 H 1.08997 * 109.37395 * 170.47009 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6524 -2.1328 1.1906 6 6 2.5639 -3.0806 0.5561 7 6 2.2170 -4.5080 0.9834 8 7 0.7745 -4.7233 0.7852 9 6 0.4346 -6.1480 0.8974 10 6 -1.0865 -6.3079 0.9357 11 1 -1.4958 -5.6987 1.7417 12 6 -1.6809 -5.8538 -0.3990 13 6 -1.4390 -7.7770 1.1775 14 6 -2.9310 -7.9159 1.3376 15 1 -3.5645 -7.0435 1.2737 16 6 -3.4874 -9.1566 1.5656 17 7 -2.7160 -10.2191 1.6429 18 14 -5.3367 -9.3288 1.7648 19 1 -6.0138 -8.8531 0.5317 20 1 -5.6788 -10.7547 1.9994 21 1 -5.7877 -8.5151 2.9224 22 6 0.0060 -3.9215 1.7470 23 6 0.4798 -2.4958 1.7210 24 8 -0.2309 -1.6385 2.2014 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6443 1.2952 34 1 3.5874 -2.8526 0.8538 35 1 2.4749 -2.9957 -0.5269 36 1 2.7793 -5.2179 0.3770 37 1 2.4659 -4.6452 2.0357 38 1 0.8349 -6.6858 0.0380 39 1 0.8657 -6.5534 1.8127 40 1 -1.2718 -6.4630 -1.2049 41 1 -2.7646 -5.9682 -0.3718 42 1 -1.4298 -4.8073 -0.5712 43 1 -1.1075 -8.3747 0.3283 44 1 -0.9423 -8.1256 2.0831 45 1 -3.1073 -11.0920 1.8037 46 1 0.1415 -4.3295 2.7486 47 1 -1.0512 -3.9563 1.4837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602624920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = -48.198357 kcal Electronic energy + Delta-G solvation = -23333.861567 eV Core-core repulsion = 20129.937414 eV Total energy + Delta-G solvation = -3203.924153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69011 -37.85621 -36.55382 -35.20692 -33.54003 -31.94498 -29.79447 -28.35049 -27.22969 -26.81491 -25.71863 -24.62413 -23.22963 -21.87338 -20.50030 -19.14601 -18.42832 -16.94689 -16.74372 -16.30033 -16.01294 -14.97442 -14.87427 -14.75886 -14.49611 -14.30663 -13.84188 -13.32217 -13.14544 -12.96484 -12.84235 -12.37348 -12.27913 -12.20016 -12.02632 -11.80755 -11.73336 -11.41888 -11.31095 -11.11923 -10.98976 -10.85278 -10.80398 -10.78361 -10.32484 -10.26372 -9.73621 -9.64379 -9.21099 -8.98116 -8.73932 -8.33693 -8.28670 -5.98824 -4.00087 2.66175 2.92785 3.34914 3.39082 3.42043 3.88098 4.47489 4.48587 4.64673 4.69650 4.78808 4.93538 5.01861 5.11773 5.24429 5.35897 5.37560 5.42108 5.50508 5.52710 5.59294 5.64316 5.70444 5.75045 5.80418 5.81961 5.85812 5.97172 6.05358 6.14656 6.32936 6.36614 6.40513 6.43300 6.56412 6.87403 6.94855 7.08515 7.18664 7.24740 7.39385 7.65768 7.80514 8.00527 8.18586 8.44197 9.05848 9.63611 11.12600 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.003447 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.923376 B = 8120.336403 C = 8619.133210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.122 3.878 7 C 0.032 3.968 8 N -0.528 5.528 9 C 0.059 3.941 10 C -0.091 4.091 11 H 0.059 0.941 12 C -0.125 4.125 13 C 0.029 3.971 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.035 3.965 23 C 0.524 3.476 24 O -0.547 6.547 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.017 0.983 44 H 0.013 0.987 45 H 0.260 0.740 46 H 0.070 0.930 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.142 17.575 -3.200 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.002 4.002 7 C -0.096 4.096 8 N -0.253 5.253 9 C -0.068 4.068 10 C -0.110 4.110 11 H 0.077 0.923 12 C -0.182 4.182 13 C -0.008 4.008 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.095 4.095 23 C 0.313 3.687 24 O -0.424 6.424 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.633 17.960 -3.391 22.802 hybrid contribution -0.693 -0.667 0.860 1.290 sum 12.939 17.293 -2.531 21.746 Atomic orbital electron populations 1.21803 0.94175 1.02421 1.01096 1.21476 0.97233 0.95956 0.98270 1.21775 1.00548 0.95790 1.02066 1.21607 0.99189 0.80919 0.99135 1.47451 1.19615 1.08454 1.58154 1.21514 0.92525 0.87953 0.98189 1.22498 0.90596 0.96152 1.00397 1.62663 1.03671 1.09651 1.49364 1.22426 0.98711 0.85182 1.00477 1.21385 0.90865 1.00981 0.97748 0.92292 1.21624 1.01114 0.98869 0.96631 1.19103 0.96408 0.88539 0.96777 1.21187 0.92431 0.93103 1.48530 0.92594 1.25008 0.97848 0.96064 0.95534 1.69953 1.34960 0.98769 1.50003 0.86693 0.85945 0.76889 0.78695 1.20230 1.21376 1.20276 1.22403 1.01597 0.89044 0.96476 1.20259 0.80472 0.91171 0.76809 1.90710 1.53683 1.51132 1.46860 0.93701 0.92420 0.92243 0.91303 0.92831 0.92495 0.92535 0.89784 0.90927 0.90712 0.91023 0.88689 0.93934 0.90423 0.94766 0.93809 0.92506 0.94159 0.96455 0.96895 0.93025 0.91181 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.85 37.16 0.29 -1.35 16 2 C -0.11 -1.04 3.13 -90.62 -0.28 -1.32 16 3 C -0.14 -1.08 9.19 37.16 0.34 -0.74 16 4 C 0.11 1.12 4.94 -4.04 -0.02 1.10 16 5 N -0.60 -6.87 2.73 -174.59 -0.48 -7.34 16 6 C 0.12 1.09 6.62 -4.32 -0.03 1.06 16 7 C 0.03 0.33 5.56 -3.67 -0.02 0.31 16 8 N -0.53 -7.21 4.33 -236.10 -1.02 -8.23 16 9 C 0.06 0.93 4.59 -3.83 -0.02 0.92 16 10 C -0.09 -1.78 1.83 -90.62 -0.17 -1.95 16 11 H 0.06 1.18 6.13 -51.93 -0.32 0.86 16 12 C -0.13 -2.35 8.71 37.16 0.32 -2.03 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 15 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.04 0.51 4.46 -5.18 -0.02 0.49 16 23 C 0.52 7.58 6.19 -11.67 -0.07 7.50 16 24 O -0.55 -9.37 14.17 5.56 0.08 -9.30 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.83 6.02 -51.93 -0.31 0.51 16 27 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.96 7.26 -51.93 -0.38 0.58 16 33 H 0.07 0.54 7.92 -51.93 -0.41 0.12 16 34 H 0.07 0.49 7.98 -51.93 -0.41 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 42 H 0.04 0.69 7.25 -51.93 -0.38 0.31 16 43 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 47 H 0.12 1.97 5.96 -51.93 -0.31 1.66 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -30.91 359.19 -9.18 -40.08 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.70 Total: -2.90 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.18 Total: -8.40 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.76 Total: -41.57 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.91 -9.18 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602624920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.116 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds